Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004534

Physical Location & Seq

Genomic Coordinates Forward (+)

13697539 .. 13700179

Gene Structure 2641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001298

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGAGTCAATCACGGGCTTTGGTCCATCTCTCGCTCTTCTTCCTGCCTTCTGCCATGGGGTGGTTTCCGGGGTTTTTGGCCGATCGAGGGTTGGAGTCTCAGGGACGAAGGTTCTGAGTTCTGGCCTGGAAGGAGTGCAAGGCCAATCATGGTCTTCGGCGGTCGTTCACGGTGGTGTTTTGGCTCATGGTTGTTTCGATGGTGGGTTGGGGATCAGGGATCGTGCTGGTGGTGGTGGTGGACTAGCCATCAGGAATCACGATGGCGGATCTACAGAAGCCGCTGATCTGCATAGTATTTCAGTGACGCTGGTTTTGGTTTTCAACTCAAAGTCTCTATCTTTGTTTCTCCTACTGTGCTTTGGCTTTGAAGGGAAGGAAGTGCAGGTTGCAAACCAAATTGGGAGTAATTTTCTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

14.17

Weight (kDa)

6.49

Isoelectric Point (pI)

27.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004534)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31500 FvH4_3g32320 FvH4_4g00690 FvH4_4g27850 FvH4_7g10870 FvH4_7g10870 FvH4_7g10870
malus_domestica	MD16G1010500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113071 RchiOBHm_Chr7g0220371
rosa_laevigata	RLG00000001298 RLG00000002502 RLG00000028412 RLG00000031890
rosa_multiflora	Rmu_ssc0000390.1_g000001
rosa_roxburghii	Rroxscaffold_153G00436800 Rroxscaffold_153G00436810 Rroxscaffold_1G00031690 Rroxscaffold_2G00104890 Rroxscaffold_2G00148900
rosa_rugosa	Rorug03G0199500 Rorug03G0364300.1 Rorug04G0059300 Rorug05G0361500 Rorug06G0155900
rosa_samantha	Rh1BG179800 Rh2DG595900 Rh3BG075300 Rh4DG164000 Rh6AG040200 Rh7AG433700 Rh7BG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
AccB7I	CCANNNNNTGG	1 cut(s)	61
AciI	CCGC	3 cut(s)	161, 267, 282
AclWI	GGATC	3 cut(s)	221, 228, 277
AcoI	YGGCCR	1 cut(s)	79
AfiI	CCNNNNNNNGG	2 cut(s)	61, 88
AgsI	TTSAA	2 cut(s)	325, 371
AjnI	CCWGG	1 cut(s)	126
AleI	CACNNNNGTG	1 cut(s)	174
Alw26I	GTCTC	2 cut(s)	103, 339
AlwI	GGATC	3 cut(s)	221, 228, 277
AoxI	GGCC	3 cut(s)	79, 124, 142
ArsI	GACNNNNNNTTYG	2 cut(s)	298, 330
AspS9I	GGNCC	1 cut(s)	23
AsuC2I	CCSGG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	147
BccI	CCATC	4 cut(s)	34, 194, 257, 257
BciT130I	CCWGG	1 cut(s)	128
BcnI	CCSGG	1 cut(s)	70
BcoDI	GTCTC	2 cut(s)	103, 339
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	376
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme1390I	CCNGG	2 cut(s)	70, 128
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	23
BmrFI	CCNGG	2 cut(s)	70, 128
BpiI	GAAGAC	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	70
BsaJI	CCNNGG	2 cut(s)	55, 69
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 88
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	55, 69
BseLI	CCNNNNNNNGG	2 cut(s)	61, 88
BseMII	CTCAG	2 cut(s)	107, 114
BsgI	GTGCAG	1 cut(s)	404
Bsh1285I	CGRYCG	2 cut(s)	86, 165
BshFI	GGCC	3 cut(s)	81, 126, 144
BsiEI	CGRYCG	2 cut(s)	86, 165
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	2 cut(s)	61, 88
BsmAI	GTCTC	2 cut(s)	103, 339
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	3 cut(s)	81, 126, 144
Bsp143I	GATC	5 cut(s)	83, 213, 220, 269, 286
Bsp19I	CCATGG	1 cut(s)	55
BspACI	CCGC	3 cut(s)	161, 267, 282
BspANI	GGCC	3 cut(s)	81, 126, 144
BspCNI	CTCAG	2 cut(s)	108, 113
BspMI	ACCTGC	1 cut(s)	376
BspPI	GGATC	3 cut(s)	221, 228, 277
BspQI	GCTCTTC	1 cut(s)	42
BssECI	CCNNGG	2 cut(s)	55, 69
BssMI	GATC	5 cut(s)	83, 213, 220, 269, 286
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	173, 357
Bst6I	CTCTTC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	100, 116
BstDSI	CCRYGG	1 cut(s)	55
BstKTI	GATC	5 cut(s)	86, 216, 223, 272, 289
BstMAI	GTCTC	2 cut(s)	103, 339
BstMBI	GATC	5 cut(s)	83, 213, 220, 269, 286
BstMCI	CGRYCG	2 cut(s)	86, 165
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	2 cut(s)	68, 126
BstSFI	CTRYAG	1 cut(s)	273
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
BsuRI	GGCC	3 cut(s)	81, 126, 144
BtgI	CCRYGG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	309
BveI	ACCTGC	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	23
CseI	GACGC	1 cut(s)	316
CviAII	CATG	3 cut(s)	56, 150, 188
CviJI	RGCY	8 cut(s)	18, 81, 126, 144, 185, 248, 281, 366
CviKI_1	RGCY	8 cut(s)	18, 81, 126, 144, 185, 248, 281, 366
DdeI	CTNAG	2 cut(s)	100, 116
DpnI	GATC	5 cut(s)	85, 215, 222, 271, 288
DpnII	GATC	5 cut(s)	83, 213, 220, 269, 286
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
EciI	GGCGGA	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	3 cut(s)	59, 153, 191
FaiI	YATR	4 cut(s)	57, 151, 189, 294
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	3 cut(s)	55, 149, 187
Fnu4HI	GCNGC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	1 cut(s)	282
HaeIII	GGCC	3 cut(s)	81, 126, 144
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	1 cut(s)	316
Hin1II	CATG	3 cut(s)	59, 153, 191
HinfI	GANTC	3 cut(s)	5, 96, 256
HpaII	CCGG	1 cut(s)	69
Hpy166II	GTNNAC	2 cut(s)	169, 242
Hpy188I	TCNGA	2 cut(s)	117, 422
Hpy188III	TCNNGA	2 cut(s)	253, 260
Hpy8I	GTNNAC	2 cut(s)	169, 242
HpyAV	CCTTC	5 cut(s)	58, 103, 125, 365, 370
HpyCH4III	ACNGT	2 cut(s)	173, 357
HpyCH4V	TGCA	4 cut(s)	139, 292, 385, 392
HpyF3I	CTNAG	2 cut(s)	100, 116
Hsp92II	CATG	3 cut(s)	59, 153, 191
Kzo9I	GATC	5 cut(s)	83, 213, 220, 269, 286
LguI	GCTCTTC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	5 cut(s)	85, 215, 222, 271, 288
MboI	GATC	5 cut(s)	83, 213, 220, 269, 286
MboII	GAAGA	3 cut(s)	29, 32, 147
MflI	RGATCY	1 cut(s)	269
MluCI	AATT	2 cut(s)	399, 409
MlyI	GAGTC	2 cut(s)	14, 105
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	2 cut(s)	70, 128
MvaI	CCWGG	1 cut(s)	128
NciI	CCSGG	1 cut(s)	70
NcoI	CCATGG	1 cut(s)	55
NdeII	GATC	5 cut(s)	83, 213, 220, 269, 286
NlaIII	CATG	3 cut(s)	59, 153, 191
NmuCI	GTSAC	1 cut(s)	304
OliI	CACNNNNGTG	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	256
PflMI	CCANNNNNTGG	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	283
Ple19I	CGATCG	1 cut(s)	86
PleI	GAGTC	2 cut(s)	13, 104
PpsI	GAGTC	2 cut(s)	13, 104
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	269
PvuI	CGATCG	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	174
SapI	GCTCTTC	1 cut(s)	42
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	5 cut(s)	83, 213, 220, 269, 286
Sau96I	GGNCC	1 cut(s)	23
SchI	GAGTC	2 cut(s)	14, 105
ScrFI	CCNGG	2 cut(s)	70, 128
SetI	ASST	2 cut(s)	114, 390
SfcI	CTRYAG	1 cut(s)	273
SinI	GGWCC	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	2 cut(s)	399, 409
SsiI	CCGC	3 cut(s)	161, 267, 282
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	68, 126
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	173, 357
TaqI	TCGA	2 cut(s)	86, 198
TasI	AATT	2 cut(s)	399, 409
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	256
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	304
TspRI	CASTG	1 cut(s)	309
Van91I	CCANNNNNTGG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	23
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.