Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000153

Orthogroup ID

OG0004534

Physical Location & Seq

Genomic Coordinates Reverse (-)

386864 .. 389383

Gene Structure 2520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_153G00436800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCCGCTGATTTCGAAGCACAACGCCGACCGGAACTGCATCTCTCTCTCTTCTCTTCTCTTCCTTTCTTTTGGGTTGCGAAAAGCTAGGGAAGATGACGATGACGGAGAGCTGAATGGATCTAGCCGGGCATTTGAAATCAAAGGAGAAGAGCTACTTGCCGGTTCGAACATTCCAAAGCTTTGCGGCGTAGTCACCGCTACCCGTCATGAGGCGCGAGAAGTCTCTGGAGACATTGCAACACCAAACAGCTCCGCCGCGGTGAGGGCCTCACCGTGGAGCTCGACATCCGCGCCGATGGCTCCGTTATTTAGAATAGAAAAGGCGAAGCTAGATGATGGACTATCAGATTTGTTGGGAGAGCTAAAGGATATGGCCTTTGACAGGGGTCTAAAATTGATAGAATTCTTCCCCTTTGCATTTGTAGTGGAAGATTTCGAAACTCATGTGAATTTGGATATTGAAGTCTCCATTGGCCAAGAGATCATTCAGTTAACCAAGAAATGTAGAAATGAAGTCTCGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.17

Weight (kDa)

4.93

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004534)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31500 FvH4_3g32320 FvH4_4g00690 FvH4_4g27850 FvH4_7g10870 FvH4_7g10870 FvH4_7g10870
malus_domestica	MD16G1010500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113071 RchiOBHm_Chr7g0220371
rosa_laevigata	RLG00000001298 RLG00000002502 RLG00000028412 RLG00000031890
rosa_multiflora	Rmu_ssc0000390.1_g000001
rosa_roxburghii	Rroxscaffold_153G00436800 Rroxscaffold_153G00436810 Rroxscaffold_1G00031690 Rroxscaffold_2G00104890 Rroxscaffold_2G00148900
rosa_rugosa	Rorug03G0199500 Rorug03G0364300.1 Rorug04G0059300 Rorug05G0361500 Rorug06G0155900
rosa_samantha	Rh1BG179800 Rh2DG595900 Rh3BG075300 Rh4DG164000 Rh6AG040200 Rh7AG433700 Rh7BG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	217, 260, 293
AciI	CCGC	7 cut(s)	5, 186, 198, 255, 258, 260, 291
AclWI	GGATC	1 cut(s)	127
AcoI	YGGCCR	1 cut(s)	475
AcsI	RAATTY	2 cut(s)	404, 451
AfiI	CCNNNNNNNGG	4 cut(s)	211, 264, 276, 384
AgsI	TTSAA	2 cut(s)	137, 464
AjuI	GAANNNNNNNTTGG	4 cut(s)	456, 471, 488, 503
AluBI	AGCT	8 cut(s)	86, 112, 154, 181, 252, 282, 331, 364
AluI	AGCT	8 cut(s)	86, 112, 154, 181, 252, 282, 331, 364
Alw21I	GWGCWC	1 cut(s)	284
Alw26I	GTCTC	4 cut(s)	225, 229, 472, 523
AlwI	GGATC	1 cut(s)	127
AoxI	GGCC	3 cut(s)	267, 375, 475
ApoI	RAATTY	2 cut(s)	404, 451
AspLEI	GCGC	2 cut(s)	217, 295
AspS9I	GGNCC	1 cut(s)	267
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	3 cut(s)	187, 264, 274
AsuII	TTCGAA	3 cut(s)	14, 167, 438
BalI	TGGCCA	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	284
BauI	CACGAG	1 cut(s)	520
Bbv12I	GWGCWC	1 cut(s)	284
BccI	CCATC	2 cut(s)	292, 332
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	4 cut(s)	225, 229, 472, 523
BfaI	CTAG	3 cut(s)	87, 123, 332
BisI	GCNGC	3 cut(s)	5, 187, 258
BlsI	GCNGC	3 cut(s)	6, 188, 259
Bme1390I	CCNGG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	1 cut(s)	48
BoxI	GACNNNNGTC	1 cut(s)	387
BpmI	CTGGAG	1 cut(s)	249
Bpu14I	TTCGAA	3 cut(s)	14, 167, 438
BpuMI	CCSGG	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	258, 275
BsaWI	WCCGGW	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	4 cut(s)	211, 264, 276, 384
Bse118I	RCCGGY	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	258, 275
BseGI	GGATG	1 cut(s)	287
BseLI	CCNNNNNNNGG	4 cut(s)	211, 264, 276, 384
BseMI	GCAATG	1 cut(s)	234
Bsh1236I	CGCG	3 cut(s)	217, 260, 293
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	3 cut(s)	269, 377, 477
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	284
BsiSI	CCGG	3 cut(s)	31, 127, 162
BslI	CCNNNNNNNGG	4 cut(s)	211, 264, 276, 384
BsmAI	GTCTC	4 cut(s)	225, 229, 472, 523
BsnI	GGCC	3 cut(s)	269, 377, 477
Bsp119I	TTCGAA	3 cut(s)	14, 167, 438
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	2 cut(s)	119, 483
BspACI	CCGC	7 cut(s)	5, 186, 198, 255, 258, 260, 291
BspANI	GGCC	3 cut(s)	269, 377, 477
BspFNI	CGCG	3 cut(s)	217, 260, 293
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	127
BspQI	GCTCTTC	1 cut(s)	144
BspT104I	TTCGAA	3 cut(s)	14, 167, 438
BsrDI	GCAATG	1 cut(s)	234
BsrFI	RCCGGY	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	258, 275
BssMI	GATC	2 cut(s)	119, 483
BssSI	CACGAG	1 cut(s)	520
Bst2BI	CACGAG	1 cut(s)	520
Bst4CI	ACNGT	1 cut(s)	276
Bst6I	CTCTTC	4 cut(s)	55, 60, 65, 144
BstBI	TTCGAA	3 cut(s)	14, 167, 438
BstDSI	CCRYGG	2 cut(s)	258, 275
BstENI	CCTNNNNNAGG	1 cut(s)	382
BstF5I	GGATG	1 cut(s)	287
BstFNI	CGCG	3 cut(s)	217, 260, 293
BstHHI	GCGC	2 cut(s)	217, 295
BstKTI	GATC	2 cut(s)	122, 486
BstMAI	GTCTC	4 cut(s)	225, 229, 472, 523
BstMBI	GATC	2 cut(s)	119, 483
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 299
BstPAI	GACNNNNGTC	1 cut(s)	387
BstSCI	CCNGG	1 cut(s)	126
BstUI	CGCG	3 cut(s)	217, 260, 293
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	269, 377, 477
BtgI	CCRYGG	2 cut(s)	258, 275
BtsCI	GGATG	1 cut(s)	287
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	2 cut(s)	217, 295
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	267
Cfr42I	CCGCGG	1 cut(s)	261
CviAII	CATG	2 cut(s)	209, 446
DpnI	GATC	2 cut(s)	121, 485
DpnII	GATC	2 cut(s)	119, 483
EaeI	YGGCCR	1 cut(s)	475
Eam1104I	CTCTTC	4 cut(s)	55, 60, 65, 144
EarI	CTCTTC	4 cut(s)	55, 60, 65, 144
EciI	GGCGGA	1 cut(s)	244
Ecl136II	GAGCTC	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	282
EcoNI	CCTNNNNNAGG	1 cut(s)	382
EcoO109I	RGGNCCY	1 cut(s)	267
EcoRI	GAATTC	1 cut(s)	404
EcoT38I	GRGCYC	1 cut(s)	284
FaeI	CATG	2 cut(s)	212, 449
FaiI	YATR	3 cut(s)	210, 374, 447
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FatI	CATG	2 cut(s)	208, 445
Fnu4HI	GCNGC	3 cut(s)	5, 187, 258
FokI	GGATG	1 cut(s)	274
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	3 cut(s)	5, 187, 258
FspBI	CTAG	3 cut(s)	87, 123, 332
GlaI	GCGC	2 cut(s)	216, 294
GluI	GCNGC	3 cut(s)	5, 187, 258
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	3 cut(s)	269, 377, 477
HapII	CCGG	3 cut(s)	31, 127, 162
HhaI	GCGC	2 cut(s)	217, 295
Hin1II	CATG	2 cut(s)	212, 449
Hin6I	GCGC	2 cut(s)	215, 293
HinP1I	GCGC	2 cut(s)	215, 293
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HindIII	AAGCTT	1 cut(s)	179
HpaI	GTTAAC	1 cut(s)	495
HpaII	CCGG	3 cut(s)	31, 127, 162
HphI	GGTGA	3 cut(s)	187, 264, 274
Hpy166II	GTNNAC	1 cut(s)	495
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	2 cut(s)	209, 228
Hpy8I	GTNNAC	1 cut(s)	495
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4V	TGCA	3 cut(s)	39, 239, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 299
Hsp92II	CATG	2 cut(s)	212, 449
HspAI	GCGC	2 cut(s)	215, 293
KspAI	GTTAAC	1 cut(s)	495
KspI	CCGCGG	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	119, 483
LguI	GCTCTTC	1 cut(s)	144
LmnI	GCTCC	3 cut(s)	257, 279, 307
LpnPI	CCDG	5 cut(s)	44, 140, 175, 213, 370
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	3 cut(s)	87, 123, 332
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	2 cut(s)	121, 485
MboI	GATC	2 cut(s)	119, 483
MboII	GAAGA	7 cut(s)	42, 47, 52, 104, 161, 400, 443
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	284
MlsI	TGGCCA	1 cut(s)	477
MluCI	AATT	3 cut(s)	395, 404, 451
MluNI	TGGCCA	1 cut(s)	477
MnlI	CCTC	3 cut(s)	205, 258, 280
Mox20I	TGGCCA	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	1 cut(s)	494
Msp20I	TGGCCA	1 cut(s)	477
MspA1I	CMGCKG	2 cut(s)	7, 260
MspI	CCGG	3 cut(s)	31, 127, 162
MspR9I	CCNGG	1 cut(s)	128
MvnI	CGCG	3 cut(s)	217, 260, 293
MwoI	GCNNNNNNNGC	2 cut(s)	266, 299
NciI	CCSGG	1 cut(s)	128
NdeII	GATC	2 cut(s)	119, 483
NlaIII	CATG	2 cut(s)	212, 449
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	193
NspV	TTCGAA	3 cut(s)	14, 167, 438
PagI	TCATGA	1 cut(s)	208
PciSI	GCTCTTC	1 cut(s)	144
PkrI	GCNGC	3 cut(s)	6, 188, 259
PshAI	GACNNNNGTC	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	267
PsuI	RGATCY	1 cut(s)	119
SacI	GAGCTC	1 cut(s)	284
SacII	CCGCGG	1 cut(s)	261
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	3 cut(s)	5, 187, 258
Sau3AI	GATC	2 cut(s)	119, 483
Sau96I	GGNCC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	8 cut(s)	88, 114, 156, 183, 254, 284, 333, 366
SfaNI	GCATC	1 cut(s)	48
Sfr303I	CCGCGG	1 cut(s)	261
SfuI	TTCGAA	3 cut(s)	14, 167, 438
SgrBI	CCGCGG	1 cut(s)	261
Sse9I	AATT	3 cut(s)	395, 404, 451
SsiI	CCGC	7 cut(s)	5, 186, 198, 255, 258, 260, 291
SspMI	CTAG	3 cut(s)	87, 123, 332
SstI	GAGCTC	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	276
TaqI	TCGA	4 cut(s)	14, 167, 284, 438
TasI	AATT	3 cut(s)	395, 404, 451
TauI	GCSGC	3 cut(s)	7, 189, 260
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	528
TspGWI	ACGGA	2 cut(s)	120, 294
XagI	CCTNNNNNAGG	1 cut(s)	382
XapI	RAATTY	2 cut(s)	404, 451
XspI	CTAG	3 cut(s)	87, 123, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.