Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009227.1

Orthogroup ID

OG0004849

Physical Location & Seq

Genomic Coordinates Reverse (-)

7405 .. 7851

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009227.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgctggcacacctgcgcacactctcaaaagagacagttttcacccatactggttttggagccaaacattttggcacgcccagtgggactgcactagagtctttttgtatcaaccattattgggatgccaaaggaaaatctttaccaaaagaaattcctgaagtcatgcctgtttttctcaagaagaagaagtgcaaattcctaaacttctcaaagtgcaaggcctccagttacgagccgcatagaactgatggtgacgctgctgctgcagatgacgaggtgacaatagaaggctatgtgtgcattcctgtcccagagaatgcgagcatggaggaacgaattgctatctttcagcagaacactgcttcgttctatgcgaagtttgacaaggtccttgcggaacaacaaaagaggatggaggagcatcaaaagacctgggagctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.81

Weight (kDa)

7.01

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004849)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28630
rosa_chinensis	RchiOBHm_Chr7g0195851
rosa_laevigata	RLG00000012332 RLG00000021565
rosa_multiflora	Rmu_co8209098.1_g000002 Rmu_sc0001551.1_g000016 Rmu_sc0002187.1_g000063 Rmu_sc0002187.1_g000066 Rmu_sc0002563.1_g000070 Rmu_sc0002717.1_g000010 Rmu_sc0003679.1_g000003 Rmu_sc0005003.1_g000005 Rmu_sc0005044.1_g000021 Rmu_sc0005044.1_g000023 Rmu_sc0005392.1_g000004 Rmu_sc0008245.1_g000018 Rmu_sc0008382.1_g000004 Rmu_sc0009227.1_g000002 Rmu_sc0017888.1_g000005
rosa_roxburghii	Rroxscaffold_176G00430960 Rroxscaffold_1G00004060 Rroxscaffold_6G00395070
rosa_samantha	Rh1CG420700 Rh1CG433300 Rh1DG437400 Rh2DG297400 Rh3AG107900 Rh3CG113700 Rh4CG269700 Rh5AG124400 Rh6AG162600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	21
Acc16I	TGCGCA	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	21
AciI	CCGC	2 cut(s)	239, 398
AcsI	RAATTY	2 cut(s)	153, 197
AcuI	CTGAAG	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	434
AluBI	AGCT	1 cut(s)	442
AluI	AGCT	1 cut(s)	442
Alw26I	GTCTC	1 cut(s)	26
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	3 cut(s)	260, 263, 266
ApoI	RAATTY	2 cut(s)	153, 197
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	391
AsuHPI	GGTGA	3 cut(s)	34, 266, 292
AvaII	GGWCC	1 cut(s)	391
BbvI	GCAGC	3 cut(s)	247, 250, 253
BccI	CCATC	2 cut(s)	245, 409
BciT130I	CCWGG	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	21
BisI	GCNGC	4 cut(s)	239, 261, 264, 267
BlsI	GCNGC	4 cut(s)	240, 262, 265, 268
Bme1390I	CCNGG	1 cut(s)	436
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	436
BmrI	ACTGGG	1 cut(s)	75
BmsI	GCATC	2 cut(s)	115, 433
BmuI	ACTGGG	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	3 cut(s)	55, 81, 228
BseBI	CCWGG	1 cut(s)	436
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	2 cut(s)	130, 420
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseNI	ACTGG	3 cut(s)	55, 81, 228
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	3 cut(s)	247, 250, 253
BsgI	GTGCAG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	224
BslFI	GGGAC	2 cut(s)	100, 296
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	2 cut(s)	100, 296
BsmI	GAATGC	2 cut(s)	303, 325
BsnI	GGCC	1 cut(s)	224
BspACI	CCGC	2 cut(s)	239, 398
BspANI	GGCC	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	61
BspMAI	CTGCAG	1 cut(s)	271
BspMI	ACCTGC	1 cut(s)	21
BsrI	ACTGG	3 cut(s)	55, 81, 228
BssECI	CCNNGG	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	436
Bst4CI	ACNGT	1 cut(s)	37
BstC8I	GCNNGC	3 cut(s)	6, 77, 325
BstF5I	GGATG	2 cut(s)	130, 420
BstHHI	GCGC	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 300
BstNI	CCWGG	1 cut(s)	436
BstSCI	CCNGG	1 cut(s)	434
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	3 cut(s)	247, 250, 253
BsuRI	GGCC	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	130, 420
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	88, 360
BveI	ACCTGC	1 cut(s)	21
Cac8I	GCNNGC	3 cut(s)	6, 77, 325
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	391
CseI	GACGC	1 cut(s)	266
CviAII	CATG	2 cut(s)	166, 328
CviJI	RGCY	5 cut(s)	62, 224, 238, 294, 442
CviKI_1	RGCY	5 cut(s)	62, 224, 238, 294, 442
Eco147I	AGGCCT	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	434
FaeI	CATG	2 cut(s)	169, 331
FaiI	YATR	6 cut(s)	48, 167, 243, 297, 329, 375
FaqI	GGGAC	2 cut(s)	100, 296
FatI	CATG	2 cut(s)	165, 327
Fnu4HI	GCNGC	4 cut(s)	239, 261, 264, 267
FokI	GGATG	2 cut(s)	137, 427
Fsp4HI	GCNGC	4 cut(s)	239, 261, 264, 267
FspBI	CTAG	1 cut(s)	95
FspI	TGCGCA	1 cut(s)	17
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	4 cut(s)	239, 261, 264, 267
GsuI	CTGGAG	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	224
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	2 cut(s)	169, 331
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HinfI	GANTC	1 cut(s)	98
HphI	GGTGA	3 cut(s)	34, 266, 292
Hpy188III	TCNNGA	2 cut(s)	158, 181
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	5 cut(s)	92, 195, 219, 269, 303
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 300
Hsp92II	CATG	2 cut(s)	169, 331
HspAI	GCGC	1 cut(s)	16
LmnI	GCTCC	3 cut(s)	59, 421, 439
LpnPI	CCDG	9 cut(s)	26, 36, 94, 171, 183, 241, 321, 327, 421
Lsp1109I	GCAGC	3 cut(s)	247, 250, 253
LweI	GCATC	2 cut(s)	115, 433
MaeI	CTAG	1 cut(s)	95
MaeIII	GTNAC	3 cut(s)	230, 254, 280
MboII	GAAGA	2 cut(s)	196, 199
MluCI	AATT	3 cut(s)	153, 197, 339
MlyI	GAGTC	1 cut(s)	107
MnlI	CCTC	5 cut(s)	235, 271, 325, 405, 412
MspR9I	CCNGG	1 cut(s)	436
Mva1269I	GAATGC	2 cut(s)	303, 325
MvaI	CCWGG	1 cut(s)	436
MwoI	GCNNNNNNNGC	2 cut(s)	266, 300
NlaIII	CATG	2 cut(s)	169, 331
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	2 cut(s)	254, 280
NsbI	TGCGCA	1 cut(s)	17
PaqCI	CACCTGC	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	374
PctI	GAATGC	2 cut(s)	303, 325
PflFI	GACNNNGTC	1 cut(s)	389
PkrI	GCNGC	4 cut(s)	240, 262, 265, 268
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PpuMI	RGGWCCY	1 cut(s)	391
Psp5II	RGGWCCY	1 cut(s)	391
Psp6I	CCWGG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	391
PspPPI	RGGWCCY	1 cut(s)	391
PstI	CTGCAG	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	389
SatI	GCNGC	4 cut(s)	239, 261, 264, 267
Sau96I	GGNCC	1 cut(s)	391
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	436
SetI	ASST	5 cut(s)	15, 282, 393, 437, 444
SfaNI	GCATC	2 cut(s)	115, 433
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	1 cut(s)	391
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	3 cut(s)	153, 197, 339
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	2 cut(s)	239, 398
SspMI	CTAG	1 cut(s)	95
StuI	AGGCCT	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	434
TaaI	ACNGT	1 cut(s)	37
TasI	AATT	3 cut(s)	153, 197, 339
TauI	GCSGC	1 cut(s)	241
TscAI	CASTG	2 cut(s)	88, 367
TseFI	GTSAC	2 cut(s)	254, 280
TseI	GCWGC	3 cut(s)	260, 263, 266
Tsp45I	GTSAC	2 cut(s)	254, 280
TspRI	CASTG	2 cut(s)	88, 367
Tth111I	GACNNNGTC	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	2 cut(s)	153, 197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.