Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004534

Physical Location & Seq

Genomic Coordinates Reverse (-)

17579264 .. 17580535

Gene Structure 1272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0199500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGACAATGAGAGCGATGAAGAAGCAGAAAATTAAAACAACCGACACTGAGAGAGATGAAGAAGTAGAAGACGAAAGAGATGATGAGAAACCCTGCATGATTCTACAATTGCCAGACCACATAATCCTGGAGATCTTCTCTAGAATCCCAATAAACACGGTCATCCAATGCAAGTATGTGTGCAAGTCTTGGCGCCGTTCTCTCTCAGACCACGAGTTCTCAAAATCCCTATTTGCACGAACTGCGGCGTGCTTGTTTCTCAAAGTCTATAGTCGGACTCCATGCCGGAGCCGAAACACCAAACGTTATCATATACCCCCGAATAAGCACATCTTGGCCAACTTGGAAAGCGTCTCGAGCCCAAACAACGTGGTCTTGAAGCTTTCAGATCCCAATGCCTTATACAACAGGCTCCATTCAAGTTTTACAGGTGTTATGGGATCCTGCAATGGCTTCCTCTGCTTATTCCGACATAATTGTAAAATTGATGCTTTCATTTTTAACATATCCAATCCCATTACCGGTGAGTCTGTACCTCTTCCAGTCAATAAAGAAATAGGTCGTCCAGCTCACTTTGGGTTTGGGTTTAGTCCCATAAGTGATGTCTATAAGGTGGTTGTGTTTACAACCAATGAAATTAATGAACATCGCTTTCACAAAAGAAAACAATGTCGTAAATTGGAGGTGATGGTTTTGACTGTTGGCTCTGGGATTTGGAGAAGAATTGGCAAAGTATCAAATGTCATGCGTGCAGCACGAGAAGGGGTCTTTCATAATGGATTTCTTCACTGGGTTTGCCACTGTAAAAAAGGTTATGGCTCTCTCTTCATACGTGCATTTGATGTTGAAAGCGAGCGTTTCAAGGATTTACCAATGCCCCCTTGTCATTTCCATCCCCATTCTATACCTCAAATGCGAGTCCTAGGAGGTTCACTTTCTGTAAGTGATGGCCGCACGTTTTGGGTAATGAAAGAGTACGGCGTCAAGAAGTCTTGGACCAAAGAGCTTGAAATTGGACGTGGTAAAGTTGATCCTAATGGCGGATATGGGTCCAATATACGAGATGTTGAAGTGCTGAAATTTACAGAGGGGAAAGTTTTGTTGTTAGCAGACAATAATTTGTGCCTCTATACTCCTGAAACCAGGACCCTTGTGAGGGTTGAAATTGATGGGATGCCATCAGGGGGCTTCCATTTCGTGGCGGACCATATTCCGAGCTTTGTTTCTCCGAAGGATATTATCAAGGATTACGTCTCCAAAGTACCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

423

Amino Acids

48.25

Weight (kDa)

9.32

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	34 - 73	7.8e-09	F-box domain
F-box-like	PF12937	34 - 78	1.7e-08	F-box-like
FBA_1	PF07734	127 - 391	6.6e-14	F-box associated beta propeller domain
FBA_3	PF08268	141 - 394	6.9e-23	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004534)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31500 FvH4_3g32320 FvH4_4g00690 FvH4_4g27850 FvH4_7g10870 FvH4_7g10870 FvH4_7g10870
malus_domestica	MD16G1010500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113071 RchiOBHm_Chr7g0220371
rosa_laevigata	RLG00000001298 RLG00000002502 RLG00000028412 RLG00000031890
rosa_multiflora	Rmu_ssc0000390.1_g000001
rosa_roxburghii	Rroxscaffold_153G00436800 Rroxscaffold_153G00436810 Rroxscaffold_1G00031690 Rroxscaffold_2G00104890 Rroxscaffold_2G00148900
rosa_rugosa	Rorug03G0199500 Rorug03G0364300.1 Rorug04G0059300 Rorug05G0361500 Rorug06G0155900
rosa_samantha	Rh1BG179800 Rh2DG595900 Rh3BG075300 Rh4DG164000 Rh6AG040200 Rh7AG433700 Rh7BG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	192
AccB7I	CCANNNNNTGG	1 cut(s)	1198
AciI	CCGC	4 cut(s)	245, 952, 1041, 1202
AclI	AACGTT	1 cut(s)	304
AclWI	GGATC	4 cut(s)	383, 435, 448, 1025
AcoI	YGGCCR	2 cut(s)	336, 949
AcsI	RAATTY	1 cut(s)	1079
AcyI	GRCGYC	2 cut(s)	193, 981
AfaI	GTAC	3 cut(s)	534, 977, 1263
AfiI	CCNNNNNNNGG	6 cut(s)	521, 1040, 1155, 1156, 1184, 1198
AgeI	ACCGGT	1 cut(s)	521
AgsI	TTSAA	7 cut(s)	379, 420, 848, 862, 1010, 1070, 1163
AjiI	CACGTC	1 cut(s)	1019
AjnI	CCWGG	2 cut(s)	126, 1142
AluBI	AGCT	4 cut(s)	382, 569, 1006, 1218
AluI	AGCT	4 cut(s)	382, 569, 1006, 1218
Alw26I	GTCTC	2 cut(s)	358, 1258
AlwI	GGATC	4 cut(s)	383, 435, 448, 1025
Ama87I	CYCGRG	1 cut(s)	355
AoxI	GGCC	2 cut(s)	336, 949
ApeKI	GCWGC	1 cut(s)	752
ApoI	RAATTY	1 cut(s)	1079
AseI	ATTAAT	1 cut(s)	639
AsiGI	ACCGGT	1 cut(s)	521
AspA2I	CCTAGG	1 cut(s)	922
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	4 cut(s)	996, 1050, 1146, 1204
AsuHPI	GGTGA	2 cut(s)	536, 697
AvaI	CYCGRG	1 cut(s)	355
AvaII	GGWCC	4 cut(s)	996, 1050, 1146, 1204
AvrII	CCTAGG	1 cut(s)	922
BalI	TGGCCA	1 cut(s)	338
BamHI	GGATCC	1 cut(s)	440
BanI	GGYRCC	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	362
BauI	CACGAG	2 cut(s)	212, 756
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	764
BccI	CCATC	5 cut(s)	682, 900, 941, 1163, 1186
BceAI	ACGGC	2 cut(s)	180, 994
BciT130I	CCWGG	2 cut(s)	128, 1144
BcoDI	GTCTC	2 cut(s)	358, 1258
BfaI	CTAG	3 cut(s)	141, 923, 1266
BfmI	CTRYAG	1 cut(s)	268
BfoI	RGCGCY	1 cut(s)	196
BglII	AGATCT	1 cut(s)	132
BisI	GCNGC	3 cut(s)	246, 753, 952
BlnI	CCTAGG	1 cut(s)	922
BlsI	GCNGC	3 cut(s)	247, 754, 953
Bme1390I	CCNGG	2 cut(s)	128, 1144
Bme18I	GGWCC	4 cut(s)	996, 1050, 1146, 1204
BmeT110I	CYCGRG	1 cut(s)	355
BmgBI	CACGTC	1 cut(s)	1019
BmgT120I	GGNCC	4 cut(s)	996, 1050, 1146, 1204
BmiI	GGNNCC	6 cut(s)	194, 290, 413, 442, 1051, 1148
BmrFI	CCNGG	2 cut(s)	128, 1144
BmrI	ACTGGG	1 cut(s)	799
BmsI	GCATC	2 cut(s)	478, 1164
BmuI	ACTGGG	1 cut(s)	799
BpiI	GAAGAC	1 cut(s)	75
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	1 cut(s)	149
BsaAI	YACGTR	1 cut(s)	833
BsaHI	GRCGYC	2 cut(s)	193, 981
BsaJI	CCNNGG	1 cut(s)	922
BsaWI	WCCGGW	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	6 cut(s)	521, 1040, 1155, 1156, 1184, 1198
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	2 cut(s)	542, 794
Bse3DI	GCAATG	1 cut(s)	454
BseBI	CCWGG	2 cut(s)	128, 1144
BseDI	CCNNGG	1 cut(s)	922
BseGI	GGATG	3 cut(s)	162, 892, 1179
BseLI	CCNNNNNNNGG	6 cut(s)	521, 1040, 1155, 1156, 1184, 1198
BseMI	GCAATG	1 cut(s)	454
BseMII	CTCAG	2 cut(s)	39, 219
BseNI	ACTGG	2 cut(s)	542, 794
BseXI	GCAGC	1 cut(s)	764
BsgI	GTGCAG	1 cut(s)	771
BshFI	GGCC	2 cut(s)	338, 951
BshNI	GGYRCC	1 cut(s)	192
BshTI	ACCGGT	1 cut(s)	521
BsiHKCI	CYCGRG	1 cut(s)	355
BsiSI	CCGG	2 cut(s)	286, 522
BslFI	GGGAC	1 cut(s)	576
BslI	CCNNNNNNNGG	6 cut(s)	521, 1040, 1155, 1156, 1184, 1198
BsmAI	GTCTC	2 cut(s)	358, 1258
BsmBI	CGTCTC	2 cut(s)	358, 1258
BsmFI	GGGAC	1 cut(s)	576
BsnI	GGCC	2 cut(s)	338, 951
BsoBI	CYCGRG	1 cut(s)	355
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp143I	GATC	4 cut(s)	132, 388, 440, 1030
BspACI	CCGC	4 cut(s)	245, 952, 1041, 1202
BspANI	GGCC	2 cut(s)	338, 951
BspCNI	CTCAG	2 cut(s)	40, 218
BspLI	GGNNCC	6 cut(s)	194, 290, 413, 442, 1051, 1148
BspPI	GGATC	4 cut(s)	383, 435, 448, 1025
BspT107I	GGYRCC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	454
BsrFI	RCCGGY	1 cut(s)	521
BsrI	ACTGG	2 cut(s)	542, 794
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	1 cut(s)	922
BssMI	GATC	4 cut(s)	132, 388, 440, 1030
BssNI	GRCGYC	2 cut(s)	193, 981
BssSI	CACGAG	2 cut(s)	212, 756
BssT1I	CCWWGG	1 cut(s)	922
Bst2BI	CACGAG	2 cut(s)	212, 756
Bst2UI	CCWGG	2 cut(s)	128, 1144
Bst4CI	ACNGT	3 cut(s)	160, 700, 803
Bst6I	CTCTTC	2 cut(s)	543, 830
BstACI	GRCGYC	2 cut(s)	193, 981
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstBAI	YACGTR	1 cut(s)	833
BstC8I	GCNNGC	3 cut(s)	250, 750, 854
BstDEI	CTNAG	2 cut(s)	48, 205
BstF5I	GGATG	3 cut(s)	162, 892, 1179
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	4 cut(s)	135, 391, 443, 1033
BstMAI	GTCTC	2 cut(s)	358, 1258
BstMBI	GATC	4 cut(s)	132, 388, 440, 1030
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 357, 459
BstNI	CCWGG	2 cut(s)	128, 1144
BstSCI	CCNGG	2 cut(s)	126, 1142
BstSFI	CTRYAG	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	764
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	3 cut(s)	132, 388, 440
BstYI	RGATCY	3 cut(s)	132, 388, 440
BsuRI	GGCC	2 cut(s)	338, 951
BtgZI	GCGATG	2 cut(s)	29, 632
BtrI	CACGTC	1 cut(s)	1019
BtsCI	GGATG	3 cut(s)	162, 892, 1179
BtsIMutI	CAGTG	3 cut(s)	45, 787, 799
Cac8I	GCNNGC	3 cut(s)	250, 750, 854
CfoI	GCGC	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	4 cut(s)	996, 1050, 1146, 1204
CseI	GACGC	2 cut(s)	340, 970
Csp6I	GTAC	3 cut(s)	533, 976, 1262
CspAI	ACCGGT	1 cut(s)	521
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	3 cut(s)	97, 282, 745
CviQI	GTAC	3 cut(s)	533, 976, 1262
DdeI	CTNAG	2 cut(s)	48, 205
DinI	GGCGCC	1 cut(s)	194
DpnI	GATC	4 cut(s)	134, 390, 442, 1032
DpnII	GATC	4 cut(s)	132, 388, 440, 1030
EaeI	YGGCCR	2 cut(s)	336, 949
Eam1104I	CTCTTC	2 cut(s)	543, 830
EarI	CTCTTC	2 cut(s)	543, 830
EciI	GGCGGA	2 cut(s)	1056, 1217
Eco130I	CCWWGG	1 cut(s)	922
Eco24I	GRGCYC	1 cut(s)	362
Eco47I	GGWCC	4 cut(s)	996, 1050, 1146, 1204
Eco88I	CYCGRG	1 cut(s)	355
EcoO109I	RGGNCCY	1 cut(s)	1146
EcoRII	CCWGG	2 cut(s)	126, 1142
EcoT14I	CCWWGG	1 cut(s)	922
EcoT38I	GRGCYC	1 cut(s)	362
EgeI	GGCGCC	1 cut(s)	194
EheI	GGCGCC	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	922
Esp3I	CGTCTC	2 cut(s)	358, 1258
FaeI	CATG	3 cut(s)	100, 285, 748
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	3 cut(s)	96, 281, 744
Fnu4HI	GCNGC	3 cut(s)	246, 753, 952
FokI	GGATG	3 cut(s)	149, 879, 1186
FriOI	GRGCYC	1 cut(s)	362
Fsp4HI	GCNGC	3 cut(s)	246, 753, 952
FspBI	CTAG	3 cut(s)	141, 923, 1266
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	3 cut(s)	246, 753, 952
GsuI	CTGGAG	1 cut(s)	149
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	2 cut(s)	338, 951
HapII	CCGG	2 cut(s)	286, 522
HgaI	GACGC	2 cut(s)	340, 970
HhaI	GCGC	1 cut(s)	195
Hin1I	GRCGYC	2 cut(s)	193, 981
Hin1II	CATG	3 cut(s)	100, 285, 748
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	5 cut(s)	100, 144, 277, 527, 918
HpaII	CCGG	2 cut(s)	286, 522
HphI	GGTGA	2 cut(s)	536, 697
Hpy166II	GTNNAC	2 cut(s)	624, 932
Hpy188I	TCNGA	6 cut(s)	208, 276, 388, 470, 1215, 1230
Hpy188III	TCNNGA	5 cut(s)	141, 355, 376, 985, 1136
Hpy8I	GTNNAC	2 cut(s)	624, 932
HpyAV	CCTTC	2 cut(s)	755, 1225
HpyCH4III	ACNGT	3 cut(s)	160, 700, 803
HpyCH4IV	ACGT	6 cut(s)	304, 369, 832, 956, 1018, 1251
HpyCH4V	TGCA	7 cut(s)	96, 171, 183, 236, 447, 752, 836
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 357, 459
HpyF3I	CTNAG	2 cut(s)	48, 205
HpySE526I	ACGT	6 cut(s)	304, 369, 832, 956, 1018, 1251
Hsp92I	GRCGYC	2 cut(s)	193, 981
Hsp92II	CATG	3 cut(s)	100, 285, 748
HspAI	GCGC	1 cut(s)	193
KasI	GGCGCC	1 cut(s)	192
Kzo9I	GATC	4 cut(s)	132, 388, 440, 1030
LmnI	GCTCC	2 cut(s)	288, 417
Lsp1109I	GCAGC	1 cut(s)	764
LweI	GCATC	2 cut(s)	478, 1164
MaeI	CTAG	3 cut(s)	141, 923, 1266
MaeII	ACGT	6 cut(s)	304, 369, 832, 956, 1018, 1251
MalI	GATC	4 cut(s)	134, 390, 442, 1032
MboI	GATC	4 cut(s)	132, 388, 440, 1030
MboII	GAAGA	8 cut(s)	31, 71, 80, 127, 530, 732, 776, 817
MfeI	CAATTG	1 cut(s)	107
MflI	RGATCY	3 cut(s)	132, 388, 440
MhlI	GDGCHC	1 cut(s)	362
MlsI	TGGCCA	1 cut(s)	338
MluNI	TGGCCA	1 cut(s)	338
Mly113I	GGCGCC	1 cut(s)	193
MlyI	GAGTC	3 cut(s)	271, 536, 927
MmeI	TCCRAC	2 cut(s)	254, 493
MnlI	CCTC	8 cut(s)	467, 546, 676, 918, 920, 1081, 1136, 1149
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	4 cut(s)	33, 501, 639, 1270
Msp20I	TGGCCA	1 cut(s)	338
MspI	CCGG	2 cut(s)	286, 522
MspR9I	CCNGG	2 cut(s)	128, 1144
MunI	CAATTG	1 cut(s)	107
MvaI	CCWGG	2 cut(s)	128, 1144
MwoI	GCNNNNNNNGC	3 cut(s)	242, 357, 459
NarI	GGCGCC	1 cut(s)	193
NdeII	GATC	4 cut(s)	132, 388, 440, 1030
NlaIII	CATG	3 cut(s)	100, 285, 748
NlaIV	GGNNCC	6 cut(s)	194, 290, 413, 442, 1051, 1148
PaeR7I	CTCGAG	1 cut(s)	355
PfeI	GAWTC	2 cut(s)	100, 144
PflMI	CCANNNNNTGG	1 cut(s)	1198
PfoI	TCCNGGA	1 cut(s)	126
PinAI	ACCGGT	1 cut(s)	521
PkrI	GCNGC	3 cut(s)	247, 754, 953
PleI	GAGTC	3 cut(s)	271, 535, 926
PluTI	GGCGCC	1 cut(s)	196
PpsI	GAGTC	3 cut(s)	271, 535, 926
Ppu21I	YACGTR	1 cut(s)	833
PpuMI	RGGWCCY	1 cut(s)	1146
PshBI	ATTAAT	1 cut(s)	639
Psp1406I	AACGTT	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	1146
Psp6I	CCWGG	2 cut(s)	126, 1142
PspGI	CCWGG	2 cut(s)	126, 1142
PspN4I	GGNNCC	6 cut(s)	194, 290, 413, 442, 1051, 1148
PspPI	GGNCC	4 cut(s)	996, 1050, 1146, 1204
PspPPI	RGGWCCY	1 cut(s)	1146
PsuI	RGATCY	3 cut(s)	132, 388, 440
RsaI	GTAC	3 cut(s)	534, 977, 1263
RsaNI	GTAC	3 cut(s)	533, 976, 1262
SaqAI	TTAA	4 cut(s)	33, 501, 639, 1270
SatI	GCNGC	3 cut(s)	246, 753, 952
Sau3AI	GATC	4 cut(s)	132, 388, 440, 1030
Sau96I	GGNCC	4 cut(s)	996, 1050, 1146, 1204
SchI	GAGTC	3 cut(s)	271, 536, 927
ScrFI	CCNGG	2 cut(s)	128, 1144
SduI	GDGCHC	1 cut(s)	362
SfaNI	GCATC	2 cut(s)	478, 1164
SfcI	CTRYAG	1 cut(s)	268
SfoI	GGCGCC	1 cut(s)	194
Sfr274I	CTCGAG	1 cut(s)	355
SinI	GGWCC	4 cut(s)	996, 1050, 1146, 1204
SlaI	CTCGAG	1 cut(s)	355
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
SsiI	CCGC	4 cut(s)	245, 952, 1041, 1202
SspDI	GGCGCC	1 cut(s)	192
SspMI	CTAG	3 cut(s)	141, 923, 1266
StyD4I	CCNGG	2 cut(s)	126, 1142
StyI	CCWWGG	1 cut(s)	922
TaaI	ACNGT	3 cut(s)	160, 700, 803
TaiI	ACGT	6 cut(s)	307, 372, 835, 959, 1021, 1254
TaqI	TCGA	1 cut(s)	356
TauI	GCSGC	2 cut(s)	248, 954
TfiI	GAWTC	2 cut(s)	100, 144
Tru1I	TTAA	4 cut(s)	33, 501, 639, 1270
Tru9I	TTAA	4 cut(s)	33, 501, 639, 1270
TscAI	CASTG	3 cut(s)	52, 794, 806
TseI	GCWGC	1 cut(s)	752
TspDTI	ATGAA	8 cut(s)	32, 72, 484, 648, 657, 761, 817, 983
TspRI	CASTG	3 cut(s)	52, 794, 806
Van91I	CCANNNNNTGG	1 cut(s)	1198
VpaK11BI	GGWCC	4 cut(s)	996, 1050, 1146, 1204
VspI	ATTAAT	1 cut(s)	639
XapI	RAATTY	1 cut(s)	1079
XbaI	TCTAGA	1 cut(s)	140
XhoI	CTCGAG	1 cut(s)	355
XmaJI	CCTAGG	1 cut(s)	922
XspI	CTAG	3 cut(s)	141, 923, 1266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.