Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004534

Physical Location & Seq

Genomic Coordinates Forward (+)

599553 .. 601059

Gene Structure 1507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTTGCCAGATCGATGGCGACGACGCCTAGATCTCGACGCCGCTGGATCGTCGACGTCGTATCGGTTCCGTCGTCTCTCATACATCAACAACGCTGGGCCCAGACTCATCATTAGCTATGGTCGGAGTCGGGAGCTCCTCATCTATCTCTTCTCTGCTTCAATTTCTTCGCCAGACTCCTCCTCATTATCTCCTCCCATTTTTAAAGTTCTTTGCCTTATAATTGTGGTAGTAGCTTTCGAAAATCATGTGAATTTGGATATTGAAGCCTCTCTTAACCAAGAGATCATTCTACTAACCAAGAAATATGTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

11.97

Weight (kDa)

9.72

Isoelectric Point (pI)

61.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004534)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31500 FvH4_3g32320 FvH4_4g00690 FvH4_4g27850 FvH4_7g10870 FvH4_7g10870 FvH4_7g10870
malus_domestica	MD16G1010500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113071 RchiOBHm_Chr7g0220371
rosa_laevigata	RLG00000001298 RLG00000002502 RLG00000028412 RLG00000031890
rosa_multiflora	Rmu_ssc0000390.1_g000001
rosa_roxburghii	Rroxscaffold_153G00436800 Rroxscaffold_153G00436810 Rroxscaffold_1G00031690 Rroxscaffold_2G00104890 Rroxscaffold_2G00148900
rosa_rugosa	Rorug03G0199500 Rorug03G0364300.1 Rorug04G0059300 Rorug05G0361500 Rorug06G0155900
rosa_samantha	Rh1BG179800 Rh2DG595900 Rh3BG075300 Rh4DG164000 Rh6AG040200 Rh7AG433700 Rh7BG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AatII	GACGTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	53
AciI	CCGC	1 cut(s)	42
AclWI	GGATC	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	253
AcyI	GRCGYC	3 cut(s)	25, 39, 56
AgsI	TTSAA	2 cut(s)	162, 266
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AluBI	AGCT	3 cut(s)	117, 136, 236
AluI	AGCT	3 cut(s)	117, 136, 236
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	55
AoxI	GGCC	1 cut(s)	98
ApaI	GGGCCC	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	253
AspS9I	GGNCC	2 cut(s)	98, 99
AsuII	TTCGAA	1 cut(s)	240
BaeGI	GKGCMC	1 cut(s)	102
BanII	GRGCYC	2 cut(s)	102, 138
Bbv12I	GWGCWC	1 cut(s)	138
BccI	CCATC	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	29
BglII	AGATCT	1 cut(s)	31
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	98, 99
BmiI	GGNNCC	2 cut(s)	68, 100
Bpu14I	TTCGAA	1 cut(s)	240
Bsa29I	ATCGAT	1 cut(s)	13
BsaHI	GRCGYC	3 cut(s)	25, 39, 56
BseCI	ATCGAT	1 cut(s)	13
BseRI	GAGGAG	4 cut(s)	128, 169, 172, 183
BseSI	GKGCMC	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	95
BshFI	GGCC	1 cut(s)	100
BshVI	ATCGAT	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	80
BsmBI	CGTCTC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	100
Bsp119I	TTCGAA	1 cut(s)	240
Bsp120I	GGGCCC	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	102, 138
Bsp143I	GATC	4 cut(s)	10, 31, 47, 285
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	100
BspDI	ATCGAT	1 cut(s)	13
BspLI	GGNNCC	2 cut(s)	68, 100
BspPI	GGATC	1 cut(s)	55
BspT104I	TTCGAA	1 cut(s)	240
BssMI	GATC	4 cut(s)	10, 31, 47, 285
BssNI	GRCGYC	3 cut(s)	25, 39, 56
Bst6I	CTCTTC	1 cut(s)	155
BstACI	GRCGYC	3 cut(s)	25, 39, 56
BstBI	TTCGAA	1 cut(s)	240
BstKTI	GATC	4 cut(s)	13, 34, 50, 288
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	4 cut(s)	10, 31, 47, 285
BstSLI	GKGCMC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	31
Bsu15I	ATCGAT	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	100
BsuTUI	ATCGAT	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	98, 99
ClaI	ATCGAT	1 cut(s)	13
CseI	GACGC	2 cut(s)	33, 47
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	5 cut(s)	100, 117, 136, 236, 269
CviKI_1	RGCY	5 cut(s)	100, 117, 136, 236, 269
DpnI	GATC	4 cut(s)	12, 33, 49, 287
DpnII	GATC	4 cut(s)	10, 31, 47, 285
DraI	TTTAAA	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Ecl136II	GAGCTC	1 cut(s)	136
Eco24I	GRGCYC	2 cut(s)	102, 138
Eco53kI	GAGCTC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	136
EcoT38I	GRGCYC	2 cut(s)	102, 138
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	1 cut(s)	251
FaiI	YATR	5 cut(s)	82, 120, 221, 249, 309
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	1 cut(s)	42
FriOI	GRGCYC	2 cut(s)	102, 138
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	1 cut(s)	42
GsaI	CCCAGC	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	100
HgaI	GACGC	2 cut(s)	33, 47
Hin1I	GRCGYC	3 cut(s)	25, 39, 56
Hin1II	CATG	1 cut(s)	251
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	3 cut(s)	105, 127, 176
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	2 cut(s)	35, 131
Hpy8I	GTNNAC	1 cut(s)	54
Hpy99I	CGWCG	7 cut(s)	24, 27, 41, 55, 58, 61, 75
HpyCH4IV	ACGT	1 cut(s)	56
HpySE526I	ACGT	1 cut(s)	56
Hsp92I	GRCGYC	3 cut(s)	25, 39, 56
Hsp92II	CATG	1 cut(s)	251
Kzo9I	GATC	4 cut(s)	10, 31, 47, 285
LmnI	GCTCC	2 cut(s)	133, 141
LpnPI	CCDG	5 cut(s)	21, 30, 81, 115, 186
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	56
MalI	GATC	4 cut(s)	12, 33, 49, 287
MboI	GATC	4 cut(s)	10, 31, 47, 285
MboII	GAAGA	2 cut(s)	142, 159
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	2 cut(s)	102, 138
MluCI	AATT	3 cut(s)	162, 222, 253
MlyI	GAGTC	3 cut(s)	99, 136, 170
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	5 cut(s)	149, 190, 193, 204, 280
MseI	TTAA	2 cut(s)	204, 276
MspA1I	CMGCKG	1 cut(s)	44
NdeII	GATC	4 cut(s)	10, 31, 47, 285
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	2 cut(s)	68, 100
NspV	TTCGAA	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	3 cut(s)	19, 56, 70
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	3 cut(s)	99, 135, 170
PpsI	GAGTC	3 cut(s)	99, 135, 170
PsiI	TTATAA	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	138
PspFI	CCCAGC	1 cut(s)	95
PspN4I	GGNNCC	2 cut(s)	68, 100
PspOMI	GGGCCC	1 cut(s)	98
PspPI	GGNCC	2 cut(s)	98, 99
PsuI	RGATCY	1 cut(s)	31
SacI	GAGCTC	1 cut(s)	138
SalI	GTCGAC	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	204, 276
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	4 cut(s)	10, 31, 47, 285
Sau96I	GGNCC	2 cut(s)	98, 99
SchI	GAGTC	3 cut(s)	99, 136, 170
SduI	GDGCHC	2 cut(s)	102, 138
SetI	ASST	4 cut(s)	59, 119, 138, 238
SfuI	TTCGAA	1 cut(s)	240
SgrDI	CGTCGACG	1 cut(s)	52
Sse9I	AATT	3 cut(s)	162, 222, 253
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	138
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	4 cut(s)	13, 36, 53, 240
TasI	AATT	3 cut(s)	162, 222, 253
TauI	GCSGC	1 cut(s)	44
Tru1I	TTAA	2 cut(s)	204, 276
Tru9I	TTAA	2 cut(s)	204, 276
TspGWI	ACGGA	1 cut(s)	59
XapI	RAATTY	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	53
XspI	CTAG	1 cut(s)	29
ZraI	GACGTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.