FvH4_3g36920

Ribulose bisphosphate carboxylase oxygenase activase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
31606182 .. 31608852
2671 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36920.t1

Sequence Viewer

Length: 1431 bp
ATGGCTTCCACAGTCTCAACTGTTGGAGCTGTTAACAGAACACCCTTGAGCTTGAACAGCTCTGGTGCTGGAAGCTCAATCCCAAGCTCAGCTTTCTTGGGCAGCAGTTTGAAGAAGGTCAACAACACAAGACTCTCCTACCAAAAAACTGTATCTGCAGGTAACTTGAGAATCACAGCAGAAATCGATGAGACAAAGCAGTCGAAAACAGACAAGTGGAAAGGCCTAGCTTATGACATTTCTGATGACCAACAAGACATTACAAGAGGAAAGGGAATGGTTGATACTGTGTTCCAAGCTCCCAGTGGAACTGGGACTCACAATCCCATCATGAGCTCTTACGATTACGTCAGCACTGGACTTCGAACGTACAACTTGGATAACAACATGGATGGGTTTTACATAGCTCCAGCTTTCATGGACAAGCTTGTGGTTCATATCACCAAGAACTTCATGAGCCTGCCTAACATTAAGATTCCCCTCATTCTTGGTATATGGGGAGGAAAAGGTCAGGGAAAATCATTCCAGTGTGAGCTTGTGTTTGCCAAGATGGGAATTACCCCCATCATGATGAGTGCTGGAGAATTAGAAAGTGGGAATGCAGGAGAACCAGCAAAGTTGATCAGACAAAGATATCGTGAGGCTTCAGACATCATCCGAAAAGGAAAAATGTGTGCCCTCTTCATCAACGATCTAGATGCAGGTGCTGGTAGGATGGGTGGAACCACACAGTACACTGTGAATAACCAGATGGTCAACGCAACCCTCATGAACATTGCTGATAACCCAACAAATGTGCAGCTCCCCGGTATGTACAACAAGGAGGACAATGCTAGAGTGCCGATTATAGTCACTGGTAATGACTTCTCTACATTGTATGCGCCTCTTATCCGTGATGGTCGTATGGAGAAGTTTTATTGGGCTCCCACAAGGGAAGACAGGATTGGTGTTTGCATCGGAATCTTCAAGACTGATAATATTCCTGAGGAGGATGTTGTTAAGATTGTAGACACATTCCCTGGTCAATCTATTGATTTCTTTGGTGCCCTTCGAGCTCGAGTCTACGATGATGAAGTGAGGAAGTGGATATCTGGTGTTGGAGTAGACGGCATTGGGAAGAAGCTTGTGAACTCAAAAGAAGGTCTCCCAACTTTTGAGCAGCCTAAGATGACACTGGAGAAGCTTCTTGGGTATGGTAACATGCTTGTTCAAGAGCAGGACAATGTCAAGAGAGTTCAACTTGCTGAGACTTACTTGAGTCAAGCAGCACTTGGAGATGCAAACCAGGATTCTATCAAGAGAGGAGATTTCTATGGCCAGGCAGCCCAACAAGTTCATGTACCAGTTCCTGAAGGATGTACTGATCGAACAGCCTCAAACTTCGACCCAACAGCTAGGAGTGACGATGGTAGCTGCGAATACCAACTATAA
Functional Annotation

Protein Analysis

477

Amino Acids

52.07

Weight (kDa)

5.84

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 165 - 308 1.3e-16 ATPase family associated with various cellular activities (AAA)
RuBisCO_activase_AAA_helical PF21228 311 - 406 9.1e-40 Ribulose bisphosphate carboxylase/oxygenase activase, AAA, helical
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 692
AasI GACNNNNNNGTC 1 cut(s) 199
Acc36I ACCTGC 2 cut(s) 149, 692
AccB1I GGYRCC 1 cut(s) 1043
AccI GTMKAC 3 cut(s) 1008, 1062, 1104
AcoI YGGCCR 1 cut(s) 1315
AcuI CTGAAG 2 cut(s) 630, 1371
AfaI GTAC 5 cut(s) 371, 734, 815, 1341, 1360
AgsI TTSAA 5 cut(s) 55, 112, 967, 1211, 1238
AjnI CCWGG 3 cut(s) 1018, 1284, 1317
AjuI GAANNNNNNNTTGG 2 cut(s) 927, 959
Alw21I GWGCWC 2 cut(s) 338, 1057
Alw26I GTCTC 4 cut(s) 19, 185, 1148, 1241
AlwNI CAGNNNCTG 2 cut(s) 707, 1349
Ama87I CYCGRG 1 cut(s) 1056
AoxI GGCC 2 cut(s) 223, 1315
ApeKI GCWGC 6 cut(s) 102, 799, 1159, 1265, 1322, 1413
AspLEI GCGC 1 cut(s) 883
AsuC2I CCSGG 1 cut(s) 807
AsuHPI GGTGA 1 cut(s) 433
AsuII TTCGAA 1 cut(s) 364
AvaI CYCGRG 1 cut(s) 1056
AxyI CCTNAGG 1 cut(s) 984
BaeGI GKGCMC 2 cut(s) 679, 1048
BalI TGGCCA 1 cut(s) 1317
BanI GGYRCC 1 cut(s) 1043
BanII GRGCYC 3 cut(s) 338, 925, 1057
BbsI GAAGAC 1 cut(s) 942
Bbv12I GWGCWC 2 cut(s) 338, 1057
BbvI GCAGC 6 cut(s) 114, 811, 1171, 1277, 1334, 1400
BccI CCATC 8 cut(s) 335, 386, 544, 572, 709, 745, 890, 1400
BceAI ACGGC 1 cut(s) 1123
BcgI CGANNNNNNTGC 2 cut(s) 680, 714
BciT130I CCWGG 3 cut(s) 1020, 1286, 1319
BclI TGATCA 1 cut(s) 621
BcnI CCSGG 1 cut(s) 807
BcoDI GTCTC 4 cut(s) 19, 185, 1148, 1241
BfaI CTAG 4 cut(s) 227, 695, 834, 1395
BfmI CTRYAG 1 cut(s) 156
BfuAI ACCTGC 2 cut(s) 149, 692
BisI GCNGC 6 cut(s) 103, 800, 1160, 1266, 1323, 1414
BlpI GCTNAGC 1 cut(s) 88
BlsI GCNGC 6 cut(s) 104, 801, 1161, 1267, 1324, 1415
Bme1390I CCNGG 4 cut(s) 807, 1020, 1286, 1319
BmeT110I CYCGRG 1 cut(s) 1056
BmiI GGNNCC 3 cut(s) 724, 924, 1045
BmrFI CCNGG 4 cut(s) 807, 1020, 1286, 1319
BmrI ACTGGG 2 cut(s) 297, 321
BmsI GCATC 3 cut(s) 688, 963, 1267
BmuI ACTGGG 2 cut(s) 297, 321
BpiI GAAGAC 1 cut(s) 942
BpmI CTGGAG 3 cut(s) 393, 600, 1196
Bpu1102I GCTNAGC 1 cut(s) 88
Bpu14I TTCGAA 1 cut(s) 364
BpuEI CTTGAG 3 cut(s) 67, 187, 1276
BpuMI CCSGG 1 cut(s) 807
Bsa29I ATCGAT 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 1148
BsaJI CCNNGG 2 cut(s) 805, 1018
Bse1I ACTGG 7 cut(s) 303, 316, 361, 526, 859, 1179, 1343
Bse21I CCTNAGG 1 cut(s) 984
Bse3DI GCAATG 1 cut(s) 774
BseBI CCWGG 3 cut(s) 1020, 1286, 1319
BseCI ATCGAT 1 cut(s) 186
BseDI CCNNGG 2 cut(s) 805, 1018
BseGI GGATG 5 cut(s) 397, 654, 720, 997, 1361
BseMI GCAATG 1 cut(s) 774
BseMII CTCAG 3 cut(s) 102, 975, 1236
BseNI ACTGG 7 cut(s) 303, 316, 361, 526, 859, 1179, 1343
BseRI GAGGAG 2 cut(s) 1001, 1317
BseSI GKGCMC 2 cut(s) 679, 1048
BseXI GCAGC 6 cut(s) 114, 811, 1171, 1277, 1334, 1400
BsgI GTGCAG 1 cut(s) 818
BshFI GGCC 2 cut(s) 225, 1317
BshNI GGYRCC 1 cut(s) 1043
BshVI ATCGAT 1 cut(s) 186
BsiHKAI GWGCWC 2 cut(s) 338, 1057
BsiHKCI CYCGRG 1 cut(s) 1056
BsiSI CCGG 1 cut(s) 807
BslFI GGGAC 1 cut(s) 328
BsmAI GTCTC 4 cut(s) 19, 185, 1148, 1241
BsmFI GGGAC 1 cut(s) 328
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 2 cut(s) 225, 1317
Bso31I GGTCTC 1 cut(s) 1148
BsoBI CYCGRG 1 cut(s) 1056
Bsp119I TTCGAA 1 cut(s) 364
Bsp1286I GDGCHC 5 cut(s) 338, 679, 925, 1048, 1057
Bsp1407I TGTACA 1 cut(s) 813
Bsp143I GATC 3 cut(s) 621, 691, 1363
Bsp1720I GCTNAGC 1 cut(s) 88
BspANI GGCC 2 cut(s) 225, 1317
BspCNI CTCAG 3 cut(s) 101, 976, 1237
BspDI ATCGAT 1 cut(s) 186
BspHI TCATGA 4 cut(s) 330, 453, 567, 768
BspLI GGNNCC 3 cut(s) 724, 924, 1045
BspMAI CTGCAG 1 cut(s) 160
BspMI ACCTGC 2 cut(s) 149, 692
BspT104I TTCGAA 1 cut(s) 364
BspT107I GGYRCC 1 cut(s) 1043
BspTNI GGTCTC 1 cut(s) 1148
BsrDI GCAATG 1 cut(s) 774
BsrGI TGTACA 1 cut(s) 813
BsrI ACTGG 7 cut(s) 303, 316, 361, 526, 859, 1179, 1343
BssECI CCNNGG 2 cut(s) 805, 1018
BssMI GATC 3 cut(s) 621, 691, 1363
Bst2UI CCWGG 3 cut(s) 1020, 1286, 1319
Bst4CI ACNGT 6 cut(s) 13, 22, 151, 289, 732, 739
Bst6I CTCTTC 1 cut(s) 686
BstAUI TGTACA 1 cut(s) 813
BstBI TTCGAA 1 cut(s) 364
BstC8I GCNNGC 1 cut(s) 461
BstDEI CTNAG 4 cut(s) 88, 984, 1164, 1245
BstF5I GGATG 5 cut(s) 397, 654, 720, 997, 1361
BstHHI GCGC 1 cut(s) 883
BstKTI GATC 3 cut(s) 624, 694, 1366
BstMAI GTCTC 4 cut(s) 19, 185, 1148, 1241
BstMBI GATC 3 cut(s) 621, 691, 1363
BstMWI GCNNNNNNNGC 2 cut(s) 57, 1052
BstNI CCWGG 3 cut(s) 1020, 1286, 1319
BstNSI RCATGY 1 cut(s) 1204
BstSCI CCNGG 4 cut(s) 805, 1018, 1284, 1317
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 2 cut(s) 679, 1048
BstV1I GCAGC 6 cut(s) 114, 811, 1171, 1277, 1334, 1400
BstV2I GAAGAC 1 cut(s) 942
Bsu15I ATCGAT 1 cut(s) 186
Bsu36I CCTNAGG 1 cut(s) 984
BsuRI GGCC 2 cut(s) 225, 1317
BsuTUI ATCGAT 1 cut(s) 186
BtsCI GGATG 5 cut(s) 397, 654, 720, 997, 1361
BtsIMutI CAGTG 6 cut(s) 310, 354, 533, 735, 852, 1172
BveI ACCTGC 2 cut(s) 149, 692
Cac8I GCNNGC 1 cut(s) 461
CaiI CAGNNNCTG 2 cut(s) 707, 1349
CciI TCATGA 4 cut(s) 330, 453, 567, 768
CfoI GCGC 1 cut(s) 883
ClaI ATCGAT 1 cut(s) 186
Csp6I GTAC 5 cut(s) 370, 733, 814, 1340, 1359
CviAII CATG 8 cut(s) 331, 388, 418, 454, 568, 769, 1201, 1337
CviQI GTAC 5 cut(s) 370, 733, 814, 1340, 1359
DdeI CTNAG 4 cut(s) 88, 984, 1164, 1245
DpnI GATC 3 cut(s) 623, 693, 1365
DpnII GATC 3 cut(s) 621, 691, 1363
DrdI GACNNNNNNGTC 1 cut(s) 199
DseDI GACNNNNNNGTC 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 1315
Eam1104I CTCTTC 1 cut(s) 686
EarI CTCTTC 1 cut(s) 686
Ecl136II GAGCTC 2 cut(s) 336, 1055
Eco147I AGGCCT 1 cut(s) 225
Eco24I GRGCYC 3 cut(s) 338, 925, 1057
Eco31I GGTCTC 1 cut(s) 1148
Eco32I GATATC 2 cut(s) 635, 1089
Eco53kI GAGCTC 2 cut(s) 336, 1055
Eco57I CTGAAG 2 cut(s) 630, 1371
Eco81I CCTNAGG 1 cut(s) 984
Eco88I CYCGRG 1 cut(s) 1056
EcoICRI GAGCTC 2 cut(s) 336, 1055
EcoRII CCWGG 3 cut(s) 1018, 1284, 1317
EcoRV GATATC 2 cut(s) 635, 1089
EcoT38I GRGCYC 3 cut(s) 338, 925, 1057
FaeI CATG 8 cut(s) 334, 391, 421, 457, 571, 772, 1204, 1340
FalI AAGNNNNNCTT 4 cut(s) 76, 108, 1254, 1286
FaqI GGGAC 1 cut(s) 328
FatI CATG 8 cut(s) 330, 387, 417, 453, 567, 768, 1200, 1336
FbaI TGATCA 1 cut(s) 621
FblI GTMKAC 3 cut(s) 1008, 1062, 1104
Fnu4HI GCNGC 6 cut(s) 103, 800, 1160, 1266, 1323, 1414
FokI GGATG 5 cut(s) 404, 641, 727, 1004, 1368
FriOI GRGCYC 3 cut(s) 338, 925, 1057
Fsp4HI GCNGC 6 cut(s) 103, 800, 1160, 1266, 1323, 1414
FspBI CTAG 4 cut(s) 227, 695, 834, 1395
GlaI GCGC 1 cut(s) 882
GluI GCNGC 6 cut(s) 103, 800, 1160, 1266, 1323, 1414
GsuI CTGGAG 3 cut(s) 393, 600, 1196
HaeIII GGCC 2 cut(s) 225, 1317
HapII CCGG 1 cut(s) 807
HhaI GCGC 1 cut(s) 883
Hin1II CATG 8 cut(s) 334, 391, 421, 457, 571, 772, 1204, 1340
Hin6I GCGC 1 cut(s) 881
HinP1I GCGC 1 cut(s) 881
HincII GTYRAC 3 cut(s) 34, 121, 757
HindII GTYRAC 3 cut(s) 34, 121, 757
HindIII AAGCTT 3 cut(s) 425, 1121, 1181
HinfI GANTC 8 cut(s) 132, 171, 316, 475, 960, 1059, 1258, 1289
HpaI GTTAAC 1 cut(s) 34
HpaII CCGG 1 cut(s) 807
HphI GGTGA 1 cut(s) 433
Hpy166II GTNNAC 8 cut(s) 34, 121, 735, 757, 1009, 1063, 1105, 1129
Hpy188I TCNGA 5 cut(s) 244, 626, 649, 659, 959
Hpy8I GTNNAC 8 cut(s) 34, 121, 735, 757, 1009, 1063, 1105, 1129
HpyAV CCTTC 4 cut(s) 109, 1058, 1133, 1346
HpyCH4III ACNGT 6 cut(s) 13, 22, 151, 289, 732, 739
HpyCH4IV ACGT 2 cut(s) 348, 368
HpyCH4V TGCA 6 cut(s) 158, 602, 701, 799, 954, 1280
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 1052
HpyF3I CTNAG 4 cut(s) 88, 984, 1164, 1245
HpySE526I ACGT 2 cut(s) 348, 368
Hsp92II CATG 8 cut(s) 334, 391, 421, 457, 571, 772, 1204, 1340
HspAI GCGC 1 cut(s) 881
Ksp22I TGATCA 1 cut(s) 621
KspAI GTTAAC 1 cut(s) 34
Kzo9I GATC 3 cut(s) 621, 691, 1363
LmnI GCTCC 5 cut(s) 26, 304, 412, 807, 928
Lsp1109I GCAGC 6 cut(s) 114, 811, 1171, 1277, 1334, 1400
LweI GCATC 3 cut(s) 688, 963, 1267
MaeI CTAG 4 cut(s) 227, 695, 834, 1395
MaeII ACGT 2 cut(s) 348, 368
MaeIII GTNAC 4 cut(s) 161, 850, 1196, 1400
MalI GATC 3 cut(s) 623, 693, 1365
MboI GATC 3 cut(s) 621, 691, 1363
MboII GAAGA 5 cut(s) 124, 673, 947, 955, 1129
MhlI GDGCHC 5 cut(s) 338, 679, 925, 1048, 1057
MlsI TGGCCA 1 cut(s) 1317
MluCI AATT 2 cut(s) 555, 584
MluNI TGGCCA 1 cut(s) 1317
MlyI GAGTC 4 cut(s) 126, 310, 1068, 1267
MmeI TCCRAC 2 cut(s) 4, 1078
Mox20I TGGCCA 1 cut(s) 1317
MscI TGGCCA 1 cut(s) 1317
MseI TTAA 3 cut(s) 33, 471, 999
MslI CAYNNNNRTG 2 cut(s) 526, 569
Msp20I TGGCCA 1 cut(s) 1317
MspI CCGG 1 cut(s) 807
MspR9I CCNGG 4 cut(s) 807, 1020, 1286, 1319
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 3 cut(s) 1020, 1286, 1319
MwoI GCNNNNNNNGC 2 cut(s) 57, 1052
NciI CCSGG 1 cut(s) 807
NdeII GATC 3 cut(s) 621, 691, 1363
NlaIII CATG 8 cut(s) 334, 391, 421, 457, 571, 772, 1204, 1340
NlaIV GGNNCC 3 cut(s) 724, 924, 1045
NmuCI GTSAC 2 cut(s) 850, 1400
NspI RCATGY 1 cut(s) 1204
NspV TTCGAA 1 cut(s) 364
PaeR7I CTCGAG 1 cut(s) 1056
PagI TCATGA 4 cut(s) 330, 453, 567, 768
PaqCI CACCTGC 1 cut(s) 692
PceI AGGCCT 1 cut(s) 225
PctI GAATGC 1 cut(s) 604
PfeI GAWTC 4 cut(s) 171, 475, 960, 1289
PflFI GACNNNGTC 1 cut(s) 1223
PkrI GCNGC 6 cut(s) 104, 801, 1161, 1267, 1324, 1415
PleI GAGTC 4 cut(s) 126, 310, 1067, 1266
PpsI GAGTC 4 cut(s) 126, 310, 1067, 1266
Psp124BI GAGCTC 2 cut(s) 338, 1057
Psp6I CCWGG 3 cut(s) 1018, 1284, 1317
PspGI CCWGG 3 cut(s) 1018, 1284, 1317
PspN4I GGNNCC 3 cut(s) 724, 924, 1045
PspXI VCTCGAGB 1 cut(s) 1056
PstI CTGCAG 1 cut(s) 160
PstNI CAGNNNCTG 2 cut(s) 707, 1349
PsyI GACNNNGTC 1 cut(s) 1223
RsaI GTAC 5 cut(s) 371, 734, 815, 1341, 1360
RsaNI GTAC 5 cut(s) 370, 733, 814, 1340, 1359
RseI CAYNNNNRTG 2 cut(s) 526, 569
SacI GAGCTC 2 cut(s) 338, 1057
SaqAI TTAA 3 cut(s) 33, 471, 999
SatI GCNGC 6 cut(s) 103, 800, 1160, 1266, 1323, 1414
Sau3AI GATC 3 cut(s) 621, 691, 1363
SchI GAGTC 4 cut(s) 126, 310, 1068, 1267
ScrFI CCNGG 4 cut(s) 807, 1020, 1286, 1319
SduI GDGCHC 5 cut(s) 338, 679, 925, 1048, 1057
SfaNI GCATC 3 cut(s) 688, 963, 1267
SfcI CTRYAG 1 cut(s) 156
Sfr274I CTCGAG 1 cut(s) 1056
SfuI TTCGAA 1 cut(s) 364
SlaI CTCGAG 1 cut(s) 1056
SmiMI CAYNNNNRTG 2 cut(s) 526, 569
SmlI CTYRAG 4 cut(s) 46, 166, 1056, 1255
SmoI CTYRAG 4 cut(s) 46, 166, 1056, 1255
Sse9I AATT 2 cut(s) 555, 584
SseBI AGGCCT 1 cut(s) 225
SspI AATATT 1 cut(s) 979
SspMI CTAG 4 cut(s) 227, 695, 834, 1395
SstI GAGCTC 2 cut(s) 338, 1057
StuI AGGCCT 1 cut(s) 225
StyD4I CCNGG 4 cut(s) 805, 1018, 1284, 1317
TaaI ACNGT 6 cut(s) 13, 22, 151, 289, 732, 739
TaiI ACGT 2 cut(s) 351, 371
TaqI TCGA 7 cut(s) 186, 203, 364, 1051, 1057, 1366, 1383
TasI AATT 2 cut(s) 555, 584
TatI WGTACW 3 cut(s) 732, 813, 1358
TfiI GAWTC 4 cut(s) 171, 475, 960, 1289
Tru1I TTAA 3 cut(s) 33, 471, 999
Tru9I TTAA 3 cut(s) 33, 471, 999
TscAI CASTG 6 cut(s) 310, 361, 533, 742, 859, 1179
TseFI GTSAC 2 cut(s) 850, 1400
TseI GCWGC 6 cut(s) 102, 799, 1159, 1265, 1322, 1413
Tsp45I GTSAC 2 cut(s) 850, 1400
TspDTI ATGAA 7 cut(s) 406, 425, 442, 673, 785, 1086, 1325
TspGWI ACGGA 1 cut(s) 881
TspRI CASTG 6 cut(s) 310, 361, 533, 742, 859, 1179
Tth111I GACNNNGTC 1 cut(s) 1223
XbaI TCTAGA 1 cut(s) 694
XceI RCATGY 1 cut(s) 1204
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XhoI CTCGAG 1 cut(s) 1056
XmiI GTMKAC 3 cut(s) 1008, 1062, 1104
XspI CTAG 4 cut(s) 227, 695, 834, 1395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.