Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004534

Physical Location & Seq

Genomic Coordinates Reverse (-)

9251485 .. 9263939

Gene Structure 12455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0059300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTCTTTCACTGCCAACTGTTCTTGTGTGATCATCACCTTGGCCCTAGCAACCTTGACATTAACATTTTCTGAAGGGTACAATGTTCACATCGTCAATCGCTTTTGCAACAACGATAAGCCATTGACTGTTCATTGCAAATCTGGAGACGATGATCTTGGTAACCACACCCTATGGAGAGGTCAGGATTACAACTGGCAATTTAACGGAAACTTTTGGGGTACAACTCTCTTCCACTGCAATATGAAACGGGATTCACAAGAGAGAGACATCAAAGTTTTTAGTATTCCTGATGAGGAACCCTCTGAGTGCATGGAAACCAAGGATTGCTTTTGGTTCGTGAATGAGGATGGTTTCTATGTTGGCAATAAAAAGTTCGATTGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0007049 GO:0008150 GO:0009504 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009612 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0022402 GO:0031224 GO:0032506 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051301 GO:0051704 GO:0051707 GO:0061024 GO:0061025 GO:0061640 GO:0071840 GO:0071944 GO:0097305 GO:1901700 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04130 ko04140 ko04721 ko04911 map04130 map04140 map04721 map04911

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

15.07

Weight (kDa)

5.05

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	28 - 124	2.5e-26	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004534)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31500 FvH4_3g32320 FvH4_4g00690 FvH4_4g27850 FvH4_7g10870 FvH4_7g10870 FvH4_7g10870
malus_domestica	MD16G1010500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113071 RchiOBHm_Chr7g0220371
rosa_laevigata	RLG00000001298 RLG00000002502 RLG00000028412 RLG00000031890
rosa_multiflora	Rmu_ssc0000390.1_g000001
rosa_roxburghii	Rroxscaffold_153G00436800 Rroxscaffold_153G00436810 Rroxscaffold_1G00031690 Rroxscaffold_2G00104890 Rroxscaffold_2G00148900
rosa_rugosa	Rorug03G0199500 Rorug03G0364300.1 Rorug04G0059300 Rorug05G0361500 Rorug06G0155900
rosa_samantha	Rh1BG179800 Rh2DG595900 Rh3BG075300 Rh4DG164000 Rh6AG040200 Rh7AG433700 Rh7BG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	2 cut(s)	80, 223
Alw26I	GTCTC	2 cut(s)	141, 261
AoxI	GGCC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	28
BccI	CCATC	1 cut(s)	344
BclI	TGATCA	1 cut(s)	30
BcoDI	GTCTC	2 cut(s)	141, 261
BfaI	CTAG	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	300
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpmI	CTGGAG	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	39, 321
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	133
BseDI	CCNNGG	2 cut(s)	39, 321
BseGI	GGATG	1 cut(s)	355
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	141, 261
BsmBI	CGTCTC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	30, 154
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	298
BspLI	GGNNCC	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	39, 321
BssMI	GATC	2 cut(s)	30, 154
BssT1I	CCWWGG	2 cut(s)	39, 321
Bst4CI	ACNGT	2 cut(s)	20, 130
Bst6I	CTCTTC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	306
BstEII	GGTNACC	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	355
BstKTI	GATC	2 cut(s)	33, 157
BstMAI	GTCTC	2 cut(s)	141, 261
BstMBI	GATC	2 cut(s)	30, 154
BstPI	GGTNACC	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	355
BtsI	GCAGTG	2 cut(s)	9, 235
BtsIMutI	CAGTG	2 cut(s)	9, 235
Cfr13I	GGNCC	1 cut(s)	43
Csp6I	GTAC	2 cut(s)	79, 222
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	2 cut(s)	44, 121
CviKI_1	RGCY	2 cut(s)	44, 121
CviQI	GTAC	2 cut(s)	79, 222
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	2 cut(s)	32, 156
DpnII	GATC	2 cut(s)	30, 154
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Eco130I	CCWWGG	2 cut(s)	39, 321
Eco57I	CTGAAG	1 cut(s)	93
Eco91I	GGTNACC	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	161
EcoT14I	CCWWGG	2 cut(s)	39, 321
ErhI	CCWWGG	2 cut(s)	39, 321
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	1 cut(s)	316
FaiI	YATR	4 cut(s)	175, 245, 314, 360
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FatI	CATG	1 cut(s)	312
FbaI	TGATCA	1 cut(s)	30
FokI	GGATG	1 cut(s)	362
FspBI	CTAG	1 cut(s)	47
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	316
HinfI	GANTC	1 cut(s)	254
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	73, 307
Hpy188III	TCNNGA	4 cut(s)	144, 185, 290, 340
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	2 cut(s)	20, 130
HpyCH4V	TGCA	4 cut(s)	108, 138, 240, 312
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	316
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	30, 154
LpnPI	CCDG	4 cut(s)	129, 170, 181, 303
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	2 cut(s)	32, 156
MboI	GATC	2 cut(s)	30, 154
MboII	GAAGA	1 cut(s)	223
MluCI	AATT	1 cut(s)	200
MnlI	CCTC	4 cut(s)	173, 289, 313, 340
MseI	TTAA	2 cut(s)	62, 204
NdeII	GATC	2 cut(s)	30, 154
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	254
PspEI	GGTNACC	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	43
RsaI	GTAC	2 cut(s)	80, 223
RsaNI	GTAC	2 cut(s)	79, 222
SaqAI	TTAA	2 cut(s)	62, 204
Sau3AI	GATC	2 cut(s)	30, 154
Sau96I	GGNCC	1 cut(s)	43
SetI	ASST	3 cut(s)	41, 56, 184
Sse9I	AATT	1 cut(s)	200
SspMI	CTAG	1 cut(s)	47
StyI	CCWWGG	2 cut(s)	39, 321
TaaI	ACNGT	2 cut(s)	20, 130
TaqI	TCGA	1 cut(s)	378
TasI	AATT	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	2 cut(s)	62, 204
Tru9I	TTAA	2 cut(s)	62, 204
TscAI	CASTG	2 cut(s)	16, 242
TspDTI	ATGAA	2 cut(s)	122, 260
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	2 cut(s)	16, 242
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.