Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004534

Physical Location & Seq

Genomic Coordinates Forward (+)

28655566 .. 28660028

Gene Structure 4463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g27850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTTGCCAGATCGATGGCGACGACGCCTAGATCTCGACGCCGCTGGATCGTTGACGTCGTATCGGCTCCGTCGTCTCTCATACATCAACAACGCTCGGCCCAGACTCATCATCAGCTGTGGTCGGAGTCGGGAGCTCCTCATCTATCTCTTCTCTGCTTCAATTTCTTCGCCAGACTCCTCCTCATTATCTCTTCCCATTTTTAATTTTCTTGAAGCTTTGAACAAGGTCAGGGCCAAAGATGTGCAGCTTGGAAACAGAATGTCTTCAAGAAGAAGATTTTTTCAGAATTTGAATCACGAAGAGGCATCAGGTGTTTCTATAACTTTTGGAAACAACGATGGAAATACATCGGACCAAATGGATGAGCCAATGAGCAACCTTGGACGAAGTGCTAATCACAATATGCATCTTGGAAGTCGAAAGTCATTAAGGAATATATATTTCCAACAATTGGATAACGAGGGAACAGTAGGCACTTCTGAAACTTTTGAATCTGAGCAAAATGACAATTGTCTTCATTTGGTCAAGCACACTATCAAAGACAGAAACAAGGTATTATTATTGAGTACAAAGATTTCAGAGATAATACATTTCAATGTATTCATTGCGGTGCGTATTATTGGCGAGATGAAGAGAACGCACATGGAGTCTACACTGGTTGTTGTAAGCAAGGACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

25.93

Weight (kDa)

9.77

Isoelectric Point (pI)

59.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004534)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31500 FvH4_3g32320 FvH4_4g00690 FvH4_4g27850 FvH4_7g10870 FvH4_7g10870 FvH4_7g10870
malus_domestica	MD16G1010500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113071 RchiOBHm_Chr7g0220371
rosa_laevigata	RLG00000001298 RLG00000002502 RLG00000028412 RLG00000031890
rosa_multiflora	Rmu_ssc0000390.1_g000001
rosa_roxburghii	Rroxscaffold_153G00436800 Rroxscaffold_153G00436810 Rroxscaffold_1G00031690 Rroxscaffold_2G00104890 Rroxscaffold_2G00148900
rosa_rugosa	Rorug03G0199500 Rorug03G0364300.1 Rorug04G0059300 Rorug05G0361500 Rorug06G0155900
rosa_samantha	Rh1BG179800 Rh2DG595900 Rh3BG075300 Rh4DG164000 Rh6AG040200 Rh7AG433700 Rh7BG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	59
AccB7I	CCANNNNNTGG	1 cut(s)	454
AccI	GTMKAC	1 cut(s)	653
AciI	CCGC	2 cut(s)	42, 611
AclWI	GGATC	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	289
AcyI	GRCGYC	3 cut(s)	25, 39, 56
AfaI	GTAC	1 cut(s)	571
AfiI	CCNNNNNNNGG	1 cut(s)	454
AgsI	TTSAA	7 cut(s)	162, 215, 223, 270, 295, 494, 598
AluBI	AGCT	4 cut(s)	117, 136, 218, 250
AluI	AGCT	4 cut(s)	117, 136, 218, 250
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	55
AoxI	GGCC	2 cut(s)	98, 234
ApeKI	GCWGC	1 cut(s)	247
ApoI	RAATTY	1 cut(s)	289
Asp700I	GAANNNNTTC	1 cut(s)	265
AspS9I	GGNCC	3 cut(s)	99, 234, 355
AvaII	GGWCC	1 cut(s)	355
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	2 cut(s)	258, 509
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	2 cut(s)	9, 335
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	29
BglII	AGATCT	1 cut(s)	31
BisI	GCNGC	2 cut(s)	42, 248
BlsI	GCNGC	2 cut(s)	43, 249
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	3 cut(s)	99, 234, 355
BmiI	GGNNCC	1 cut(s)	68
BmsI	GCATC	2 cut(s)	317, 418
BoxI	GACNNNNGTC	1 cut(s)	513
BpiI	GAAGAC	2 cut(s)	258, 509
Bsa29I	ATCGAT	1 cut(s)	13
BsaHI	GRCGYC	3 cut(s)	25, 39, 56
BsaJI	CCNNGG	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	1 cut(s)	663
Bse3DI	GCAATG	1 cut(s)	606
BseCI	ATCGAT	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMI	GCAATG	1 cut(s)	606
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	1 cut(s)	663
BseRI	GAGGAG	3 cut(s)	128, 169, 172
BseXI	GCAGC	1 cut(s)	259
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	2 cut(s)	100, 236
BshVI	ATCGAT	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	1 cut(s)	80
BsmBI	CGTCTC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	100, 236
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	10, 31, 47
BspACI	CCGC	2 cut(s)	42, 611
BspANI	GGCC	2 cut(s)	100, 236
BspCNI	CTCAG	1 cut(s)	490
BspDI	ATCGAT	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	68
BspPI	GGATC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	606
BsrI	ACTGG	1 cut(s)	663
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	3 cut(s)	10, 31, 47
BssNI	GRCGYC	3 cut(s)	25, 39, 56
BssT1I	CCWWGG	1 cut(s)	382
Bst4CI	ACNGT	1 cut(s)	472
Bst6I	CTCTTC	4 cut(s)	155, 198, 297, 629
BstACI	GRCGYC	3 cut(s)	25, 39, 56
BstDEI	CTNAG	1 cut(s)	498
BstF5I	GGATG	1 cut(s)	370
BstKTI	GATC	3 cut(s)	13, 34, 50
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	3 cut(s)	10, 31, 47
BstPAI	GACNNNNGTC	1 cut(s)	513
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	2 cut(s)	258, 509
BstX2I	RGATCY	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	31
Bsu15I	ATCGAT	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	100, 236
BsuTUI	ATCGAT	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	656
Cfr13I	GGNCC	3 cut(s)	99, 234, 355
ClaI	ATCGAT	1 cut(s)	13
CseI	GACGC	2 cut(s)	33, 47
Csp6I	GTAC	1 cut(s)	570
CviAII	CATG	1 cut(s)	646
CviJI	RGCY	8 cut(s)	67, 100, 117, 136, 218, 236, 250, 370
CviKI_1	RGCY	8 cut(s)	67, 100, 117, 136, 218, 236, 250, 370
CviQI	GTAC	1 cut(s)	570
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	3 cut(s)	12, 33, 49
DpnII	GATC	3 cut(s)	10, 31, 47
Eam1104I	CTCTTC	4 cut(s)	155, 198, 297, 629
EarI	CTCTTC	4 cut(s)	155, 198, 297, 629
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	355
Eco53kI	GAGCTC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	382
EcoT22I	ATGCAT	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	382
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	1 cut(s)	649
FaiI	YATR	6 cut(s)	82, 323, 407, 440, 442, 647
FatI	CATG	1 cut(s)	645
FblI	GTMKAC	1 cut(s)	653
Fnu4HI	GCNGC	2 cut(s)	42, 248
FokI	GGATG	1 cut(s)	377
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	42, 248
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	2 cut(s)	42, 248
HaeIII	GGCC	2 cut(s)	100, 236
HgaI	GACGC	2 cut(s)	33, 47
Hin1I	GRCGYC	3 cut(s)	25, 39, 56
Hin1II	CATG	1 cut(s)	649
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	6 cut(s)	105, 127, 176, 295, 494, 650
Hpy166II	GTNNAC	2 cut(s)	54, 654
Hpy188I	TCNGA	6 cut(s)	126, 288, 355, 484, 499, 583
Hpy188III	TCNNGA	5 cut(s)	35, 131, 212, 270, 299
Hpy8I	GTNNAC	2 cut(s)	54, 654
Hpy99I	CGWCG	5 cut(s)	24, 27, 41, 61, 75
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	247, 409
HpyF3I	CTNAG	1 cut(s)	498
HpySE526I	ACGT	1 cut(s)	56
Hsp92I	GRCGYC	3 cut(s)	25, 39, 56
Hsp92II	CATG	1 cut(s)	649
Kzo9I	GATC	3 cut(s)	10, 31, 47
LmnI	GCTCC	3 cut(s)	72, 133, 141
LpnPI	CCDG	7 cut(s)	21, 30, 115, 186, 217, 297, 644
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	2 cut(s)	317, 418
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	56
MalI	GATC	3 cut(s)	12, 33, 49
MboI	GATC	3 cut(s)	10, 31, 47
MboII	GAAGA	9 cut(s)	142, 159, 185, 258, 285, 288, 314, 509, 646
MfeI	CAATTG	2 cut(s)	452, 511
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	5 cut(s)	162, 205, 289, 452, 511
MlyI	GAGTC	4 cut(s)	99, 136, 170, 659
MmeI	TCCRAC	2 cut(s)	104, 472
MnlI	CCTC	5 cut(s)	149, 190, 193, 298, 457
Mph1103I	ATGCAT	1 cut(s)	411
MroXI	GAANNNNTTC	1 cut(s)	265
MseI	TTAA	2 cut(s)	204, 431
MslI	CAYNNNNRTG	2 cut(s)	597, 611
MspA1I	CMGCKG	2 cut(s)	44, 117
MunI	CAATTG	2 cut(s)	452, 511
NdeII	GATC	3 cut(s)	10, 31, 47
NlaIII	CATG	1 cut(s)	649
NlaIV	GGNNCC	1 cut(s)	68
NmeAIII	GCCGAG	1 cut(s)	76
NsiI	ATGCAT	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	3 cut(s)	19, 56, 70
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	295, 494
PflMI	CCANNNNNTGG	1 cut(s)	454
PkrI	GCNGC	2 cut(s)	43, 249
PleI	GAGTC	4 cut(s)	99, 135, 170, 658
PpsI	GAGTC	4 cut(s)	99, 135, 170, 658
PshAI	GACNNNNGTC	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	3 cut(s)	99, 234, 355
PsuI	RGATCY	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	117
RsaI	GTAC	1 cut(s)	571
RsaNI	GTAC	1 cut(s)	570
RseI	CAYNNNNRTG	2 cut(s)	597, 611
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	2 cut(s)	204, 431
SatI	GCNGC	2 cut(s)	42, 248
Sau3AI	GATC	3 cut(s)	10, 31, 47
Sau96I	GGNCC	3 cut(s)	99, 234, 355
SchI	GAGTC	4 cut(s)	99, 136, 170, 659
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	9 cut(s)	59, 119, 138, 220, 231, 252, 316, 384, 558
SfaNI	GCATC	2 cut(s)	317, 418
SinI	GGWCC	1 cut(s)	355
SmiMI	CAYNNNNRTG	2 cut(s)	597, 611
Sse9I	AATT	5 cut(s)	162, 205, 289, 452, 511
SsiI	CCGC	2 cut(s)	42, 611
SspMI	CTAG	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	472
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	3 cut(s)	13, 36, 421
TasI	AATT	5 cut(s)	162, 205, 289, 452, 511
TatI	WGTACW	1 cut(s)	569
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	295, 494
Tru1I	TTAA	2 cut(s)	204, 431
Tru9I	TTAA	2 cut(s)	204, 431
TscAI	CASTG	1 cut(s)	663
TseI	GCWGC	1 cut(s)	247
TspDTI	ATGAA	3 cut(s)	509, 595, 647
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	663
Van91I	CCANNNNNTGG	1 cut(s)	454
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	653
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	1 cut(s)	29
ZraI	GACGTC	1 cut(s)	57
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.