Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000153

Orthogroup ID

OG0004534

Physical Location & Seq

Genomic Coordinates Reverse (-)

391709 .. 397073

Gene Structure 5365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_153G00436810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGACCACGTCTATAACTACCATTCCGGATACCATGGTTGTAAGAAAAGAAGTGAGTTGGTTATTGTTAACGAAAATCAACAAATCTCGCGGCGTAGTATCGGGACCCTTGCTAGTAATTCATGGAATGGGCACTATGGTGGCAAGGTCGATGGATTGGAACAATCTTGATGAGGAGATTAATAGAAGGATGCGAGAGAGCAGGAAGAAAAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

72

Amino Acids

8.29

Weight (kDa)

10.64

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004534)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31500 FvH4_3g32320 FvH4_4g00690 FvH4_4g27850 FvH4_7g10870 FvH4_7g10870 FvH4_7g10870
malus_domestica	MD16G1010500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113071 RchiOBHm_Chr7g0220371
rosa_laevigata	RLG00000001298 RLG00000002502 RLG00000028412 RLG00000031890
rosa_multiflora	Rmu_ssc0000390.1_g000001
rosa_roxburghii	Rroxscaffold_153G00436800 Rroxscaffold_153G00436810 Rroxscaffold_1G00031690 Rroxscaffold_2G00104890 Rroxscaffold_2G00148900
rosa_rugosa	Rorug03G0199500 Rorug03G0364300.1 Rorug04G0059300 Rorug05G0361500 Rorug06G0155900
rosa_samantha	Rh1BG179800 Rh2DG595900 Rh3BG075300 Rh4DG164000 Rh6AG040200 Rh7AG433700 Rh7BG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	90
AccIII	TCCGGA	1 cut(s)	25
AciI	CCGC	1 cut(s)	90
AjiI	CACGTC	1 cut(s)	9
AleI	CACNNNNGTG	1 cut(s)	137
Aor13HI	TCCGGA	1 cut(s)	25
AseI	ATTAAT	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	134
BaeI	ACNNNNGTAYC	2 cut(s)	21, 54
BccI	CCATC	1 cut(s)	145
BciVI	GTATCC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	113
BfuI	GTATCC	1 cut(s)	22
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	104
BmgBI	CACGTC	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	2 cut(s)	105, 106
BmsI	GCATC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	25
BseAI	TCCGGA	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	134
Bsh1236I	CGCG	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp13I	TCCGGA	1 cut(s)	25
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	1 cut(s)	90
BspEI	TCCGGA	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	105, 106
BssECI	CCNNGG	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	195
BstFNI	CGCG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	134
BstUI	CGCG	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	22
BtgI	CCRYGG	1 cut(s)	33
BtrI	CACGTC	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	195
Cfr13I	GGNCC	1 cut(s)	104
CviAII	CATG	2 cut(s)	34, 122
Eco130I	CCWWGG	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	37, 125
FaiI	YATR	4 cut(s)	14, 35, 123, 137
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	2 cut(s)	33, 121
Fnu4HI	GCNGC	1 cut(s)	91
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	91
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	1 cut(s)	91
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	2 cut(s)	37, 125
HincII	GTYRAC	1 cut(s)	69
HindII	GTYRAC	1 cut(s)	69
HpaI	GTTAAC	1 cut(s)	69
HpaII	CCGG	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188III	TCNNGA	3 cut(s)	26, 102, 167
Hpy8I	GTNNAC	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	180
HpyCH4IV	ACGT	1 cut(s)	8
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	2 cut(s)	37, 125
KflI	GGGWCCC	1 cut(s)	104
Kpn2I	TCCGGA	1 cut(s)	25
KspAI	GTTAAC	1 cut(s)	69
LpnPI	CCDG	2 cut(s)	39, 187
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	8
MboII	GAAGA	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	1 cut(s)	117
MnlI	CCTC	1 cut(s)	166
MroI	TCCGGA	1 cut(s)	25
MseI	TTAA	2 cut(s)	68, 180
MslI	CAYNNNNRTG	1 cut(s)	137
MspI	CCGG	1 cut(s)	26
MvnI	CGCG	1 cut(s)	90
NcoI	CCATGG	1 cut(s)	33
NlaIII	CATG	2 cut(s)	37, 125
NlaIV	GGNNCC	2 cut(s)	105, 106
OliI	CACNNNNGTG	1 cut(s)	137
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	92
PpuMI	RGGWCCY	1 cut(s)	104
PshBI	ATTAAT	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	105, 106
PspPI	GGNCC	1 cut(s)	104
PspPPI	RGGWCCY	1 cut(s)	104
PsyI	GACNNNGTC	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	2 cut(s)	68, 180
SatI	GCNGC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	2 cut(s)	11, 149
SfaNI	GCATC	1 cut(s)	180
SinI	GGWCC	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	117
SsiI	CCGC	1 cut(s)	90
SspMI	CTAG	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	33
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	1 cut(s)	149
TasI	AATT	1 cut(s)	117
TauI	GCSGC	1 cut(s)	93
Tru1I	TTAA	2 cut(s)	68, 180
Tru9I	TTAA	2 cut(s)	68, 180
TspDTI	ATGAA	1 cut(s)	110
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	104
VspI	ATTAAT	1 cut(s)	180
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.