Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000390.1

Orthogroup ID

OG0004534

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1125

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000390.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 181 bp

atggcgggtgcagcaccgactcgggtactgatgggagtgaacgagtcgacgatcaagggctacccgcacgcctccataagtagccgcaaagccttcgagtggactctcgataagatcgtccgctccaacacctccggcttcaagcttctcttcctccatgtccaagttcctgacgaagacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

60

Amino Acids

6.62

Weight (kDa)

8.18

Isoelectric Point (pI)

17.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004534)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31500 FvH4_3g32320 FvH4_4g00690 FvH4_4g27850 FvH4_7g10870 FvH4_7g10870 FvH4_7g10870
malus_domestica	MD16G1010500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113071 RchiOBHm_Chr7g0220371
rosa_laevigata	RLG00000001298 RLG00000002502 RLG00000028412 RLG00000031890
rosa_multiflora	Rmu_ssc0000390.1_g000001
rosa_roxburghii	Rroxscaffold_153G00436800 Rroxscaffold_153G00436810 Rroxscaffold_1G00031690 Rroxscaffold_2G00104890 Rroxscaffold_2G00148900
rosa_rugosa	Rorug03G0199500 Rorug03G0364300.1 Rorug04G0059300 Rorug05G0361500 Rorug06G0155900
rosa_samantha	Rh1BG179800 Rh2DG595900 Rh3BG075300 Rh4DG164000 Rh6AG040200 Rh7AG433700 Rh7BG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	47
AciI	CCGC	4 cut(s)	5, 65, 85, 121
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	1 cut(s)	142
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Ama87I	CYCGRG	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	11
AvaI	CYCGRG	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	1 cut(s)	25
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BisI	GCNGC	2 cut(s)	12, 85
BlsI	GCNGC	2 cut(s)	13, 86
BmeT110I	CYCGRG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	51, 114
BspACI	CCGC	4 cut(s)	5, 65, 85, 121
BsrBI	CCGCTC	1 cut(s)	123
BssMI	GATC	2 cut(s)	51, 114
Bst6I	CTCTTC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	69
BstKTI	GATC	2 cut(s)	54, 117
BstMBI	GATC	2 cut(s)	51, 114
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	5 cut(s)	60, 84, 92, 138, 145
CviKI_1	RGCY	5 cut(s)	60, 84, 92, 138, 145
CviQI	GTAC	1 cut(s)	26
DpnI	GATC	2 cut(s)	53, 116
DpnII	GATC	2 cut(s)	51, 114
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	21
FaeI	CATG	1 cut(s)	161
FaiI	YATR	2 cut(s)	77, 159
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	1 cut(s)	157
FauI	CCCGC	1 cut(s)	72
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	2 cut(s)	12, 85
Fsp4HI	GCNGC	2 cut(s)	12, 85
GluI	GCNGC	2 cut(s)	12, 85
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	1 cut(s)	161
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	3 cut(s)	19, 44, 103
HpaII	CCGG	1 cut(s)	135
Hpy166II	GTNNAC	3 cut(s)	40, 48, 102
Hpy188III	TCNNGA	2 cut(s)	107, 170
Hpy8I	GTNNAC	3 cut(s)	40, 48, 102
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	103
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	51, 114
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	1 cut(s)	148
Lsp1109I	GCAGC	1 cut(s)	23
MalI	GATC	2 cut(s)	53, 116
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	2 cut(s)	51, 114
MboII	GAAGA	1 cut(s)	142
MlyI	GAGTC	3 cut(s)	13, 53, 97
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	3 cut(s)	82, 142, 164
MspI	CCGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	51, 114
NlaIII	CATG	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	13, 86
PleI	GAGTC	3 cut(s)	13, 52, 97
PpsI	GAGTC	3 cut(s)	13, 52, 97
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SalI	GTCGAC	1 cut(s)	46
SatI	GCNGC	2 cut(s)	12, 85
Sau3AI	GATC	2 cut(s)	51, 114
SchI	GAGTC	3 cut(s)	13, 53, 97
SetI	ASST	2 cut(s)	134, 147
SsiI	CCGC	4 cut(s)	5, 65, 85, 121
TaqI	TCGA	3 cut(s)	47, 96, 108
TauI	GCSGC	1 cut(s)	87
TseI	GCWGC	1 cut(s)	11
XmiI	GTMKAC	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.