Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0004534

Physical Location & Seq

Genomic Coordinates Forward (+)

5910705 .. 5911280

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG075300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGAGGCGTGAGGAGTCTCTGGAGACATCGCAACACCAAACGACGCCACAGCAGCTGAGGGCCTTCATTGTGGAGCTCGACGTCGGCACTGATGGCTCTATAGACTGGAAGGTAGAAAAGGCAAAGCTAGATGATGGACTATCAGATTTAAGTTATTTGTTGGGAGAGCTAAAGGATATGGCCTTTGACAGGGATCTGAAATCGATAGGTGGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0007049 GO:0008150 GO:0009504 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009612 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0022402 GO:0031224 GO:0032506 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051301 GO:0051704 GO:0051707 GO:0061024 GO:0061025 GO:0061640 GO:0071840 GO:0071944 GO:0097305 GO:1901700 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04130 ko04140 ko04721 ko04911 map04130 map04140 map04721 map04911

Pfam Domains

Protein Families

No domains found.

Protein Analysis

72

Amino Acids

8.11

Weight (kDa)

4.53

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004534)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31500 FvH4_3g32320 FvH4_4g00690 FvH4_4g27850 FvH4_7g10870 FvH4_7g10870 FvH4_7g10870
malus_domestica	MD16G1010500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113071 RchiOBHm_Chr7g0220371
rosa_laevigata	RLG00000001298 RLG00000002502 RLG00000028412 RLG00000031890
rosa_multiflora	Rmu_ssc0000390.1_g000001
rosa_roxburghii	Rroxscaffold_153G00436800 Rroxscaffold_153G00436810 Rroxscaffold_1G00031690 Rroxscaffold_2G00104890 Rroxscaffold_2G00148900
rosa_rugosa	Rorug03G0199500 Rorug03G0364300.1 Rorug04G0059300 Rorug05G0361500 Rorug06G0155900
rosa_samantha	Rh1BG179800 Rh2DG595900 Rh3BG075300 Rh4DG164000 Rh6AG040200 Rh7AG433700 Rh7BG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	84
AclWI	GGATC	1 cut(s)	201
AcyI	GRCGYC	2 cut(s)	44, 81
AfiI	CCNNNNNNNGG	1 cut(s)	189
AluBI	AGCT	4 cut(s)	55, 76, 127, 169
AluI	AGCT	4 cut(s)	55, 76, 127, 169
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	17, 21
AlwI	GGATC	1 cut(s)	201
AlwNI	CAGNNNCTG	1 cut(s)	55
AoxI	GGCC	2 cut(s)	60, 180
ApeKI	GCWGC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	78
BbvCI	CCTCAGC	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	2 cut(s)	86, 128
BcoDI	GTCTC	2 cut(s)	17, 21
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	99
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
BmgT120I	GGNCC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	203
BsaHI	GRCGYC	2 cut(s)	44, 81
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	64
BshFI	GGCC	2 cut(s)	62, 182
BshVI	ATCGAT	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	2 cut(s)	17, 21
BsnI	GGCC	2 cut(s)	62, 182
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	193
BspANI	GGCC	2 cut(s)	62, 182
BspCNI	CTCAG	1 cut(s)	48
BspDI	ATCGAT	1 cut(s)	203
BspPI	GGATC	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	110
BssMI	GATC	1 cut(s)	193
BssNI	GRCGYC	2 cut(s)	44, 81
BstACI	GRCGYC	2 cut(s)	44, 81
BstDEI	CTNAG	1 cut(s)	56
BstENI	CCTNNNNNAGG	1 cut(s)	187
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	2 cut(s)	17, 21
BstMBI	GATC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 93
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
Bsu15I	ATCGAT	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	62, 182
BsuTUI	ATCGAT	1 cut(s)	203
BtgZI	GCGATG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	87
CaiI	CAGNNNCTG	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	60
ClaI	ATCGAT	1 cut(s)	203
CseI	GACGC	1 cut(s)	52
CviJI	RGCY	7 cut(s)	55, 62, 76, 96, 127, 169, 182
CviKI_1	RGCY	7 cut(s)	55, 62, 76, 96, 127, 169, 182
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoNI	CCTNNNNNAGG	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	78
FaiI	YATR	3 cut(s)	101, 179, 217
Fnu4HI	GCNGC	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	62, 182
HgaI	GACGC	1 cut(s)	52
Hin1I	GRCGYC	2 cut(s)	44, 81
HinfI	GANTC	1 cut(s)	14
Hpy188I	TCNGA	2 cut(s)	145, 198
Hpy188III	TCNNGA	1 cut(s)	20
Hpy99I	CGWCG	3 cut(s)	46, 83, 86
HpyAV	CCTTC	2 cut(s)	73, 103
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 93
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	2 cut(s)	44, 81
Kzo9I	GATC	1 cut(s)	193
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	3 cut(s)	5, 91, 175
Lsp1109I	GCAGC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	1 cut(s)	81
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	2 cut(s)	4, 51
MseI	TTAA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	55
MwoI	GCNNNNNNNGC	2 cut(s)	52, 93
NdeII	GATC	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	54
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Psp124BI	GAGCTC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	193
PvuII	CAGCTG	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	1 cut(s)	60
SchI	GAGTC	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	7 cut(s)	57, 78, 84, 114, 129, 171, 211
SfcI	CTRYAG	1 cut(s)	99
SgeI	CNNG	6 cut(s)	20, 32, 89, 118, 140, 202
SspMI	CTAG	1 cut(s)	128
SstI	GAGCTC	1 cut(s)	78
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	78, 203
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	55
TspRI	CASTG	1 cut(s)	94
XagI	CCTNNNNNAGG	1 cut(s)	187
XspI	CTAG	1 cut(s)	128
ZraI	GACGTC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.