RLG00000031890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004534
Physical Location & Seq
Forward (+)
9113412 .. 9115094
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031890

Sequence Viewer

Length: 465 bp
ATGGAGTCAATCACGGGCTTTGGTCCGTCTCTCGCTCTTCTTCCTGCCTTTTGTCATGGGGCGGTTTGCGGGGTTTTTGGCCGATCGAGGGTTGGAGTCTCGGGGGCGAAGGTTCTGAGTTCTGGCCTGGAAGGAGTGCAAGGCCAATCATGGTCTTCGGCGGTCGTTCACGGTGGTGTTTTGGCTGATGGTTGTTTCGATGGTGGGTTGGGGATCAGGGATCGTGCTGGCGGTGGTGGTGGACTGGCCATCAGGAATCACGATGGCGGATCTACAGAAGGTTCCGGATCCGGATCTGGGATCCGGGTGGTTTTGGCACACGAGTCTGGATCTGGGATCCGGTCGCCGCTACCACTCATGAGGCGCGAGGAGTCTCTGGAGACATCTCAACACCAAACGGTGCCGCCGCAGTTGAGGGCCTTCACTGTGGAGCTCGACGTCGGCGCCGACGACTCTGTTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

15.47

Weight (kDa)

5.65

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 441
AccB1I GGYRCC 2 cut(s) 400, 443
AccII CGCG 1 cut(s) 366
AccIII TCCGGA 2 cut(s) 284, 290
AciI CCGC 8 cut(s) 62, 69, 161, 231, 267, 347, 404, 407
AcoI YGGCCR 2 cut(s) 79, 246
AcyI GRCGYC 2 cut(s) 438, 444
AfiI CCNNNNNNNGG 2 cut(s) 88, 297
AjnI CCWGG 1 cut(s) 126
AleI CACNNNNGTG 1 cut(s) 174
AluBI AGCT 1 cut(s) 433
AluI AGCT 1 cut(s) 433
Alw21I GWGCWC 1 cut(s) 435
Alw26I GTCTC 4 cut(s) 33, 103, 374, 378
Ama87I CYCGRG 1 cut(s) 100
Aor13HI TCCGGA 2 cut(s) 284, 290
AoxI GGCC 5 cut(s) 79, 124, 142, 246, 417
AspLEI GCGC 2 cut(s) 366, 446
AspS9I GGNCC 2 cut(s) 23, 417
AsuC2I CCSGG 1 cut(s) 305
AvaI CYCGRG 1 cut(s) 100
AvaII GGWCC 1 cut(s) 23
BalI TGGCCA 1 cut(s) 248
BamHI GGATCC 3 cut(s) 287, 300, 336
BanI GGYRCC 2 cut(s) 400, 443
BanII GRGCYC 1 cut(s) 435
BauI CACGAG 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 435
BccI CCATC 4 cut(s) 182, 194, 257, 257
BciT130I CCWGG 1 cut(s) 128
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 4 cut(s) 33, 103, 374, 378
BfmI CTRYAG 1 cut(s) 273
BfoI RGCGCY 1 cut(s) 447
BisI GCNGC 3 cut(s) 347, 404, 407
BlsI GCNGC 3 cut(s) 348, 405, 408
Bme1390I CCNGG 2 cut(s) 128, 305
Bme18I GGWCC 1 cut(s) 23
BmeT110I CYCGRG 1 cut(s) 100
BmgT120I GGNCC 2 cut(s) 23, 417
BmiI GGNNCC 6 cut(s) 283, 289, 302, 338, 402, 445
BmrFI CCNGG 2 cut(s) 128, 305
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 398
BpuMI CCSGG 1 cut(s) 305
BsaBI GATNNNNATC 1 cut(s) 292
BsaHI GRCGYC 2 cut(s) 438, 444
BsaWI WCCGGW 3 cut(s) 284, 290, 339
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 297
Bse1I ACTGG 1 cut(s) 249
Bse8I GATNNNNATC 1 cut(s) 292
BseAI TCCGGA 2 cut(s) 284, 290
BseBI CCWGG 1 cut(s) 128
BseJI GATNNNNATC 1 cut(s) 292
BseLI CCNNNNNNNGG 2 cut(s) 88, 297
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 249
BseRI GAGGAG 1 cut(s) 383
Bsh1236I CGCG 1 cut(s) 366
Bsh1285I CGRYCG 3 cut(s) 86, 165, 344
BshFI GGCC 5 cut(s) 81, 126, 144, 248, 419
BshNI GGYRCC 2 cut(s) 400, 443
BsiEI CGRYCG 3 cut(s) 86, 165, 344
BsiHKAI GWGCWC 1 cut(s) 435
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 4 cut(s) 285, 291, 304, 340
BslI CCNNNNNNNGG 2 cut(s) 88, 297
BsmAI GTCTC 4 cut(s) 33, 103, 374, 378
BsmBI CGTCTC 1 cut(s) 33
BsnI GGCC 5 cut(s) 81, 126, 144, 248, 419
BsoBI CYCGRG 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 435
Bsp13I TCCGGA 2 cut(s) 284, 290
Bsp143I GATC 9 cut(s) 83, 213, 220, 269, 287, 293, 300, 329, 336
BspACI CCGC 8 cut(s) 62, 69, 161, 231, 267, 347, 404, 407
BspANI GGCC 5 cut(s) 81, 126, 144, 248, 419
BspCNI CTCAG 1 cut(s) 108
BspEI TCCGGA 2 cut(s) 284, 290
BspFNI CGCG 1 cut(s) 366
BspHI TCATGA 1 cut(s) 357
BspLI GGNNCC 6 cut(s) 283, 289, 302, 338, 402, 445
BspQI GCTCTTC 1 cut(s) 42
BspT107I GGYRCC 2 cut(s) 400, 443
BsrI ACTGG 1 cut(s) 249
BssMI GATC 9 cut(s) 83, 213, 220, 269, 287, 293, 300, 329, 336
BssNI GRCGYC 2 cut(s) 438, 444
BssSI CACGAG 1 cut(s) 320
Bst2BI CACGAG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 3 cut(s) 173, 400, 427
Bst6I CTCTTC 1 cut(s) 42
BstACI GRCGYC 2 cut(s) 438, 444
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 116
BstFNI CGCG 1 cut(s) 366
BstH2I RGCGCY 1 cut(s) 447
BstHHI GCGC 2 cut(s) 366, 446
BstKTI GATC 9 cut(s) 86, 216, 223, 272, 290, 296, 303, 332, 339
BstMAI GTCTC 4 cut(s) 33, 103, 374, 378
BstMBI GATC 9 cut(s) 83, 213, 220, 269, 287, 293, 300, 329, 336
BstMCI CGRYCG 3 cut(s) 86, 165, 344
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 126, 303
BstSFI CTRYAG 1 cut(s) 273
BstUI CGCG 1 cut(s) 366
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 6 cut(s) 269, 287, 293, 300, 329, 336
BstYI RGATCY 6 cut(s) 269, 287, 293, 300, 329, 336
BsuRI GGCC 5 cut(s) 81, 126, 144, 248, 419
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 1 cut(s) 229
CciI TCATGA 1 cut(s) 357
CfoI GCGC 2 cut(s) 366, 446
Cfr13I GGNCC 2 cut(s) 23, 417
CviAII CATG 3 cut(s) 56, 150, 358
CviJI RGCY 8 cut(s) 18, 81, 126, 144, 185, 248, 419, 433
CviKI_1 RGCY 8 cut(s) 18, 81, 126, 144, 185, 248, 419, 433
DdeI CTNAG 1 cut(s) 116
DinI GGCGCC 1 cut(s) 445
DpnI GATC 9 cut(s) 85, 215, 222, 271, 289, 295, 302, 331, 338
DpnII GATC 9 cut(s) 83, 213, 220, 269, 287, 293, 300, 329, 336
EaeI YGGCCR 2 cut(s) 79, 246
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
EciI GGCGGA 1 cut(s) 282
Ecl136II GAGCTC 1 cut(s) 433
Eco24I GRGCYC 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 433
Eco88I CYCGRG 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 433
EcoO109I RGGNCCY 1 cut(s) 417
EcoRII CCWGG 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 435
EgeI GGCGCC 1 cut(s) 445
EheI GGCGCC 1 cut(s) 445
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 3 cut(s) 59, 153, 361
FaiI YATR 3 cut(s) 57, 151, 359
FatI CATG 3 cut(s) 55, 149, 357
FauI CCCGC 1 cut(s) 62
Fnu4HI GCNGC 3 cut(s) 347, 404, 407
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 3 cut(s) 347, 404, 407
GlaI GCGC 2 cut(s) 365, 445
GluI GCNGC 3 cut(s) 347, 404, 407
GsuI CTGGAG 1 cut(s) 398
HaeII RGCGCY 1 cut(s) 447
HaeIII GGCC 5 cut(s) 81, 126, 144, 248, 419
HapII CCGG 4 cut(s) 285, 291, 304, 340
HhaI GCGC 2 cut(s) 366, 446
Hin1I GRCGYC 2 cut(s) 438, 444
Hin1II CATG 3 cut(s) 59, 153, 361
Hin6I GCGC 2 cut(s) 364, 444
HinP1I GCGC 2 cut(s) 364, 444
HinfI GANTC 6 cut(s) 5, 96, 256, 323, 371, 452
HpaII CCGG 4 cut(s) 285, 291, 304, 340
Hpy166II GTNNAC 2 cut(s) 169, 242
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 7 cut(s) 253, 260, 285, 291, 327, 358, 377
Hpy8I GTNNAC 2 cut(s) 169, 242
Hpy99I CGWCG 3 cut(s) 440, 443, 452
HpyAV CCTTC 4 cut(s) 103, 125, 272, 430
HpyCH4III ACNGT 3 cut(s) 173, 400, 427
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 1 cut(s) 139
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 438
Hsp92I GRCGYC 2 cut(s) 438, 444
Hsp92II CATG 3 cut(s) 59, 153, 361
HspAI GCGC 2 cut(s) 364, 444
KasI GGCGCC 1 cut(s) 443
Kpn2I TCCGGA 2 cut(s) 284, 290
Kzo9I GATC 9 cut(s) 83, 213, 220, 269, 287, 293, 300, 329, 336
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 430
MaeII ACGT 1 cut(s) 438
MalI GATC 9 cut(s) 85, 215, 222, 271, 289, 295, 302, 331, 338
MboI GATC 9 cut(s) 83, 213, 220, 269, 287, 293, 300, 329, 336
MboII GAAGA 3 cut(s) 29, 32, 147
MflI RGATCY 6 cut(s) 269, 287, 293, 300, 329, 336
MhlI GDGCHC 1 cut(s) 435
MlsI TGGCCA 1 cut(s) 248
MluNI TGGCCA 1 cut(s) 248
Mly113I GGCGCC 1 cut(s) 444
MlyI GAGTC 5 cut(s) 14, 105, 332, 380, 446
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 4 cut(s) 81, 354, 361, 408
Mox20I TGGCCA 1 cut(s) 248
MroI TCCGGA 2 cut(s) 284, 290
MscI TGGCCA 1 cut(s) 248
MslI CAYNNNNRTG 1 cut(s) 174
Msp20I TGGCCA 1 cut(s) 248
MspI CCGG 4 cut(s) 285, 291, 304, 340
MspR9I CCNGG 2 cut(s) 128, 305
MvaI CCWGG 1 cut(s) 128
MvnI CGCG 1 cut(s) 366
NarI GGCGCC 1 cut(s) 444
NciI CCSGG 1 cut(s) 305
NdeII GATC 9 cut(s) 83, 213, 220, 269, 287, 293, 300, 329, 336
NlaIII CATG 3 cut(s) 59, 153, 361
NlaIV GGNNCC 6 cut(s) 283, 289, 302, 338, 402, 445
OliI CACNNNNGTG 1 cut(s) 174
PagI TCATGA 1 cut(s) 357
PciSI GCTCTTC 1 cut(s) 42
PcsI WCGNNNNNNNCGW 2 cut(s) 444, 447
PfeI GAWTC 1 cut(s) 256
PkrI GCNGC 3 cut(s) 348, 405, 408
Ple19I CGATCG 1 cut(s) 86
PleI GAGTC 5 cut(s) 13, 104, 331, 379, 446
PluTI GGCGCC 1 cut(s) 447
PpsI GAGTC 5 cut(s) 13, 104, 331, 379, 446
Psp124BI GAGCTC 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 6 cut(s) 283, 289, 302, 338, 402, 445
PspPI GGNCC 2 cut(s) 23, 417
PsuI RGATCY 6 cut(s) 269, 287, 293, 300, 329, 336
PvuI CGATCG 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 174
SacI GAGCTC 1 cut(s) 435
SapI GCTCTTC 1 cut(s) 42
SatI GCNGC 3 cut(s) 347, 404, 407
Sau3AI GATC 9 cut(s) 83, 213, 220, 269, 287, 293, 300, 329, 336
Sau96I GGNCC 2 cut(s) 23, 417
SchI GAGTC 5 cut(s) 14, 105, 332, 380, 446
ScrFI CCNGG 2 cut(s) 128, 305
SduI GDGCHC 1 cut(s) 435
SetI ASST 4 cut(s) 114, 283, 435, 441
SfcI CTRYAG 1 cut(s) 273
SfoI GGCGCC 1 cut(s) 445
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 174
SsiI CCGC 8 cut(s) 62, 69, 161, 231, 267, 347, 404, 407
SspDI GGCGCC 1 cut(s) 443
SstI GAGCTC 1 cut(s) 435
StyD4I CCNGG 2 cut(s) 126, 303
TaaI ACNGT 3 cut(s) 173, 400, 427
TaiI ACGT 1 cut(s) 441
TaqI TCGA 3 cut(s) 86, 198, 435
TauI GCSGC 3 cut(s) 349, 406, 409
TfiI GAWTC 1 cut(s) 256
TscAI CASTG 1 cut(s) 430
TspGWI ACGGA 1 cut(s) 15
TspRI CASTG 1 cut(s) 430
VpaK11BI GGWCC 1 cut(s) 23
ZraI GACGTC 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.