FvH4_3g32320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004534
Physical Location & Seq
Reverse (-)
27622697 .. 27623248
552 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32320.t1

Sequence Viewer

Length: 228 bp
ATGTTGCCAGATCGATGGCGACGACGCCTAGATCTCGACGCCACTGGATCGTCGACGTCGTATCGGCTCCGTCGTCTCTCATACATCAACAACGCTGGGCCCAGACTCATCATCAGCTGTGGTCGGAGTCGGGAGCTCCTCATCTATCTCTTCTCTGCTTCAATTTCTTCGCCAGACTCCTCCTCATTATCTCCTCCCATTTTTAATTTATTTATGCTACTAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.59

Weight (kDa)

11.1

Isoelectric Point (pI)

80.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 59
AccI GTMKAC 1 cut(s) 53
AclWI GGATC 1 cut(s) 55
AcyI GRCGYC 3 cut(s) 25, 39, 56
AgsI TTSAA 1 cut(s) 162
AluBI AGCT 2 cut(s) 117, 136
AluI AGCT 2 cut(s) 117, 136
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 55
AoxI GGCC 1 cut(s) 98
ApaI GGGCCC 1 cut(s) 102
AspS9I GGNCC 2 cut(s) 98, 99
BaeGI GKGCMC 1 cut(s) 102
BanII GRGCYC 2 cut(s) 102, 138
Bbv12I GWGCWC 1 cut(s) 138
BccI CCATC 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 29
BglII AGATCT 1 cut(s) 31
BmgT120I GGNCC 2 cut(s) 98, 99
BmiI GGNNCC 2 cut(s) 68, 100
Bsa29I ATCGAT 1 cut(s) 13
BsaHI GRCGYC 3 cut(s) 25, 39, 56
Bse1I ACTGG 1 cut(s) 49
BseCI ATCGAT 1 cut(s) 13
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 4 cut(s) 128, 169, 172, 183
BseSI GKGCMC 1 cut(s) 102
BseYI CCCAGC 1 cut(s) 95
BshFI GGCC 1 cut(s) 100
BshVI ATCGAT 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 80
BsmBI CGTCTC 1 cut(s) 80
BsnI GGCC 1 cut(s) 100
Bsp120I GGGCCC 1 cut(s) 98
Bsp1286I GDGCHC 2 cut(s) 102, 138
Bsp143I GATC 3 cut(s) 10, 31, 47
BspANI GGCC 1 cut(s) 100
BspDI ATCGAT 1 cut(s) 13
BspLI GGNNCC 2 cut(s) 68, 100
BspPI GGATC 1 cut(s) 55
BsrI ACTGG 1 cut(s) 49
BssMI GATC 3 cut(s) 10, 31, 47
BssNI GRCGYC 3 cut(s) 25, 39, 56
Bst6I CTCTTC 1 cut(s) 155
BstACI GRCGYC 3 cut(s) 25, 39, 56
BstDEI CTNAG 1 cut(s) 221
BstKTI GATC 3 cut(s) 13, 34, 50
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 3 cut(s) 10, 31, 47
BstSLI GKGCMC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 31
BstXI CCANNNNNNTGG 1 cut(s) 15
BstYI RGATCY 1 cut(s) 31
Bsu15I ATCGAT 1 cut(s) 13
BsuRI GGCC 1 cut(s) 100
BsuTUI ATCGAT 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 42
Cfr13I GGNCC 2 cut(s) 98, 99
ClaI ATCGAT 1 cut(s) 13
CseI GACGC 2 cut(s) 33, 47
CviJI RGCY 4 cut(s) 67, 100, 117, 136
CviKI_1 RGCY 4 cut(s) 67, 100, 117, 136
DdeI CTNAG 1 cut(s) 221
DpnI GATC 3 cut(s) 12, 33, 49
DpnII GATC 3 cut(s) 10, 31, 47
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Ecl136II GAGCTC 1 cut(s) 136
Eco24I GRGCYC 2 cut(s) 102, 138
Eco53kI GAGCTC 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 136
EcoT38I GRGCYC 2 cut(s) 102, 138
Esp3I CGTCTC 1 cut(s) 80
FaiI YATR 2 cut(s) 82, 215
FblI GTMKAC 1 cut(s) 53
FriOI GRGCYC 2 cut(s) 102, 138
FspBI CTAG 1 cut(s) 29
GsaI CCCAGC 1 cut(s) 99
HaeIII GGCC 1 cut(s) 100
HgaI GACGC 2 cut(s) 33, 47
Hin1I GRCGYC 3 cut(s) 25, 39, 56
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 3 cut(s) 105, 127, 176
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 2 cut(s) 35, 131
Hpy8I GTNNAC 1 cut(s) 54
Hpy99I CGWCG 7 cut(s) 24, 27, 41, 55, 58, 61, 75
HpyCH4IV ACGT 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 1 cut(s) 56
Hsp92I GRCGYC 3 cut(s) 25, 39, 56
Kzo9I GATC 3 cut(s) 10, 31, 47
LmnI GCTCC 3 cut(s) 72, 133, 141
LpnPI CCDG 5 cut(s) 21, 30, 81, 115, 186
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 56
MalI GATC 3 cut(s) 12, 33, 49
MboI GATC 3 cut(s) 10, 31, 47
MboII GAAGA 2 cut(s) 142, 159
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 2 cut(s) 102, 138
MluCI AATT 2 cut(s) 162, 205
MlyI GAGTC 3 cut(s) 99, 136, 170
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 4 cut(s) 149, 190, 193, 204
MseI TTAA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 117
NdeII GATC 3 cut(s) 10, 31, 47
NlaIV GGNNCC 2 cut(s) 68, 100
PcsI WCGNNNNNNNCGW 3 cut(s) 19, 56, 70
PleI GAGTC 3 cut(s) 99, 135, 170
PpsI GAGTC 3 cut(s) 99, 135, 170
Psp124BI GAGCTC 1 cut(s) 138
PspFI CCCAGC 1 cut(s) 95
PspN4I GGNNCC 2 cut(s) 68, 100
PspOMI GGGCCC 1 cut(s) 98
PspPI GGNCC 2 cut(s) 98, 99
PsuI RGATCY 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 117
SacI GAGCTC 1 cut(s) 138
SalI GTCGAC 1 cut(s) 52
SaqAI TTAA 1 cut(s) 204
Sau3AI GATC 3 cut(s) 10, 31, 47
Sau96I GGNCC 2 cut(s) 98, 99
SchI GAGTC 3 cut(s) 99, 136, 170
SduI GDGCHC 2 cut(s) 102, 138
SetI ASST 3 cut(s) 59, 119, 138
SgeI CNNG 8 cut(s) 20, 41, 47, 57, 108, 114, 143, 185
SgrDI CGTCGACG 1 cut(s) 52
Sse9I AATT 2 cut(s) 162, 205
SspMI CTAG 1 cut(s) 29
SstI GAGCTC 1 cut(s) 138
TaiI ACGT 1 cut(s) 59
TaqI TCGA 3 cut(s) 13, 36, 53
TasI AATT 2 cut(s) 162, 205
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 49
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 53
XspI CTAG 1 cut(s) 29
ZraI GACGTC 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.