RLG00000002502

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004534
Physical Location & Seq
Forward (+)
35341876 .. 35342270
395 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002502

Sequence Viewer

Length: 309 bp
ATGGAGTCATTCACGGGCTTTGGTCCGTCTCTCGCTATTCTTCTTGCCTTCTGCTATGGGGCAGTTTGCCGGGATTTTGGCAGACCGAGGGTCGGAGACTTGGGGACGAAGGTTCTGAGTTCTGGCCTTGAAGGAGTGCAAGGCCAATCATGGTCTTCGGCGGTCGTTCACGGTGGTGTTTTGGCTAATGGTGACAACAGCTGGTCTTCAAGCTCGACTGTTGGGGGTTTATGGGATGGAATTGAGCTGGCGATGGTGGTGGACTGGCAATCAGGGATCACGTTGGCGGCTATGCAGAAGGTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

10.57

Weight (kDa)

4.7

Isoelectric Point (pI)

30.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 161, 287
AclWI GGATC 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 2 cut(s) 131, 210
AhdI GACNNNNNGTC 1 cut(s) 89
AleI CACNNNNGTG 1 cut(s) 174
AluBI AGCT 3 cut(s) 201, 213, 247
AluI AGCT 3 cut(s) 201, 213, 247
Alw26I GTCTC 2 cut(s) 33, 90
AlwI GGATC 1 cut(s) 284
AoxI GGCC 2 cut(s) 124, 142
AspS9I GGNCC 1 cut(s) 23
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 1 cut(s) 23
BbsI GAAGAC 2 cut(s) 147, 198
BccI CCATC 2 cut(s) 230, 247
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 2 cut(s) 33, 90
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 23
BmeRI GACNNNNNGTC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 71
BpiI GAAGAC 2 cut(s) 147, 198
BpuMI CCSGG 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 86
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 269
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 2 cut(s) 126, 144
BsiEI CGRYCG 1 cut(s) 165
BsiSI CCGG 1 cut(s) 70
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 2 cut(s) 33, 90
BsmBI CGTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 2 cut(s) 126, 144
Bsp143I GATC 1 cut(s) 276
BspACI CCGC 2 cut(s) 161, 287
BspANI GGCC 2 cut(s) 126, 144
BspCNI CTCAG 1 cut(s) 108
BspPI GGATC 1 cut(s) 284
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 1 cut(s) 276
Bst4CI ACNGT 2 cut(s) 173, 220
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 1 cut(s) 279
BstMAI GTCTC 2 cut(s) 33, 90
BstMBI GATC 1 cut(s) 276
BstMCI CGRYCG 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 69
BstV2I GAAGAC 2 cut(s) 147, 198
BsuRI GGCC 2 cut(s) 126, 144
BtgZI GCGATG 1 cut(s) 266
BtsCI GGATG 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 23
CviAII CATG 1 cut(s) 150
CviJI RGCY 8 cut(s) 18, 126, 144, 185, 201, 213, 247, 290
CviKI_1 RGCY 8 cut(s) 18, 126, 144, 185, 201, 213, 247, 290
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
DriI GACNNNNNGTC 1 cut(s) 89
Eam1105I GACNNNNNGTC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 23
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 1 cut(s) 153
FaiI YATR 5 cut(s) 57, 151, 232, 293, 307
FaqI GGGAC 1 cut(s) 118
FatI CATG 1 cut(s) 149
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 1 cut(s) 288
GluI GCNGC 1 cut(s) 288
HaeIII GGCC 2 cut(s) 126, 144
HapII CCGG 1 cut(s) 70
Hin1II CATG 1 cut(s) 153
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 70
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 2 cut(s) 169, 262
Hpy188I TCNGA 2 cut(s) 95, 117
Hpy8I GTNNAC 2 cut(s) 169, 262
HpyAV CCTTC 4 cut(s) 58, 103, 125, 292
HpyCH4III ACNGT 2 cut(s) 173, 220
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 2 cut(s) 139, 295
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 1 cut(s) 153
Kzo9I GATC 1 cut(s) 276
LpnPI CCDG 6 cut(s) 83, 108, 187, 233, 250, 258
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 191
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MboII GAAGA 3 cut(s) 32, 147, 198
MluCI AATT 1 cut(s) 240
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 1 cut(s) 81
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 1 cut(s) 71
NciI CCSGG 1 cut(s) 71
NdeII GATC 1 cut(s) 276
NlaIII CATG 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 191
OliI CACNNNNGTG 1 cut(s) 174
PkrI GCNGC 1 cut(s) 289
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 23
PvuII CAGCTG 1 cut(s) 201
RseI CAYNNNNRTG 1 cut(s) 174
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 1 cut(s) 276
Sau96I GGNCC 1 cut(s) 23
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 71
SetI ASST 6 cut(s) 114, 203, 215, 249, 284, 303
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 1 cut(s) 240
SsiI CCGC 2 cut(s) 161, 287
StyD4I CCNGG 1 cut(s) 69
TaaI ACNGT 2 cut(s) 173, 220
TaiI ACGT 1 cut(s) 284
TaqI TCGA 1 cut(s) 215
TaqII GACCGA 1 cut(s) 100
TasI AATT 1 cut(s) 240
TauI GCSGC 1 cut(s) 290
TseFI GTSAC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 191
TspGWI ACGGA 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.