Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004534

Physical Location & Seq

Genomic Coordinates Forward (+)

10194131 .. 10205568

Gene Structure 11438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCACCTGAAAACCGGGTATCTTCAAGAATGAAATTTTTCAAAGAACATAGTTTTGGAAATGAACATGTTGATCCAGTAGAAGTTGACAGTATATTGGTTTCTGAGAATGTATCACCTAAGCATGCAAACATAAAAGATGTGGTTCCTAGGAGAAAAAGTTCTACAAGGAAGAGAAGCTCTTCATATTTGGAATCTGTTGAAGGTGAAGGAACATCTATGGATATGCAAAGGTTTAATGATGAGGCTATTGGTGTTAGTCAAGTTTCTGAAGATTCAGAGTGGTCATTTGCTATTGATAATGATCCGATAGATATACAACTTGGAAGACGGATATCTTCGAGAAGAAATTTTTTCCAGAATCTGATTAACGAAAAAACATCAGCTGTTTCTGAAGCTTTTCAAAATGAAGGTGGAGATAAATTGGAACAATTGGATGGGGGAATGAACAACTTTGGAAGAAATGCTAATCAAAGTATGTTCAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

164

Amino Acids

18.41

Weight (kDa)

5.29

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004534)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31500 FvH4_3g32320 FvH4_4g00690 FvH4_4g27850 FvH4_7g10870 FvH4_7g10870 FvH4_7g10870
malus_domestica	MD16G1010500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113071 RchiOBHm_Chr7g0220371
rosa_laevigata	RLG00000001298 RLG00000002502 RLG00000028412 RLG00000031890
rosa_multiflora	Rmu_ssc0000390.1_g000001
rosa_roxburghii	Rroxscaffold_153G00436800 Rroxscaffold_153G00436810 Rroxscaffold_1G00031690 Rroxscaffold_2G00104890 Rroxscaffold_2G00148900
rosa_rugosa	Rorug03G0199500 Rorug03G0364300.1 Rorug04G0059300 Rorug05G0361500 Rorug06G0155900
rosa_samantha	Rh1BG179800 Rh2DG595900 Rh3BG075300 Rh4DG164000 Rh6AG040200 Rh7AG433700 Rh7BG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AclWI	GGATC	2 cut(s)	68, 299
AcsI	RAATTY	2 cut(s)	35, 349
AcuI	CTGAAG	2 cut(s)	291, 414
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	5 cut(s)	27, 43, 203, 404, 484
AjuI	GAANNNNNNNTTGG	2 cut(s)	39, 71
AloI	GAACNNNNNNTCC	2 cut(s)	145, 177
AluBI	AGCT	3 cut(s)	180, 386, 398
AluI	AGCT	3 cut(s)	180, 386, 398
AlwI	GGATC	2 cut(s)	68, 299
AlwNI	CAGNNNCTG	1 cut(s)	364
ApoI	RAATTY	2 cut(s)	35, 349
Asp700I	GAANNNNTTC	4 cut(s)	38, 160, 181, 399
AspA2I	CCTAGG	1 cut(s)	149
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	2 cut(s)	108, 218
AvrII	CCTAGG	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	334
BccI	CCATC	1 cut(s)	431
BcnI	CCSGG	1 cut(s)	17
BfaI	CTAG	1 cut(s)	150
BlnI	CCTAGG	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	17
BmiI	GGNNCC	2 cut(s)	6, 147
BmrFI	CCNGG	1 cut(s)	17
BpiI	GAAGAC	1 cut(s)	334
Bpu10I	CCTNAGC	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	17
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bse1I	ACTGG	1 cut(s)	77
Bse8I	GATNNNNATC	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	442
BseJI	GATNNNNATC	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	16
Bsp143I	GATC	2 cut(s)	73, 304
BspCNI	CTCAG	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	6, 147
BspPI	GGATC	2 cut(s)	68, 299
BspQI	GCTCTTC	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	2 cut(s)	73, 304
BssT1I	CCWWGG	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	2 cut(s)	167, 187
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	105, 120
BstF5I	GGATG	1 cut(s)	442
BstKTI	GATC	2 cut(s)	76, 307
BstMBI	GATC	2 cut(s)	73, 304
BstNSI	RCATGY	2 cut(s)	71, 128
BstSCI	CCNGG	1 cut(s)	15
BstV2I	GAAGAC	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	442
Cac8I	GCNNGC	1 cut(s)	126
CaiI	CAGNNNCTG	1 cut(s)	364
CviAII	CATG	2 cut(s)	68, 125
CviJI	RGCY	4 cut(s)	180, 248, 386, 398
CviKI_1	RGCY	4 cut(s)	180, 248, 386, 398
DdeI	CTNAG	2 cut(s)	105, 120
DpnI	GATC	2 cut(s)	75, 306
DpnII	GATC	2 cut(s)	73, 304
Eam1104I	CTCTTC	2 cut(s)	167, 187
EarI	CTCTTC	2 cut(s)	167, 187
Eco130I	CCWWGG	1 cut(s)	149
Eco32I	GATATC	1 cut(s)	336
Eco57I	CTGAAG	2 cut(s)	291, 414
EcoRV	GATATC	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	2 cut(s)	71, 128
FatI	CATG	2 cut(s)	67, 124
FokI	GGATG	1 cut(s)	449
FspBI	CTAG	1 cut(s)	150
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	2 cut(s)	71, 128
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	396
HinfI	GANTC	3 cut(s)	194, 275, 361
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	2 cut(s)	108, 218
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	6 cut(s)	106, 271, 280, 309, 366, 394
Hpy188III	TCNNGA	4 cut(s)	27, 342, 358, 484
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	3 cut(s)	197, 203, 404
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	2 cut(s)	128, 229
HpyF3I	CTNAG	2 cut(s)	105, 120
Hsp92II	CATG	2 cut(s)	71, 128
Kzo9I	GATC	2 cut(s)	73, 304
LguI	GCTCTTC	1 cut(s)	187
LpnPI	CCDG	4 cut(s)	21, 29, 90, 371
MaeI	CTAG	1 cut(s)	150
MalI	GATC	2 cut(s)	75, 306
MboI	GATC	2 cut(s)	73, 304
MboII	GAAGA	8 cut(s)	15, 174, 184, 284, 330, 339, 357, 471
MfeI	CAATTG	1 cut(s)	431
MluCI	AATT	4 cut(s)	35, 349, 422, 431
MnlI	CCTC	1 cut(s)	238
MroXI	GAANNNNTTC	4 cut(s)	38, 160, 181, 399
MseI	TTAA	2 cut(s)	237, 369
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	431
NciI	CCSGG	1 cut(s)	17
NdeII	GATC	2 cut(s)	73, 304
NlaIII	CATG	2 cut(s)	71, 128
NlaIV	GGNNCC	2 cut(s)	6, 147
NspI	RCATGY	2 cut(s)	71, 128
PaeI	GCATGC	1 cut(s)	128
PciI	ACATGT	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	187
PdmI	GAANNNNTTC	4 cut(s)	38, 160, 181, 399
PfeI	GAWTC	3 cut(s)	194, 275, 361
PscI	ACATGT	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	6, 147
PstNI	CAGNNNCTG	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	187
SaqAI	TTAA	2 cut(s)	237, 369
Sau3AI	GATC	2 cut(s)	73, 304
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	8 cut(s)	10, 121, 182, 208, 236, 388, 400, 415
SphI	GCATGC	1 cut(s)	128
Sse9I	AATT	4 cut(s)	35, 349, 422, 431
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	92
TaqI	TCGA	1 cut(s)	341
TasI	AATT	4 cut(s)	35, 349, 422, 431
TfiI	GAWTC	3 cut(s)	194, 275, 361
Tru1I	TTAA	2 cut(s)	237, 369
Tru9I	TTAA	2 cut(s)	237, 369
TspDTI	ATGAA	5 cut(s)	47, 78, 174, 423, 461
TspGWI	ACGGA	1 cut(s)	346
XapI	RAATTY	2 cut(s)	35, 349
XceI	RCATGY	2 cut(s)	71, 128
XmaJI	CCTAGG	1 cut(s)	149
XmnI	GAANNNNTTC	4 cut(s)	38, 160, 181, 399
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.