Rh1BG179800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0004534
Physical Location & Seq
Forward (+)
28711037 .. 28714757
3721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG179800.1

Sequence Viewer

Length: 354 bp
ATGTTCAAGGTCAGTGAGCAAGCTCCGGTTGCCGTCACGTACAAGGCCGACGCCGCCGTCCTCTCAATTTGGTGTTGGTGTGCTTCCGGATCGCATTCTCAGTGTAGATCTGAGCACTGTTGGCTTTTCTCGGTGTTTCTTCATCGACGCTCCTCGCTTTCTCGTGCTTCTTCTGGACTTGCCTTGGCTTCGTCGTCTCCAAGCCTCGGATTCATCGTCTCCAAGCCTCGGCTCCGTCGTCTCCCAAAATTCTTTCCCTTTGCATTTGCAGTAGTAGATTCCGAAAATCATGTGAATTTGAGTACTGAAGCCTCCATTGACCAAGAGATTATCCGGCCAACCAAGAAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.98

Weight (kDa)

9.4

Isoelectric Point (pI)

64.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
AccIII TCCGGA 1 cut(s) 86
AciI CCGC 1 cut(s) 54
AclWI GGATC 1 cut(s) 97
AcoI YGGCCR 1 cut(s) 335
AcsI RAATTY 2 cut(s) 248, 295
AcuI CTGAAG 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 2 cut(s) 41, 304
AfiI CCNNNNNNNGG 2 cut(s) 206, 228
AgsI TTSAA 1 cut(s) 7
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 3 cut(s) 201, 223, 245
AlwI GGATC 1 cut(s) 97
Aor13HI TCCGGA 1 cut(s) 86
AoxI GGCC 2 cut(s) 45, 335
ApoI RAATTY 2 cut(s) 248, 295
BauI CACGAG 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 117
BceAI ACGGC 2 cut(s) 17, 41
BcoDI GTCTC 3 cut(s) 201, 223, 245
BglII AGATCT 1 cut(s) 107
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmcAI AGTACT 1 cut(s) 304
BmiI GGNNCC 1 cut(s) 233
BsaAI YACGTR 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 3 cut(s) 183, 205, 227
BsaWI WCCGGW 2 cut(s) 25, 86
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 228
BseAI TCCGGA 1 cut(s) 86
BseDI CCNNGG 3 cut(s) 183, 205, 227
BseLI CCNNNNNNNGG 2 cut(s) 206, 228
BseMII CTCAG 2 cut(s) 102, 113
BseRI GAGGAG 1 cut(s) 142
BshFI GGCC 2 cut(s) 47, 337
BsiHKAI GWGCWC 1 cut(s) 117
BsiSI CCGG 3 cut(s) 26, 87, 334
BslI CCNNNNNNNGG 2 cut(s) 206, 228
BsmAI GTCTC 3 cut(s) 201, 223, 245
BsmBI CGTCTC 3 cut(s) 201, 223, 245
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 2 cut(s) 47, 337
Bsp1286I GDGCHC 1 cut(s) 117
Bsp13I TCCGGA 1 cut(s) 86
Bsp143I GATC 2 cut(s) 89, 107
BspACI CCGC 1 cut(s) 54
BspANI GGCC 2 cut(s) 47, 337
BspCNI CTCAG 2 cut(s) 103, 112
BspEI TCCGGA 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 233
BspPI GGATC 1 cut(s) 97
BssECI CCNNGG 3 cut(s) 183, 205, 227
BssMI GATC 2 cut(s) 89, 107
BssNI GRCGYC 1 cut(s) 51
BssSI CACGAG 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 2 cut(s) 99, 111
BstKTI GATC 2 cut(s) 92, 110
BstMAI GTCTC 3 cut(s) 201, 223, 245
BstMBI GATC 2 cut(s) 89, 107
BstMWI GCNNNNNNNGC 3 cut(s) 29, 53, 121
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
BsuRI GGCC 2 cut(s) 47, 337
BtsIMutI CAGTG 3 cut(s) 19, 107, 115
Cac8I GCNNGC 1 cut(s) 21
CseI GACGC 2 cut(s) 59, 156
Csp6I GTAC 2 cut(s) 40, 303
CviAII CATG 1 cut(s) 290
CviJI RGCY 9 cut(s) 23, 47, 124, 188, 204, 226, 232, 311, 337
CviKI_1 RGCY 9 cut(s) 23, 47, 124, 188, 204, 226, 232, 311, 337
CviQI GTAC 2 cut(s) 40, 303
DdeI CTNAG 2 cut(s) 99, 111
DpnI GATC 2 cut(s) 91, 109
DpnII GATC 2 cut(s) 89, 107
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
Esp3I CGTCTC 3 cut(s) 201, 223, 245
FaeI CATG 1 cut(s) 293
FaiI YATR 1 cut(s) 291
FatI CATG 1 cut(s) 289
Fnu4HI GCNGC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 2 cut(s) 47, 337
HapII CCGG 3 cut(s) 26, 87, 334
HgaI GACGC 2 cut(s) 59, 156
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 1 cut(s) 293
HinfI GANTC 2 cut(s) 210, 278
HpaII CCGG 3 cut(s) 26, 87, 334
Hpy188I TCNGA 3 cut(s) 112, 209, 283
Hpy188III TCNNGA 2 cut(s) 87, 174
Hpy99I CGWCG 4 cut(s) 53, 150, 196, 240
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 263, 269
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 53, 121
HpyF3I CTNAG 2 cut(s) 99, 111
HpySE526I ACGT 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 1 cut(s) 293
Kpn2I TCCGGA 1 cut(s) 86
Kzo9I GATC 2 cut(s) 89, 107
LmnI GCTCC 3 cut(s) 28, 155, 237
LpnPI CCDG 4 cut(s) 39, 100, 159, 347
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 34
MalI GATC 2 cut(s) 91, 109
MboI GATC 2 cut(s) 89, 107
MboII GAAGA 2 cut(s) 131, 162
MflI RGATCY 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 3 cut(s) 66, 248, 295
MnlI CCTC 5 cut(s) 71, 163, 215, 237, 322
MroI TCCGGA 1 cut(s) 86
MspI CCGG 3 cut(s) 26, 87, 334
Mva1269I GAATGC 1 cut(s) 94
MwoI GCNNNNNNNGC 3 cut(s) 29, 53, 121
NdeII GATC 2 cut(s) 89, 107
NlaIII CATG 1 cut(s) 293
NlaIV GGNNCC 1 cut(s) 233
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 34
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 235
PctI GAATGC 1 cut(s) 94
PfeI GAWTC 2 cut(s) 210, 278
PkrI GCNGC 1 cut(s) 55
Ppu21I YACGTR 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 233
PsuI RGATCY 1 cut(s) 107
RsaI GTAC 2 cut(s) 41, 304
RsaNI GTAC 2 cut(s) 40, 303
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 2 cut(s) 89, 107
ScaI AGTACT 1 cut(s) 304
SduI GDGCHC 1 cut(s) 117
SetI ASST 3 cut(s) 12, 25, 41
Sse9I AATT 3 cut(s) 66, 248, 295
SsiI CCGC 1 cut(s) 54
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 119
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 145
TasI AATT 3 cut(s) 66, 248, 295
TatI WGTACW 1 cut(s) 302
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 2 cut(s) 210, 278
TscAI CASTG 3 cut(s) 19, 107, 122
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 2 cut(s) 131, 202
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 3 cut(s) 19, 107, 122
XapI RAATTY 2 cut(s) 248, 295
ZrmI AGTACT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.