Rh6AG040200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004534
Physical Location & Seq
Forward (+)
5535315 .. 5535889
575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG040200.1

Sequence Viewer

Length: 207 bp
ATGAGGCGCGAGGAGTCTCTGGAGACATCTCAACACCAAACGGCGCCGCCGCAGCTGAGGGCCTTCACTGTGGAGGTCGACGTCGGCGCCAACGACTCTGTAGAAAAGGCGAAGCTAGATGATGGACTATCAGATTTGTTGGGAGAGCTAAAGGATATGGCCTTTGATGGACTATTCAGAATTTTGTTTGGATTTGGCCTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.57

Weight (kDa)

4.46

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 84
AccB1I GGYRCC 2 cut(s) 43, 86
AccI GTMKAC 1 cut(s) 78
AccII CGCG 1 cut(s) 9
AciI CCGC 2 cut(s) 47, 50
AcsI RAATTY 1 cut(s) 180
AcyI GRCGYC 3 cut(s) 44, 81, 87
AluBI AGCT 3 cut(s) 55, 115, 148
AluI AGCT 3 cut(s) 55, 115, 148
Alw26I GTCTC 2 cut(s) 17, 21
AoxI GGCC 3 cut(s) 60, 159, 196
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 180
AspLEI GCGC 3 cut(s) 9, 46, 89
AspS9I GGNCC 1 cut(s) 60
BanI GGYRCC 2 cut(s) 43, 86
BbvCI CCTCAGC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 64
BccI CCATC 2 cut(s) 116, 161
BceAI ACGGC 1 cut(s) 57
BcoDI GTCTC 2 cut(s) 17, 21
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 2 cut(s) 47, 90
BisI GCNGC 3 cut(s) 47, 50, 53
BlsI GCNGC 3 cut(s) 48, 51, 54
BmgT120I GGNCC 1 cut(s) 60
BmiI GGNNCC 2 cut(s) 45, 88
BpmI CTGGAG 1 cut(s) 41
Bpu10I CCTNAGC 1 cut(s) 56
BsaHI GRCGYC 3 cut(s) 44, 81, 87
BseMII CTCAG 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 9
BshFI GGCC 3 cut(s) 62, 161, 198
BshNI GGYRCC 2 cut(s) 43, 86
BsmAI GTCTC 2 cut(s) 17, 21
BsnI GGCC 3 cut(s) 62, 161, 198
BspACI CCGC 2 cut(s) 47, 50
BspANI GGCC 3 cut(s) 62, 161, 198
BspCNI CTCAG 1 cut(s) 48
BspFNI CGCG 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 45, 88
BspT107I GGYRCC 2 cut(s) 43, 86
BssNI GRCGYC 3 cut(s) 44, 81, 87
Bst4CI ACNGT 1 cut(s) 70
BstACI GRCGYC 3 cut(s) 44, 81, 87
BstDEI CTNAG 1 cut(s) 56
BstFNI CGCG 1 cut(s) 9
BstH2I RGCGCY 2 cut(s) 47, 90
BstHHI GCGC 3 cut(s) 9, 46, 89
BstMAI GTCTC 2 cut(s) 17, 21
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 64
BsuRI GGCC 3 cut(s) 62, 161, 198
BtsIMutI CAGTG 1 cut(s) 66
CfoI GCGC 3 cut(s) 9, 46, 89
Cfr13I GGNCC 1 cut(s) 60
CviJI RGCY 6 cut(s) 55, 62, 115, 148, 161, 198
CviKI_1 RGCY 6 cut(s) 55, 62, 115, 148, 161, 198
DdeI CTNAG 1 cut(s) 56
DinI GGCGCC 2 cut(s) 45, 88
EcoO109I RGGNCCY 1 cut(s) 60
EgeI GGCGCC 2 cut(s) 45, 88
EheI GGCGCC 2 cut(s) 45, 88
FaiI YATR 1 cut(s) 158
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 3 cut(s) 47, 50, 53
Fsp4HI GCNGC 3 cut(s) 47, 50, 53
FspBI CTAG 1 cut(s) 116
GlaI GCGC 3 cut(s) 8, 45, 88
GluI GCNGC 3 cut(s) 47, 50, 53
GsuI CTGGAG 1 cut(s) 41
HaeII RGCGCY 2 cut(s) 47, 90
HaeIII GGCC 3 cut(s) 62, 161, 198
HhaI GCGC 3 cut(s) 9, 46, 89
Hin1I GRCGYC 3 cut(s) 44, 81, 87
Hin6I GCGC 3 cut(s) 7, 44, 87
HinP1I GCGC 3 cut(s) 7, 44, 87
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 2 cut(s) 14, 95
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 133, 179
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 2 cut(s) 83, 86
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 1 cut(s) 56
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 3 cut(s) 44, 81, 87
HspAI GCGC 3 cut(s) 7, 44, 87
KasI GGCGCC 2 cut(s) 43, 86
LpnPI CCDG 1 cut(s) 5
Lsp1109I GCAGC 1 cut(s) 64
MaeI CTAG 1 cut(s) 116
MaeII ACGT 1 cut(s) 81
MluCI AATT 1 cut(s) 180
Mly113I GGCGCC 2 cut(s) 44, 87
MlyI GAGTC 2 cut(s) 23, 89
MnlI CCTC 3 cut(s) 4, 51, 67
MseI TTAA 1 cut(s) 205
MspA1I CMGCKG 1 cut(s) 55
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 52
NarI GGCGCC 2 cut(s) 44, 87
NlaIV GGNNCC 2 cut(s) 45, 88
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PkrI GCNGC 3 cut(s) 48, 51, 54
PleI GAGTC 2 cut(s) 22, 89
PluTI GGCGCC 2 cut(s) 47, 90
PpsI GAGTC 2 cut(s) 22, 89
PspN4I GGNNCC 2 cut(s) 45, 88
PspPI GGNCC 1 cut(s) 60
PvuII CAGCTG 1 cut(s) 55
SalI GTCGAC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 205
SatI GCNGC 3 cut(s) 47, 50, 53
Sau96I GGNCC 1 cut(s) 60
SchI GAGTC 2 cut(s) 23, 89
SetI ASST 5 cut(s) 57, 78, 84, 117, 150
SfcI CTRYAG 1 cut(s) 99
SfoI GGCGCC 2 cut(s) 45, 88
SgeI CNNG 4 cut(s) 20, 22, 32, 128
Sse9I AATT 1 cut(s) 180
SsiI CCGC 2 cut(s) 47, 50
SspDI GGCGCC 2 cut(s) 43, 86
SspMI CTAG 1 cut(s) 116
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 78
TasI AATT 1 cut(s) 180
TauI GCSGC 2 cut(s) 49, 52
Tru1I TTAA 1 cut(s) 205
Tru9I TTAA 1 cut(s) 205
TscAI CASTG 1 cut(s) 73
TseI GCWGC 1 cut(s) 52
TspRI CASTG 1 cut(s) 73
XapI RAATTY 1 cut(s) 180
XmiI GTMKAC 1 cut(s) 78
XspI CTAG 1 cut(s) 116
ZraI GACGTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.