Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004534

Physical Location & Seq

Genomic Coordinates Forward (+)

22513601 .. 22514887

Gene Structure 1287 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028412

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAGTCATTCACGGGCTTTGGTCCGTCTCTTGCTATTCTTCCTGCCTTCTGCTATAGGGTGGTTGGCAGGATTTTGGCCGATCGAGGGTCGGAGACCCAGGACGAAGGTTCTGAGGAGTGCAAGGCCAATCATGGTCTTCGGCGGTCGCTCACGGTTGATTCATACTGTCTCTTCGACTTCTCCAAGTTGATGATGGGCTGGGGATCAGGGATTGAGCTGGCGGTGGTGGTGGACTGGCCATCAGGAATCACGATGGCGGATATGCAGAAGCACTTGGACCGTAGAAGGCATCGAGTGTCCTACTTAACCGGCTTCAATGGCCCTAGAAGCTTCAAGGTGTTAACTCACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.23

Weight (kDa)

7.78

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004534)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31500 FvH4_3g32320 FvH4_4g00690 FvH4_4g27850 FvH4_7g10870 FvH4_7g10870 FvH4_7g10870
malus_domestica	MD16G1010500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113071 RchiOBHm_Chr7g0220371
rosa_laevigata	RLG00000001298 RLG00000002502 RLG00000028412 RLG00000031890
rosa_multiflora	Rmu_ssc0000390.1_g000001
rosa_roxburghii	Rroxscaffold_153G00436800 Rroxscaffold_153G00436810 Rroxscaffold_1G00031690 Rroxscaffold_2G00104890 Rroxscaffold_2G00148900
rosa_rugosa	Rorug03G0199500 Rorug03G0364300.1 Rorug04G0059300 Rorug05G0361500 Rorug06G0155900
rosa_samantha	Rh1BG179800 Rh2DG595900 Rh3BG075300 Rh4DG164000 Rh6AG040200 Rh7AG433700 Rh7BG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	145, 224, 260
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	2 cut(s)	78, 239
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	319, 337
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	2 cut(s)	220, 333
AluI	AGCT	2 cut(s)	220, 333
Alw26I	GTCTC	3 cut(s)	33, 89, 176
AlwI	GGATC	1 cut(s)	214
AoxI	GGCC	4 cut(s)	78, 126, 239, 322
AspS9I	GGNCC	3 cut(s)	23, 280, 323
AsuHPI	GGTGA	1 cut(s)	341
AvaII	GGWCC	2 cut(s)	23, 280
BalI	TGGCCA	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	131
BccI	CCATC	3 cut(s)	190, 250, 250
BciT130I	CCWGG	1 cut(s)	101
BcoDI	GTCTC	3 cut(s)	33, 89, 176
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	2 cut(s)	23, 280
BmgT120I	GGNCC	3 cut(s)	23, 280, 323
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	131
BseYI	CCCAGC	1 cut(s)	201
Bsh1285I	CGRYCG	2 cut(s)	85, 149
BshFI	GGCC	4 cut(s)	80, 128, 241, 324
BsiEI	CGRYCG	2 cut(s)	85, 149
BsiSI	CCGG	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	3 cut(s)	33, 89, 176
BsmBI	CGTCTC	1 cut(s)	33
BsnI	GGCC	4 cut(s)	80, 128, 241, 324
Bso31I	GGTCTC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	82, 206
BspACI	CCGC	3 cut(s)	145, 224, 260
BspANI	GGCC	4 cut(s)	80, 128, 241, 324
BspCNI	CTCAG	1 cut(s)	106
BspPI	GGATC	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	242
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	2 cut(s)	82, 206
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	3 cut(s)	157, 170, 284
Bst6I	CTCTTC	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	114
BstKTI	GATC	2 cut(s)	85, 209
BstMAI	GTCTC	3 cut(s)	33, 89, 176
BstMBI	GATC	2 cut(s)	82, 206
BstMCI	CGRYCG	2 cut(s)	85, 149
BstMWI	GCNNNNNNNGC	2 cut(s)	321, 330
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	131
BsuRI	GGCC	4 cut(s)	80, 128, 241, 324
Cac8I	GCNNGC	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	3 cut(s)	23, 280, 323
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	9 cut(s)	18, 80, 128, 201, 220, 241, 315, 324, 333
CviKI_1	RGCY	9 cut(s)	18, 80, 128, 201, 220, 241, 315, 324, 333
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	2 cut(s)	84, 208
DpnII	GATC	2 cut(s)	82, 206
EaeI	YGGCCR	2 cut(s)	78, 239
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
EciI	GGCGGA	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	89
Eco47I	GGWCC	2 cut(s)	23, 280
EcoRII	CCWGG	1 cut(s)	99
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	1 cut(s)	137
FaiI	YATR	4 cut(s)	57, 135, 166, 266
FatI	CATG	1 cut(s)	133
FspBI	CTAG	1 cut(s)	327
GsaI	CCCAGC	1 cut(s)	205
HaeIII	GGCC	4 cut(s)	80, 128, 241, 324
HapII	CCGG	1 cut(s)	312
Hin1II	CATG	1 cut(s)	137
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HindIII	AAGCTT	1 cut(s)	331
HinfI	GANTC	3 cut(s)	5, 161, 249
HpaI	GTTAAC	1 cut(s)	345
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	2 cut(s)	235, 345
Hpy188I	TCNGA	2 cut(s)	94, 115
Hpy188III	TCNNGA	2 cut(s)	246, 253
Hpy8I	GTNNAC	2 cut(s)	235, 345
HpyAV	CCTTC	3 cut(s)	58, 101, 282
HpyCH4III	ACNGT	3 cut(s)	157, 170, 284
HpyCH4V	TGCA	2 cut(s)	123, 268
HpyF10VI	GCNNNNNNNGC	2 cut(s)	321, 330
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	137
KspAI	GTTAAC	1 cut(s)	345
Kzo9I	GATC	2 cut(s)	82, 206
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	327
MalI	GATC	2 cut(s)	84, 208
MboI	GATC	2 cut(s)	82, 206
MboII	GAAGA	3 cut(s)	32, 131, 166
MlsI	TGGCCA	1 cut(s)	241
MluNI	TGGCCA	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	2 cut(s)	80, 109
Mox20I	TGGCCA	1 cut(s)	241
MscI	TGGCCA	1 cut(s)	241
MseI	TTAA	2 cut(s)	308, 344
Msp20I	TGGCCA	1 cut(s)	241
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	321, 330
NdeII	GATC	2 cut(s)	82, 206
NlaIII	CATG	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	161, 249
Ple19I	CGATCG	1 cut(s)	85
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	99
PspPI	GGNCC	3 cut(s)	23, 280, 323
PvuI	CGATCG	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	308, 344
Sau3AI	GATC	2 cut(s)	82, 206
Sau96I	GGNCC	3 cut(s)	23, 280, 323
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	101
SetI	ASST	5 cut(s)	112, 222, 335, 342, 354
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	1 cut(s)	55
SinI	GGWCC	2 cut(s)	23, 280
SsiI	CCGC	3 cut(s)	145, 224, 260
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	99
TaaI	ACNGT	3 cut(s)	157, 170, 284
TaqI	TCGA	3 cut(s)	85, 177, 295
TfiI	GAWTC	2 cut(s)	161, 249
Tru1I	TTAA	2 cut(s)	308, 344
Tru9I	TTAA	2 cut(s)	308, 344
TspDTI	ATGAA	1 cut(s)	153
TspGWI	ACGGA	1 cut(s)	15
VpaK11BI	GGWCC	2 cut(s)	23, 280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.