Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004534

Physical Location & Seq

Genomic Coordinates Forward (+)

812835 .. 813821

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1010500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCAAGTATTGAAAAACGTCACGGCGAGCCAATGTACAATGTACACTCGCCTCAGAATCCCAAATGCGAATAACTGCGTCTTCTCCAGCGCTTATGATGGTTCTATTCAGAGGGCCCCAAACAGCTCTGTTAATTCTTCCCTGAGGTCCCTTGAGTATCAGAGCCGATTCCCCAACCTGATCTTCGGGGTCACTGGCGATGCGCTTGACGTGAATCGCCGACGTAACGTCCATGAAGGGGTCGGTGGTGATGACGGCGAGTTTATCGCCGACGGAGAAGTCGACAGCCCTCGCCGGCGAGTCAAAATTGAAGGTGAAAAGCTGCTGACCGGTCTGAACGTTCCAGAGCTTGGCGGTCTGATCGGCGCTGCCGGTAATGAGGCGGGCGGAGTCTCTGGACACATCGCAGCACCAGACAGCGCCGTTGTGTCCGCGGTAGGTACCGAGGCGCTCGCCGTTGTCGGCGAACCAGACGGTGGGGTTGTGGTCCTTGGCGCAGGAGAAGAGGAGGTCGCCGTCCCTGTTGTATTTGAGGAAAGTCAAGGGCCTTTCGTGCCCTTTCATCAGGATCGGCCTCATCGTCGGAGTCGGAGAAGGAAGGAATCGACGGAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

21.78

Weight (kDa)

5.29

Isoelectric Point (pI)

67.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004534)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31500 FvH4_3g32320 FvH4_4g00690 FvH4_4g27850 FvH4_7g10870 FvH4_7g10870 FvH4_7g10870
malus_domestica	MD16G1010500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113071 RchiOBHm_Chr7g0220371
rosa_laevigata	RLG00000001298 RLG00000002502 RLG00000028412 RLG00000031890
rosa_multiflora	Rmu_ssc0000390.1_g000001
rosa_roxburghii	Rroxscaffold_153G00436800 Rroxscaffold_153G00436810 Rroxscaffold_1G00031690 Rroxscaffold_2G00104890 Rroxscaffold_2G00148900
rosa_rugosa	Rorug03G0199500 Rorug03G0364300.1 Rorug04G0059300 Rorug05G0361500 Rorug06G0155900
rosa_samantha	Rh1BG179800 Rh2DG595900 Rh3BG075300 Rh4DG164000 Rh6AG040200 Rh7AG433700 Rh7BG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
Acc65I	GGTACC	1 cut(s)	440
AccB1I	GGYRCC	1 cut(s)	440
AccB7I	CCANNNNNTGG	2 cut(s)	350, 476
AccI	GTMKAC	1 cut(s)	282
AccII	CGCG	1 cut(s)	434
AciI	CCGC	5 cut(s)	354, 383, 387, 432, 434
AclI	AACGTT	1 cut(s)	339
AclWI	GGATC	1 cut(s)	576
AfaI	GTAC	3 cut(s)	37, 44, 442
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	3 cut(s)	238, 350, 476
AgeI	ACCGGT	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	13, 311
AhdI	GACNNNNNGTC	1 cut(s)	227
AjiI	CACGTC	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AluBI	AGCT	3 cut(s)	126, 322, 349
AluI	AGCT	3 cut(s)	126, 322, 349
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	1 cut(s)	576
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	3 cut(s)	114, 545, 572
ApaI	GGGCCC	1 cut(s)	118
ApeKI	GCWGC	3 cut(s)	322, 368, 407
AsiGI	ACCGGT	1 cut(s)	329
Asp718I	GGTACC	1 cut(s)	440
AspLEI	GCGC	6 cut(s)	92, 205, 368, 422, 451, 497
AspS9I	GGNCC	5 cut(s)	114, 115, 147, 487, 545
AsuHPI	GGTGA	2 cut(s)	260, 326
AvaII	GGWCC	2 cut(s)	147, 487
AxyI	CCTNAGG	1 cut(s)	143
BaeGI	GKGCMC	2 cut(s)	118, 558
BanI	GGYRCC	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	73
BbvI	GCAGC	3 cut(s)	309, 355, 419
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	5 cut(s)	39, 271, 407, 440, 500
BcoDI	GTCTC	1 cut(s)	397
BfoI	RGCGCY	4 cut(s)	93, 369, 423, 452
BisI	GCNGC	3 cut(s)	323, 369, 408
BlsI	GCNGC	3 cut(s)	324, 370, 409
Bme18I	GGWCC	2 cut(s)	147, 487
BmeRI	GACNNNNNGTC	1 cut(s)	227
BmgBI	CACGTC	1 cut(s)	211
BmgT120I	GGNCC	5 cut(s)	114, 115, 147, 487, 545
BmiI	GGNNCC	4 cut(s)	116, 117, 149, 442
BmsI	GCATC	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	73
BpmI	CTGGAG	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	173
BsaJI	CCNNGG	3 cut(s)	432, 444, 490
BsaWI	WCCGGW	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 350, 476
Bse118I	RCCGGY	3 cut(s)	294, 329, 371
Bse1I	ACTGG	1 cut(s)	199
Bse21I	CCTNAGG	1 cut(s)	143
BseDI	CCNNGG	3 cut(s)	432, 444, 490
BseLI	CCNNNNNNNGG	3 cut(s)	238, 350, 476
BseMII	CTCAG	2 cut(s)	67, 134
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	521
BseSI	GKGCMC	2 cut(s)	118, 558
BseXI	GCAGC	3 cut(s)	309, 355, 419
Bsh1236I	CGCG	1 cut(s)	434
BshFI	GGCC	3 cut(s)	116, 547, 574
BshNI	GGYRCC	1 cut(s)	440
BshTI	ACCGGT	1 cut(s)	329
BsiSI	CCGG	3 cut(s)	295, 330, 372
BslFI	GGGAC	2 cut(s)	133, 503
BslI	CCNNNNNNNGG	3 cut(s)	238, 350, 476
BsmAI	GTCTC	1 cut(s)	397
BsmFI	GGGAC	2 cut(s)	133, 503
BsnI	GGCC	3 cut(s)	116, 547, 574
Bsp120I	GGGCCC	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	118, 558
Bsp1407I	TGTACA	2 cut(s)	35, 42
Bsp143I	GATC	3 cut(s)	180, 360, 568
BspACI	CCGC	5 cut(s)	354, 383, 387, 432, 434
BspANI	GGCC	3 cut(s)	116, 547, 574
BspCNI	CTCAG	2 cut(s)	66, 135
BspFNI	CGCG	1 cut(s)	434
BspLI	GGNNCC	4 cut(s)	116, 117, 149, 442
BspPI	GGATC	1 cut(s)	576
BspT107I	GGYRCC	1 cut(s)	440
BsrFI	RCCGGY	3 cut(s)	294, 329, 371
BsrGI	TGTACA	2 cut(s)	35, 42
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	3 cut(s)	294, 329, 371
BssECI	CCNNGG	3 cut(s)	432, 444, 490
BssMI	GATC	3 cut(s)	180, 360, 568
BssT1I	CCWWGG	1 cut(s)	490
Bst4CI	ACNGT	1 cut(s)	476
Bst6I	CTCTTC	1 cut(s)	498
BstAUI	TGTACA	2 cut(s)	35, 42
BstC8I	GCNNGC	4 cut(s)	28, 296, 385, 453
BstDEI	CTNAG	2 cut(s)	53, 143
BstDSI	CCRYGG	1 cut(s)	432
BstFNI	CGCG	1 cut(s)	434
BstH2I	RGCGCY	4 cut(s)	93, 369, 423, 452
BstHHI	GCGC	6 cut(s)	92, 205, 368, 422, 451, 497
BstKTI	GATC	3 cut(s)	183, 363, 571
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	3 cut(s)	180, 360, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	553
BstSLI	GKGCMC	2 cut(s)	118, 558
BstUI	CGCG	1 cut(s)	434
BstV1I	GCAGC	3 cut(s)	309, 355, 419
BstV2I	GAAGAC	1 cut(s)	73
Bsu36I	CCTNAGG	1 cut(s)	143
BsuRI	GGCC	3 cut(s)	116, 547, 574
BtgI	CCRYGG	1 cut(s)	432
BtgZI	GCGATG	2 cut(s)	213, 388
BtrI	CACGTC	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	4 cut(s)	28, 296, 385, 453
CfoI	GCGC	6 cut(s)	92, 205, 368, 422, 451, 497
Cfr10I	RCCGGY	3 cut(s)	294, 329, 371
Cfr13I	GGNCC	5 cut(s)	114, 115, 147, 487, 545
Cfr42I	CCGCGG	1 cut(s)	435
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	3 cut(s)	36, 43, 441
CspAI	ACCGGT	1 cut(s)	329
CviAII	CATG	1 cut(s)	233
CviJI	RGCY	9 cut(s)	30, 116, 126, 165, 288, 322, 349, 547, 574
CviKI_1	RGCY	9 cut(s)	30, 116, 126, 165, 288, 322, 349, 547, 574
CviQI	GTAC	3 cut(s)	36, 43, 441
DdeI	CTNAG	2 cut(s)	53, 143
DpnI	GATC	3 cut(s)	182, 362, 570
DpnII	GATC	3 cut(s)	180, 360, 568
DrdI	GACNNNNNNGTC	1 cut(s)	278
DriI	GACNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	498
Eam1105I	GACNNNNNGTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	498
EciI	GGCGGA	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	490
Eco24I	GRGCYC	1 cut(s)	118
Eco47I	GGWCC	2 cut(s)	147, 487
Eco47III	AGCGCT	1 cut(s)	91
Eco81I	CCTNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	4 cut(s)	114, 115, 147, 545
EcoT14I	CCWWGG	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	490
FaeI	CATG	1 cut(s)	236
FaiI	YATR	2 cut(s)	96, 234
FaqI	GGGAC	2 cut(s)	133, 503
FatI	CATG	1 cut(s)	232
FauI	CCCGC	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	3 cut(s)	323, 369, 408
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	3 cut(s)	323, 369, 408
GlaI	GCGC	6 cut(s)	91, 204, 367, 421, 450, 496
GluI	GCNGC	3 cut(s)	323, 369, 408
GsuI	CTGGAG	1 cut(s)	70
HaeII	RGCGCY	4 cut(s)	93, 369, 423, 452
HaeIII	GGCC	3 cut(s)	116, 547, 574
HapII	CCGG	3 cut(s)	295, 330, 372
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	6 cut(s)	92, 205, 368, 422, 451, 497
Hin1II	CATG	1 cut(s)	236
Hin6I	GCGC	6 cut(s)	90, 203, 366, 420, 449, 495
HinP1I	GCGC	6 cut(s)	90, 203, 366, 420, 449, 495
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	7 cut(s)	57, 168, 214, 300, 390, 586, 602
HpaII	CCGG	3 cut(s)	295, 330, 372
HphI	GGTGA	2 cut(s)	260, 326
Hpy166II	GTNNAC	2 cut(s)	45, 283
Hpy188I	TCNGA	7 cut(s)	56, 111, 162, 336, 360, 585, 591
Hpy188III	TCNNGA	3 cut(s)	344, 396, 566
Hpy8I	GTNNAC	2 cut(s)	45, 283
Hpy99I	CGWCG	4 cut(s)	225, 275, 585, 610
HpyAV	CCTTC	4 cut(s)	230, 305, 588, 592
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4IV	ACGT	5 cut(s)	18, 210, 223, 228, 339
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	553
HpyF3I	CTNAG	2 cut(s)	53, 143
HpySE526I	ACGT	5 cut(s)	18, 210, 223, 228, 339
Hsp92II	CATG	1 cut(s)	236
HspAI	GCGC	6 cut(s)	90, 203, 366, 420, 449, 495
KpnI	GGTACC	1 cut(s)	444
KroI	GCCGGC	1 cut(s)	294
KroNI	GCCGGC	1 cut(s)	296
KspI	CCGCGG	1 cut(s)	435
Kzo9I	GATC	3 cut(s)	180, 360, 568
Lsp1109I	GCAGC	3 cut(s)	309, 355, 419
LweI	GCATC	1 cut(s)	190
MaeII	ACGT	5 cut(s)	18, 210, 223, 228, 339
MaeIII	GTNAC	3 cut(s)	19, 190, 224
MalI	GATC	3 cut(s)	182, 362, 570
MboI	GATC	3 cut(s)	180, 360, 568
MboII	GAAGA	4 cut(s)	73, 129, 175, 515
MhlI	GDGCHC	2 cut(s)	118, 558
MluCI	AATT	3 cut(s)	133, 306, 613
MlyI	GAGTC	3 cut(s)	309, 399, 595
MmeI	TCCRAC	2 cut(s)	563, 569
MreI	CGCCGGCG	1 cut(s)	294
MroNI	GCCGGC	1 cut(s)	294
MseI	TTAA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	3 cut(s)	295, 330, 372
MvnI	CGCG	1 cut(s)	434
MwoI	GCNNNNNNNGC	1 cut(s)	553
NaeI	GCCGGC	1 cut(s)	296
NdeII	GATC	3 cut(s)	180, 360, 568
NgoMIV	GCCGGC	1 cut(s)	294
NlaIII	CATG	1 cut(s)	236
NlaIV	GGNNCC	4 cut(s)	116, 117, 149, 442
NmuCI	GTSAC	2 cut(s)	19, 190
PcsI	WCGNNNNNNNCGW	2 cut(s)	279, 577
PdiI	GCCGGC	1 cut(s)	296
PfeI	GAWTC	4 cut(s)	57, 168, 214, 602
PflMI	CCANNNNNTGG	2 cut(s)	350, 476
PinAI	ACCGGT	1 cut(s)	329
PkrI	GCNGC	3 cut(s)	324, 370, 409
PleI	GAGTC	3 cut(s)	308, 398, 594
PpsI	GAGTC	3 cut(s)	308, 398, 594
PpuMI	RGGWCCY	1 cut(s)	147
Psp1406I	AACGTT	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	147
PspN4I	GGNNCC	4 cut(s)	116, 117, 149, 442
PspOMI	GGGCCC	1 cut(s)	114
PspPI	GGNCC	5 cut(s)	114, 115, 147, 487, 545
PspPPI	RGGWCCY	1 cut(s)	147
RsaI	GTAC	3 cut(s)	37, 44, 442
RsaNI	GTAC	3 cut(s)	36, 43, 441
SacII	CCGCGG	1 cut(s)	435
SalI	GTCGAC	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	3 cut(s)	323, 369, 408
Sau3AI	GATC	3 cut(s)	180, 360, 568
Sau96I	GGNCC	5 cut(s)	114, 115, 147, 487, 545
SchI	GAGTC	3 cut(s)	309, 399, 595
SduI	GDGCHC	2 cut(s)	118, 558
SfaNI	GCATC	1 cut(s)	190
Sfr303I	CCGCGG	1 cut(s)	435
SgrAI	CRCCGGYG	1 cut(s)	294
SgrBI	CCGCGG	1 cut(s)	435
SinI	GGWCC	2 cut(s)	147, 487
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	3 cut(s)	133, 306, 613
SsiI	CCGC	5 cut(s)	354, 383, 387, 432, 434
StyI	CCWWGG	1 cut(s)	490
TaaI	ACNGT	1 cut(s)	476
TaiI	ACGT	5 cut(s)	21, 213, 226, 231, 342
TaqI	TCGA	2 cut(s)	282, 605
TasI	AATT	3 cut(s)	133, 306, 613
TatI	WGTACW	2 cut(s)	35, 42
TfiI	GAWTC	4 cut(s)	57, 168, 214, 602
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	2 cut(s)	19, 190
TseI	GCWGC	3 cut(s)	322, 368, 407
Tsp45I	GTSAC	2 cut(s)	19, 190
TspDTI	ATGAA	2 cut(s)	249, 551
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	199
Van91I	CCANNNNNTGG	2 cut(s)	350, 476
VpaK11BI	GGWCC	2 cut(s)	147, 487
XmiI	GTMKAC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.