Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004849

Physical Location & Seq

Genomic Coordinates Forward (+)

25373364 .. 25373819

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG162600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGACGACGAGGATCAGCATCTCCATTACCGCCATTGCCCTCTACCTCACCATCTCCGTCCTCCTCCAACTCCTCCTCGCCCTCCTCCGTTGCCCGGGTCGACCCATCCCTCTCAGACCTATCCCCACCCTCCGCTCCCTCCTCATGACCCTCCTCTCCTTCACCATCTTAGTCGGCATCAACCTCTTCCGCTGGTTCTTGCAGCACTCCAAAACCCATGAAATTGATGGTGAGATTCAAATAGATTGGGATAGAGAAATGAAAGGGGAATCAAGGAAAACAAGATTGGAGGAATTAAAAGGAGTGATGGATTTGGAAGGGGAAAAAATTGAAACTGAAACGTTGGGTTTCTGTTTAGTGCAACTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGAGACAGATCGAGGGGGGAGACAGAGAGAGAGAGGGAGAGAGGAAAAAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0001101 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009922 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019367 GO:0019368 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0032870 GO:0033993 GO:0034625 GO:0034626 GO:0042175 GO:0042221 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0050896 GO:0051716 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0072330 GO:0097305 GO:0097306 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELO

Protein Analysis

151

Amino Acids

17.47

Weight (kDa)

9.88

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004849)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28630
rosa_chinensis	RchiOBHm_Chr7g0195851
rosa_laevigata	RLG00000012332 RLG00000021565
rosa_multiflora	Rmu_co8209098.1_g000002 Rmu_sc0001551.1_g000016 Rmu_sc0002187.1_g000063 Rmu_sc0002187.1_g000066 Rmu_sc0002563.1_g000070 Rmu_sc0002717.1_g000010 Rmu_sc0003679.1_g000003 Rmu_sc0005003.1_g000005 Rmu_sc0005044.1_g000021 Rmu_sc0005044.1_g000023 Rmu_sc0005392.1_g000004 Rmu_sc0008245.1_g000018 Rmu_sc0008382.1_g000004 Rmu_sc0009227.1_g000002 Rmu_sc0017888.1_g000005
rosa_roxburghii	Rroxscaffold_176G00430960 Rroxscaffold_1G00004060 Rroxscaffold_6G00395070
rosa_samantha	Rh1CG420700 Rh1CG433300 Rh1DG437400 Rh2DG297400 Rh3AG107900 Rh3CG113700 Rh4CG269700 Rh5AG124400 Rh6AG162600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	135
AccI	GTMKAC	1 cut(s)	100
AciI	CCGC	3 cut(s)	30, 133, 190
AclI	AACGTT	1 cut(s)	341
AclWI	GGATC	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	239, 332
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
Alw26I	GTCTC	2 cut(s)	397, 414
AlwI	GGATC	1 cut(s)	20
Ama87I	CYCGRG	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	202
AsuC2I	CCSGG	2 cut(s)	95, 96
AsuHPI	GGTGA	3 cut(s)	40, 154, 242
AvaI	CYCGRG	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	5 cut(s)	59, 113, 173, 221, 301
BcnI	CCSGG	2 cut(s)	95, 96
BcoDI	GTCTC	2 cut(s)	397, 414
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	2 cut(s)	95, 96
BmeT110I	CYCGRG	1 cut(s)	94
BmrFI	CCNGG	2 cut(s)	95, 96
BmsI	GCATC	2 cut(s)	27, 186
BpuMI	CCSGG	2 cut(s)	95, 96
BsaBI	GATNNNNATC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	33
Bse8I	GATNNNNATC	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	1 cut(s)	105
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	127
BseRI	GAGGAG	6 cut(s)	53, 62, 65, 74, 131, 143
BseXI	GCAGC	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	2 cut(s)	397, 414
BsoBI	CYCGRG	1 cut(s)	94
Bsp143I	GATC	2 cut(s)	12, 408
BspACI	CCGC	3 cut(s)	30, 133, 190
BspCNI	CTCAG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	144
BspPI	GGATC	1 cut(s)	20
BsrBI	CCGCTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	2 cut(s)	12, 408
Bst6I	CTCTTC	1 cut(s)	191
BstDEI	CTNAG	2 cut(s)	113, 169
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	2 cut(s)	15, 411
BstMAI	GTCTC	2 cut(s)	397, 414
BstMBI	GATC	2 cut(s)	12, 408
BstSCI	CCNGG	2 cut(s)	93, 94
BstV1I	GCAGC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	105
CciI	TCATGA	1 cut(s)	144
Cfr9I	CCCGGG	1 cut(s)	94
CviAII	CATG	2 cut(s)	145, 218
DdeI	CTNAG	2 cut(s)	113, 169
DpnI	GATC	2 cut(s)	14, 410
DpnII	GATC	2 cut(s)	12, 408
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	94
FaeI	CATG	2 cut(s)	148, 221
FaiI	YATR	2 cut(s)	146, 219
FatI	CATG	2 cut(s)	144, 217
FblI	GTMKAC	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	203
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	2 cut(s)	148, 221
HincII	GTYRAC	1 cut(s)	101
HindII	GTYRAC	1 cut(s)	101
HinfI	GANTC	2 cut(s)	235, 269
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	3 cut(s)	40, 154, 242
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	1 cut(s)	101
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	169, 311, 391
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	2 cut(s)	202, 361
HpyF3I	CTNAG	2 cut(s)	113, 169
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	2 cut(s)	148, 221
Kzo9I	GATC	2 cut(s)	12, 408
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	2 cut(s)	108, 178
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	2 cut(s)	27, 186
MaeII	ACGT	1 cut(s)	341
MalI	GATC	2 cut(s)	14, 410
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	2 cut(s)	12, 408
MluCI	AATT	3 cut(s)	222, 293, 327
MmeI	TCCRAC	1 cut(s)	91
MseI	TTAA	2 cut(s)	296, 454
MspA1I	CMGCKG	1 cut(s)	192
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	2 cut(s)	95, 96
NciI	CCSGG	2 cut(s)	95, 96
NdeII	GATC	2 cut(s)	12, 408
NlaIII	CATG	2 cut(s)	148, 221
PagI	TCATGA	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	235, 269
PkrI	GCNGC	1 cut(s)	204
Psp1406I	AACGTT	1 cut(s)	341
SalI	GTCGAC	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	296, 454
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	2 cut(s)	12, 408
ScrFI	CCNGG	2 cut(s)	95, 96
SetI	ASST	4 cut(s)	48, 121, 186, 344
SfaNI	GCATC	2 cut(s)	27, 186
SmaI	CCCGGG	1 cut(s)	96
Sse9I	AATT	3 cut(s)	222, 293, 327
SsiI	CCGC	3 cut(s)	30, 133, 190
StyD4I	CCNGG	2 cut(s)	93, 94
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	2 cut(s)	100, 411
TasI	AATT	3 cut(s)	222, 293, 327
TfiI	GAWTC	2 cut(s)	235, 269
Tru1I	TTAA	2 cut(s)	296, 454
Tru9I	TTAA	2 cut(s)	296, 454
TseI	GCWGC	1 cut(s)	202
TspDTI	ATGAA	2 cut(s)	234, 275
TspGWI	ACGGA	2 cut(s)	46, 77
TspMI	CCCGGG	1 cut(s)	94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XmaI	CCCGGG	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.