Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004534

Physical Location & Seq

Genomic Coordinates Reverse (-)

47734327 .. 47738042

Gene Structure 3716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0361500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTCTATGGTTGTTGCACTAAAATCGAACTTTCTTCTATTCCAAAATTGGAATGCAGATAATCATAGTGTGCATGTCTTGACACGGTCTAGATCAAAGGCTGAGTTAATTGTTCCGGTCGGGAACTTTCCAGGAATCATAATTGCAGAGGAGCCAGAGTGGAAAGATAGCATTCGAGGTTCAATTGGTGTTGTAAATTTGGCTGGAATGCCCATTAGTACAAGATGGACTTCTGTGGTTTACTACCTTTACCTTTCTTTTGGTTATCCTACCTGTCTTTTTACATATGGTAGGCCTCATGTGAGCTGTACCCGTCCCAAGCCTCCCAGAAAGGTCCCCAAGTCACCTCATAAGTATAATCTCCCAGCAATGTTGTTTCACAACATAGACATGGTCAATTATCATGTGCAGTTTAGTGATATATCAAGAGATAATGCATTAAAAAAAAGGTTGGAAGTAGTTCTTTTGTTCATAGTGTACCTTGCTTATGGATATGATGATGGCAGTGCTCTATCATACATTCTAGCTTCTTACAATGACCAGTTGGTTCATGACACTTTCTTGGCTTTTTGCTCCCTATTTGTTCAACCCATGCCCATCTGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

202

Amino Acids

23.05

Weight (kDa)

8.93

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004534)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31500 FvH4_3g32320 FvH4_4g00690 FvH4_4g27850 FvH4_7g10870 FvH4_7g10870 FvH4_7g10870
malus_domestica	MD16G1010500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113071 RchiOBHm_Chr7g0220371
rosa_laevigata	RLG00000001298 RLG00000002502 RLG00000028412 RLG00000031890
rosa_multiflora	Rmu_ssc0000390.1_g000001
rosa_roxburghii	Rroxscaffold_153G00436800 Rroxscaffold_153G00436810 Rroxscaffold_1G00031690 Rroxscaffold_2G00104890 Rroxscaffold_2G00148900
rosa_rugosa	Rorug03G0199500 Rorug03G0364300.1 Rorug04G0059300 Rorug05G0361500 Rorug06G0155900
rosa_samantha	Rh1BG179800 Rh2DG595900 Rh3BG075300 Rh4DG164000 Rh6AG040200 Rh7AG433700 Rh7BG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	196
AfaI	GTAC	3 cut(s)	220, 310, 479
AgsI	TTSAA	2 cut(s)	183, 587
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	2 cut(s)	306, 527
AluI	AGCT	2 cut(s)	306, 527
Alw21I	GWGCWC	1 cut(s)	511
AoxI	GGCC	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	196
Asp700I	GAANNNNTTC	1 cut(s)	459
AspS9I	GGNCC	1 cut(s)	334
AsuHPI	GGTGA	1 cut(s)	336
AvaII	GGWCC	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	511
BccI	CCATC	3 cut(s)	219, 494, 605
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BciT130I	CCWGG	1 cut(s)	132
BfaI	CTAG	2 cut(s)	90, 524
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	334
BmiI	GGNNCC	2 cut(s)	153, 336
BmrFI	CCNGG	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bse1I	ACTGG	1 cut(s)	541
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	132
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	541
BseRI	GAGGAG	1 cut(s)	164
BseYI	CCCAGC	1 cut(s)	364
BsgI	GTGCAG	1 cut(s)	428
Bsh1285I	CGRYCG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	295
BsiEI	CGRYCG	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	511
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	2 cut(s)	300, 320
BsmFI	GGGAC	2 cut(s)	300, 320
BsmI	GAATGC	3 cut(s)	58, 171, 213
BsnI	GGCC	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp143I	GATC	1 cut(s)	92
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	2 cut(s)	153, 336
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	541
BssMI	GATC	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	102
BstKTI	GATC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	92
BstMCI	CGRYCG	1 cut(s)	120
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	295
BtsI	GCAGTG	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	511
CciI	TCATGA	1 cut(s)	550
Cfr13I	GGNCC	1 cut(s)	334
Csp6I	GTAC	3 cut(s)	219, 309, 478
CviAII	CATG	6 cut(s)	74, 299, 391, 404, 551, 592
CviJI	RGCY	8 cut(s)	101, 154, 203, 295, 306, 322, 527, 566
CviKI_1	RGCY	8 cut(s)	101, 154, 203, 295, 306, 322, 527, 566
CviQI	GTAC	3 cut(s)	219, 309, 478
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	1 cut(s)	94
DpnII	GATC	1 cut(s)	92
Eco147I	AGGCCT	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	439
FaeI	CATG	6 cut(s)	77, 302, 394, 407, 554, 595
FalI	AAGNNNNNCTT	4 cut(s)	214, 246, 447, 479
FaqI	GGGAC	2 cut(s)	300, 320
FatI	CATG	6 cut(s)	73, 298, 390, 403, 550, 591
FauNDI	CATATG	1 cut(s)	286
FspBI	CTAG	2 cut(s)	90, 524
GsaI	CCCAGC	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	295
HapII	CCGG	1 cut(s)	116
Hin1II	CATG	6 cut(s)	77, 302, 394, 407, 554, 595
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	1 cut(s)	336
Hpy166II	GTNNAC	2 cut(s)	241, 478
Hpy188III	TCNNGA	5 cut(s)	79, 90, 121, 426, 551
Hpy8I	GTNNAC	2 cut(s)	241, 478
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4V	TGCA	6 cut(s)	17, 56, 73, 146, 409, 437
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	6 cut(s)	77, 302, 394, 407, 554, 595
Kzo9I	GATC	1 cut(s)	92
LmnI	GCTCC	2 cut(s)	151, 578
MaeI	CTAG	2 cut(s)	90, 524
MaeIII	GTNAC	1 cut(s)	342
MalI	GATC	1 cut(s)	94
MboI	GATC	1 cut(s)	92
MboII	GAAGA	1 cut(s)	26
MfeI	CAATTG	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	6 cut(s)	46, 108, 141, 183, 196, 397
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	5 cut(s)	142, 170, 306, 333, 357
Mph1103I	ATGCAT	1 cut(s)	439
MroXI	GAANNNNTTC	1 cut(s)	459
MseI	TTAA	2 cut(s)	107, 440
MslI	CAYNNNNRTG	1 cut(s)	389
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	183
Mva1269I	GAATGC	3 cut(s)	58, 171, 213
MvaI	CCWGG	1 cut(s)	132
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	1 cut(s)	92
NlaIII	CATG	6 cut(s)	77, 302, 394, 407, 554, 595
NlaIV	GGNNCC	2 cut(s)	153, 336
NmuCI	GTSAC	1 cut(s)	342
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	1 cut(s)	77
PagI	TCATGA	1 cut(s)	550
PceI	AGGCCT	1 cut(s)	295
PctI	GAATGC	3 cut(s)	58, 171, 213
PdmI	GAANNNNTTC	1 cut(s)	459
PfeI	GAWTC	1 cut(s)	135
PflFI	GACNNNGTC	2 cut(s)	85, 392
PfoI	TCCNGGA	1 cut(s)	130
PpuMI	RGGWCCY	1 cut(s)	334
Psp5II	RGGWCCY	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	153, 336
PspPI	GGNCC	1 cut(s)	334
PspPPI	RGGWCCY	1 cut(s)	334
PsyI	GACNNNGTC	2 cut(s)	85, 392
RsaI	GTAC	3 cut(s)	220, 310, 479
RsaNI	GTAC	3 cut(s)	219, 309, 478
RseI	CAYNNNNRTG	1 cut(s)	389
SaqAI	TTAA	2 cut(s)	107, 440
Sau3AI	GATC	1 cut(s)	92
Sau96I	GGNCC	1 cut(s)	334
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	511
SinI	GGWCC	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	389
Sse9I	AATT	6 cut(s)	46, 108, 141, 183, 196, 397
SseBI	AGGCCT	1 cut(s)	295
SspMI	CTAG	2 cut(s)	90, 524
StuI	AGGCCT	1 cut(s)	295
StyD4I	CCNGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	87
TaqI	TCGA	2 cut(s)	26, 175
TasI	AATT	6 cut(s)	46, 108, 141, 183, 196, 397
TatI	WGTACW	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	2 cut(s)	107, 440
Tru9I	TTAA	2 cut(s)	107, 440
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	342
Tsp45I	GTSAC	1 cut(s)	342
TspDTI	ATGAA	2 cut(s)	460, 539
TspRI	CASTG	1 cut(s)	511
Tth111I	GACNNNGTC	2 cut(s)	85, 392
VpaK11BI	GGWCC	1 cut(s)	334
XapI	RAATTY	1 cut(s)	196
XbaI	TCTAGA	1 cut(s)	89
XceI	RCATGY	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	459
XspI	CTAG	2 cut(s)	90, 524
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.