Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001551.1

Orthogroup ID

OG0004849

Physical Location & Seq

Genomic Coordinates Reverse (-)

91436 .. 92889

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001551.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgccgctaagctaccagagtcctcgcgacgatatatttgcaattaagatacgtgcagatcctaccattcgcatccaagaagattacgtccaggactccaagaggcccagtgggaccgcactagagtctctttgtgttcgccatcattgggatgtcagaggaaaatctttaccaaaagaaattcctgaagtcatgcctatttttctcaaaaagaagaagcgcaaattcctaaacttctcaaagcgcaaggcctccagttgcgagccgcataaaactgatggtgacgctgctgttgcagatgacgaggcaaagatagaaagctatatatgcatccctgtcccagagaatgcgagcattgaggagcggcttgctatctttcaacagaacaatgttgcatataatgaaagaatagaaaagaaaataatacaaaaagaaagttatgcgtcgcgaaggacgcggagacatcagcaactggcccgagcttcgccagaaatttccaacaagctatgttacaaccgaggcgaagtcaaggccagcgattggtctttaatgaacaatatgtcagcatcgtggaaggatttcgacaccaaaatggagtcagggagagtttcttccggcggtgagaagaagcaaaatcaaattgcagaaggttccatacccaatccagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

25.51

Weight (kDa)

9.17

Isoelectric Point (pI)

61.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004849)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28630
rosa_chinensis	RchiOBHm_Chr7g0195851
rosa_laevigata	RLG00000012332 RLG00000021565
rosa_multiflora	Rmu_co8209098.1_g000002 Rmu_sc0001551.1_g000016 Rmu_sc0002187.1_g000063 Rmu_sc0002187.1_g000066 Rmu_sc0002563.1_g000070 Rmu_sc0002717.1_g000010 Rmu_sc0003679.1_g000003 Rmu_sc0005003.1_g000005 Rmu_sc0005044.1_g000021 Rmu_sc0005044.1_g000023 Rmu_sc0005392.1_g000004 Rmu_sc0008245.1_g000018 Rmu_sc0008382.1_g000004 Rmu_sc0009227.1_g000002 Rmu_sc0017888.1_g000005
rosa_roxburghii	Rroxscaffold_176G00430960 Rroxscaffold_1G00004060 Rroxscaffold_6G00395070
rosa_samantha	Rh1CG420700 Rh1CG433300 Rh1DG437400 Rh2DG297400 Rh3AG107900 Rh3CG113700 Rh4CG269700 Rh5AG124400 Rh6AG162600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	540
AccBSI	CCGCTC	1 cut(s)	364
AccII	CGCG	3 cut(s)	27, 448, 457
AciI	CCGC	6 cut(s)	5, 117, 266, 364, 457, 618
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	3 cut(s)	180, 224, 492
AcuI	CTGAAG	1 cut(s)	207
AfiI	CCNNNNNNNGG	2 cut(s)	148, 540
AgsI	TTSAA	1 cut(s)	380
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	4 cut(s)	12, 321, 482, 505
AluI	AGCT	4 cut(s)	12, 321, 482, 505
Alw26I	GTCTC	2 cut(s)	132, 454
AlwI	GGATC	1 cut(s)	53
AlwNI	CAGNNNCTG	1 cut(s)	472
Ama87I	CYCGRG	1 cut(s)	477
AoxI	GGCC	4 cut(s)	104, 249, 474, 531
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	3 cut(s)	180, 224, 492
ArsI	GACNNNNNNTTYG	2 cut(s)	20, 52
Asp700I	GAANNNNTTC	1 cut(s)	578
AspLEI	GCGC	2 cut(s)	222, 246
AspS9I	GGNCC	3 cut(s)	105, 114, 475
AsuHPI	GGTGA	2 cut(s)	293, 632
AvaI	CYCGRG	1 cut(s)	477
AvaII	GGWCC	1 cut(s)	114
BarI	GAAGNNNNNNTAC	2 cut(s)	639, 671
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	2 cut(s)	150, 272
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	1 cut(s)	92
BcoDI	GTCTC	2 cut(s)	132, 454
BfaI	CTAG	1 cut(s)	122
BisI	GCNGC	4 cut(s)	5, 266, 288, 365
BlpI	GCTNAGC	1 cut(s)	8
BlsI	GCNGC	4 cut(s)	6, 267, 289, 366
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	114
BmeT110I	CYCGRG	1 cut(s)	477
BmgT120I	GGNCC	3 cut(s)	105, 114, 475
BmiI	GGNNCC	2 cut(s)	115, 652
BmrFI	CCNGG	1 cut(s)	92
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	3 cut(s)	81, 339, 575
BmuI	ACTGGG	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	238
Bpu1102I	GCTNAGC	1 cut(s)	8
BsaAI	YACGTR	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	517
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 540
Bse1I	ACTGG	3 cut(s)	108, 255, 477
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	517
BseGI	GGATG	3 cut(s)	72, 157, 330
BseLI	CCNNNNNNNGG	2 cut(s)	148, 540
BseNI	ACTGG	3 cut(s)	108, 255, 477
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	75
Bsh1236I	CGCG	3 cut(s)	27, 448, 457
BshFI	GGCC	4 cut(s)	106, 251, 476, 533
BsiHKCI	CYCGRG	1 cut(s)	477
BsiSI	CCGG	1 cut(s)	615
BslFI	GGGAC	2 cut(s)	127, 323
BslI	CCNNNNNNNGG	2 cut(s)	148, 540
BsmAI	GTCTC	2 cut(s)	132, 454
BsmFI	GGGAC	2 cut(s)	127, 323
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	4 cut(s)	106, 251, 476, 533
BsoBI	CYCGRG	1 cut(s)	477
Bsp143I	GATC	1 cut(s)	58
Bsp1720I	GCTNAGC	1 cut(s)	8
Bsp68I	TCGCGA	2 cut(s)	27, 448
BspACI	CCGC	6 cut(s)	5, 117, 266, 364, 457, 618
BspANI	GGCC	4 cut(s)	106, 251, 476, 533
BspFNI	CGCG	3 cut(s)	27, 448, 457
BspLI	GGNNCC	2 cut(s)	115, 652
BspPI	GGATC	1 cut(s)	53
BsrBI	CCGCTC	1 cut(s)	364
BsrI	ACTGG	3 cut(s)	108, 255, 477
BssECI	CCNNGG	1 cut(s)	517
BssMI	GATC	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	92
BstBAI	YACGTR	1 cut(s)	53
BstC8I	GCNNGC	4 cut(s)	263, 352, 369, 535
BstDEI	CTNAG	1 cut(s)	8
BstF5I	GGATG	3 cut(s)	72, 157, 330
BstFNI	CGCG	3 cut(s)	27, 448, 457
BstHHI	GCGC	2 cut(s)	222, 246
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	2 cut(s)	132, 454
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 327, 454
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstUI	CGCG	3 cut(s)	27, 448, 457
BstV1I	GCAGC	1 cut(s)	274
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	4 cut(s)	106, 251, 476, 533
BtsCI	GGATG	3 cut(s)	72, 157, 330
BtsIMutI	CAGTG	1 cut(s)	115
BtuMI	TCGCGA	2 cut(s)	27, 448
Cac8I	GCNNGC	4 cut(s)	263, 352, 369, 535
CaiI	CAGNNNCTG	1 cut(s)	472
CfoI	GCGC	2 cut(s)	222, 246
Cfr13I	GGNCC	3 cut(s)	105, 114, 475
CseI	GACGC	3 cut(s)	293, 432, 463
CviAII	CATG	1 cut(s)	193
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
Eco147I	AGGCCT	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	207
Eco88I	CYCGRG	1 cut(s)	477
EcoRII	CCWGG	1 cut(s)	90
EcoT22I	ATGCAT	1 cut(s)	332
FaeI	CATG	1 cut(s)	196
FaqI	GGGAC	2 cut(s)	127, 323
FatI	CATG	1 cut(s)	192
Fnu4HI	GCNGC	4 cut(s)	5, 266, 288, 365
FokI	GGATG	3 cut(s)	59, 164, 317
Fsp4HI	GCNGC	4 cut(s)	5, 266, 288, 365
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	2 cut(s)	221, 245
GluI	GCNGC	4 cut(s)	5, 266, 288, 365
GsuI	CTGGAG	1 cut(s)	238
HaeIII	GGCC	4 cut(s)	106, 251, 476, 533
HapII	CCGG	1 cut(s)	615
HgaI	GACGC	3 cut(s)	293, 432, 463
HhaI	GCGC	2 cut(s)	222, 246
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	2 cut(s)	220, 244
HinP1I	GCGC	2 cut(s)	220, 244
HinfI	GANTC	4 cut(s)	19, 95, 125, 596
HpaII	CCGG	1 cut(s)	615
HphI	GGTGA	2 cut(s)	293, 632
Hpy188I	TCNGA	1 cut(s)	158
Hpy188III	TCNNGA	4 cut(s)	26, 185, 447, 665
Hpy99I	CGWCG	2 cut(s)	32, 448
HpyAV	CCTTC	3 cut(s)	444, 568, 641
HpyCH4IV	ACGT	2 cut(s)	52, 87
HpyCH4V	TGCA	6 cut(s)	41, 56, 296, 330, 395, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 327, 454
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	2 cut(s)	52, 87
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	2 cut(s)	220, 244
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	3 cut(s)	81, 339, 575
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	2 cut(s)	52, 87
MaeIII	GTNAC	2 cut(s)	281, 509
MalI	GATC	1 cut(s)	60
MbiI	CCGCTC	1 cut(s)	364
MboI	GATC	1 cut(s)	58
MboII	GAAGA	4 cut(s)	92, 226, 603, 637
MflI	RGATCY	1 cut(s)	58
MluCI	AATT	5 cut(s)	42, 180, 224, 492, 639
MlyI	GAGTC	4 cut(s)	28, 89, 134, 605
MmeI	TCCRAC	1 cut(s)	522
MnlI	CCTC	7 cut(s)	33, 96, 152, 262, 298, 352, 512
Mph1103I	ATGCAT	1 cut(s)	332
MroXI	GAANNNNTTC	1 cut(s)	578
MseI	TTAA	2 cut(s)	45, 548
MslI	CAYNNNNRTG	2 cut(s)	150, 590
MspI	CCGG	1 cut(s)	615
MspR9I	CCNGG	1 cut(s)	92
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	3 cut(s)	27, 448, 457
MwoI	GCNNNNNNNGC	3 cut(s)	293, 327, 454
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	2 cut(s)	115, 652
NmuCI	GTSAC	1 cut(s)	281
NruI	TCGCGA	2 cut(s)	27, 448
NsiI	ATGCAT	1 cut(s)	332
PceI	AGGCCT	1 cut(s)	251
PctI	GAATGC	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	578
PflMI	CCANNNNNTGG	1 cut(s)	540
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	4 cut(s)	6, 267, 289, 366
PleI	GAGTC	4 cut(s)	27, 89, 133, 604
PpsI	GAGTC	4 cut(s)	27, 89, 133, 604
Ppu21I	YACGTR	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	115, 652
PspPI	GGNCC	3 cut(s)	105, 114, 475
PstNI	CAGNNNCTG	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	58
RruI	TCGCGA	2 cut(s)	27, 448
RseI	CAYNNNNRTG	2 cut(s)	150, 590
SaqAI	TTAA	2 cut(s)	45, 548
SatI	GCNGC	4 cut(s)	5, 266, 288, 365
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	3 cut(s)	105, 114, 475
SchI	GAGTC	4 cut(s)	28, 89, 134, 605
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	7 cut(s)	14, 55, 90, 323, 484, 507, 652
SfaNI	GCATC	3 cut(s)	81, 339, 575
SinI	GGWCC	1 cut(s)	114
SmiMI	CAYNNNNRTG	2 cut(s)	150, 590
Sse9I	AATT	5 cut(s)	42, 180, 224, 492, 639
SseBI	AGGCCT	1 cut(s)	251
SsiI	CCGC	6 cut(s)	5, 117, 266, 364, 457, 618
SspMI	CTAG	1 cut(s)	122
StuI	AGGCCT	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	90
TaiI	ACGT	2 cut(s)	55, 90
TaqI	TCGA	1 cut(s)	582
TasI	AATT	5 cut(s)	42, 180, 224, 492, 639
TauI	GCSGC	3 cut(s)	7, 268, 367
Tru1I	TTAA	2 cut(s)	45, 548
Tru9I	TTAA	2 cut(s)	45, 548
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	2 cut(s)	417, 566
TspRI	CASTG	1 cut(s)	115
Van91I	CCANNNNNTGG	1 cut(s)	540
VpaK11BI	GGWCC	1 cut(s)	114
XapI	RAATTY	3 cut(s)	180, 224, 492
XmnI	GAANNNNTTC	1 cut(s)	578
XspI	CTAG	1 cut(s)	122
Zsp2I	ATGCAT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.