Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004534

Physical Location & Seq

Genomic Coordinates Reverse (-)

28225337 .. 28233882

Gene Structure 8546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGATGAAGAACCGAGAGAGACTGCAAGAAGTAGCACATGGTGGAGATTATGGTCTCGGCAAAACTGATAGAGGCAACAAATCTCGCGGCGTAGTATCGGGACCCTTGCTAGTAATTCATGGAATGGGCACTATGGTGGCAAGGTCGATGGATTGGAACAATCTTGATGAGGAGATTAATAGAAGGATGCGAGAGAGCAGGAAGAAAAAGAAGGAAGATGACGATGACGGAGAGCTGAATGGATCTAGCCGGGCATTTGAAATCAAAGGAGAAGAGCTACTTGCCGGTTCGAACATTCCAAAGCTTTGCGGCGTAGTCACCGCTACCCGTCATGAGGCGCGAGAAGTCTCTCGGAGACATTGCAACACCAAACAGCTCCGCCGCAGCCGAGGGCCTCCACCGTGGAGCTCGACATCCGCGCCGATGGCTCGTTATTTAGAAGTTTTTGCGAAGGCTTGGGATGCCTTTGACAGCGTCGATTTCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

18.23

Weight (kDa)

9.39

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004534)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31500 FvH4_3g32320 FvH4_4g00690 FvH4_4g27850 FvH4_7g10870 FvH4_7g10870 FvH4_7g10870
malus_domestica	MD16G1010500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113071 RchiOBHm_Chr7g0220371
rosa_laevigata	RLG00000001298 RLG00000002502 RLG00000028412 RLG00000031890
rosa_multiflora	Rmu_ssc0000390.1_g000001
rosa_roxburghii	Rroxscaffold_153G00436800 Rroxscaffold_153G00436810 Rroxscaffold_1G00031690 Rroxscaffold_2G00104890 Rroxscaffold_2G00148900
rosa_rugosa	Rorug03G0199500 Rorug03G0364300.1 Rorug04G0059300 Rorug05G0361500 Rorug06G0155900
rosa_samantha	Rh1BG179800 Rh2DG595900 Rh3BG075300 Rh4DG164000 Rh6AG040200 Rh7AG433700 Rh7BG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	87, 340, 419
AciI	CCGC	6 cut(s)	87, 309, 321, 379, 382, 417
AclWI	GGATC	1 cut(s)	250
AdeI	CACNNNGTG	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgsI	TTSAA	1 cut(s)	260
AleI	CACNNNNGTG	1 cut(s)	134
AluBI	AGCT	6 cut(s)	235, 277, 304, 376, 408, 486
AluI	AGCT	6 cut(s)	235, 277, 304, 376, 408, 486
Alw21I	GWGCWC	1 cut(s)	410
Alw26I	GTCTC	4 cut(s)	13, 59, 349, 352
AlwI	GGATC	1 cut(s)	250
AoxI	GGCC	1 cut(s)	392
ApeKI	GCWGC	1 cut(s)	384
AseI	ATTAAT	1 cut(s)	177
AspLEI	GCGC	2 cut(s)	340, 421
AspS9I	GGNCC	2 cut(s)	101, 392
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	310
AsuII	TTCGAA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	410
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	2 cut(s)	142, 418
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	4 cut(s)	13, 59, 349, 352
BfaI	CTAG	3 cut(s)	110, 246, 487
BisI	GCNGC	4 cut(s)	88, 310, 382, 385
BlsI	GCNGC	4 cut(s)	89, 311, 383, 386
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	2 cut(s)	101, 392
BmiI	GGNNCC	2 cut(s)	102, 103
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	2 cut(s)	177, 451
Bpu14I	TTCGAA	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	388, 401
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse118I	RCCGGY	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	358
BseDI	CCNNGG	2 cut(s)	388, 401
BseGI	GGATG	3 cut(s)	192, 413, 466
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMI	GCAATG	1 cut(s)	358
BseRI	GAGGAG	1 cut(s)	185
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	396
Bsh1236I	CGCG	3 cut(s)	87, 340, 419
BshFI	GGCC	1 cut(s)	394
BsiHKAI	GWGCWC	1 cut(s)	410
BsiSI	CCGG	2 cut(s)	250, 285
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmAI	GTCTC	4 cut(s)	13, 59, 349, 352
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	394
Bso31I	GGTCTC	1 cut(s)	59
Bsp119I	TTCGAA	1 cut(s)	290
Bsp1286I	GDGCHC	2 cut(s)	131, 410
Bsp143I	GATC	1 cut(s)	242
BspACI	CCGC	6 cut(s)	87, 309, 321, 379, 382, 417
BspANI	GGCC	1 cut(s)	394
BspFNI	CGCG	3 cut(s)	87, 340, 419
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	102, 103
BspPI	GGATC	1 cut(s)	250
BspQI	GCTCTTC	1 cut(s)	267
BspT104I	TTCGAA	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	358
BsrFI	RCCGGY	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	388, 401
BssMI	GATC	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	402
Bst6I	CTCTTC	1 cut(s)	267
BstBI	TTCGAA	1 cut(s)	290
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	3 cut(s)	192, 413, 466
BstFNI	CGCG	3 cut(s)	87, 340, 419
BstHHI	GCGC	2 cut(s)	340, 421
BstKTI	GATC	1 cut(s)	245
BstMAI	GTCTC	4 cut(s)	13, 59, 349, 352
BstMBI	GATC	1 cut(s)	242
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 461
BstSCI	CCNGG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	131
BstUI	CGCG	3 cut(s)	87, 340, 419
BstV1I	GCAGC	1 cut(s)	396
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BsuRI	GGCC	1 cut(s)	394
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	3 cut(s)	192, 413, 466
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	2 cut(s)	340, 421
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	2 cut(s)	101, 392
CseI	GACGC	1 cut(s)	463
CviAII	CATG	3 cut(s)	38, 119, 332
DpnI	GATC	1 cut(s)	244
DpnII	GATC	1 cut(s)	242
DraIII	CACNNNGTG	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
EciI	GGCGGA	1 cut(s)	368
Ecl136II	GAGCTC	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	410
Eco31I	GGTCTC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	408
EcoICRI	GAGCTC	1 cut(s)	408
EcoO109I	RGGNCCY	2 cut(s)	101, 392
EcoT38I	GRGCYC	1 cut(s)	410
FaeI	CATG	3 cut(s)	41, 122, 335
FaiI	YATR	5 cut(s)	39, 51, 120, 134, 333
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	3 cut(s)	37, 118, 331
Fnu4HI	GCNGC	4 cut(s)	88, 310, 382, 385
FokI	GGATG	3 cut(s)	199, 400, 473
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	4 cut(s)	88, 310, 382, 385
FspBI	CTAG	3 cut(s)	110, 246, 487
GlaI	GCGC	2 cut(s)	339, 420
GluI	GCNGC	4 cut(s)	88, 310, 382, 385
HaeIII	GGCC	1 cut(s)	394
HapII	CCGG	2 cut(s)	250, 285
HgaI	GACGC	1 cut(s)	463
HhaI	GCGC	2 cut(s)	340, 421
Hin1II	CATG	3 cut(s)	41, 122, 335
Hin6I	GCGC	2 cut(s)	338, 419
HinP1I	GCGC	2 cut(s)	338, 419
HindIII	AAGCTT	1 cut(s)	302
HpaII	CCGG	2 cut(s)	250, 285
HphI	GGTGA	1 cut(s)	310
Hpy188I	TCNGA	1 cut(s)	354
Hpy188III	TCNNGA	3 cut(s)	99, 164, 332
Hpy99I	CGWCG	1 cut(s)	479
HpyAV	CCTTC	3 cut(s)	177, 205, 445
HpyCH4III	ACNGT	1 cut(s)	402
HpyCH4V	TGCA	2 cut(s)	25, 363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 461
Hsp92II	CATG	3 cut(s)	41, 122, 335
HspAI	GCGC	2 cut(s)	338, 419
KflI	GGGWCCC	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	242
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	2 cut(s)	381, 405
LpnPI	CCDG	3 cut(s)	184, 263, 298
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	2 cut(s)	177, 451
MaeI	CTAG	3 cut(s)	110, 246, 487
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	1 cut(s)	244
MboI	GATC	1 cut(s)	242
MboII	GAAGA	4 cut(s)	19, 214, 227, 284
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	2 cut(s)	131, 410
MluCI	AATT	1 cut(s)	114
MnlI	CCTC	5 cut(s)	65, 163, 328, 383, 405
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	134
MspI	CCGG	2 cut(s)	250, 285
MspR9I	CCNGG	1 cut(s)	251
MvnI	CGCG	3 cut(s)	87, 340, 419
MwoI	GCNNNNNNNGC	2 cut(s)	425, 461
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	1 cut(s)	242
NlaIII	CATG	3 cut(s)	41, 122, 335
NlaIV	GGNNCC	2 cut(s)	102, 103
NmeAIII	GCCGAG	2 cut(s)	36, 413
NmuCI	GTSAC	1 cut(s)	316
NspV	TTCGAA	1 cut(s)	290
OliI	CACNNNNGTG	1 cut(s)	134
PagI	TCATGA	1 cut(s)	331
PciSI	GCTCTTC	1 cut(s)	267
PflFI	GACNNNGTC	1 cut(s)	473
PkrI	GCNGC	4 cut(s)	89, 311, 383, 386
PpuMI	RGGWCCY	1 cut(s)	101
PshBI	ATTAAT	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	410
Psp5II	RGGWCCY	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	102, 103
PspPI	GGNCC	2 cut(s)	101, 392
PspPPI	RGGWCCY	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	242
PsyI	GACNNNGTC	1 cut(s)	473
RseI	CAYNNNNRTG	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	410
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	4 cut(s)	88, 310, 382, 385
Sau3AI	GATC	1 cut(s)	242
Sau96I	GGNCC	2 cut(s)	101, 392
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	2 cut(s)	131, 410
SetI	ASST	7 cut(s)	146, 237, 279, 306, 378, 410, 488
SfaNI	GCATC	2 cut(s)	177, 451
SfuI	TTCGAA	1 cut(s)	290
SinI	GGWCC	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	114
SsiI	CCGC	6 cut(s)	87, 309, 321, 379, 382, 417
SspMI	CTAG	3 cut(s)	110, 246, 487
SstI	GAGCTC	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	402
TaqI	TCGA	4 cut(s)	146, 290, 410, 477
TasI	AATT	1 cut(s)	114
TauI	GCSGC	3 cut(s)	90, 312, 384
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	1 cut(s)	384
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	2 cut(s)	20, 107
TspGWI	ACGGA	1 cut(s)	243
Tth111I	GACNNNGTC	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	101
VspI	ATTAAT	1 cut(s)	177
XspI	CTAG	3 cut(s)	110, 246, 487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.