Rh1DG340300

Ribulose bisphosphate carboxylase oxygenase activase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
56561422 .. 56564909
3488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG340300.1

Sequence Viewer

Length: 1221 bp
ATGGGAAGCAGCTTGAAGAAAGTGAACTCAAGGTTCCCCAACTCCAAAGTCTCATCCGGGAGCTTCAAGATTGTAGCAGAGGCAGTCGATGAAGACAAGCAGACCGAAAAGGACAAATGGAAAGGCCTTGCATTTGACACCTCCGATGACCAACAAGACATCACCAGAGGAAAGGGTATGGTTGATACCCTCTTCCAAGCTCCAATGGGCGACGGAACTCACATGGCCATCATGAGTTCTTATGACTATGTCAGCGCTGGACTTCGCACGTACGACATGGACAACATGAAGGATGGTTTATACATTGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACAAAGAACTTCATGAGCTTGCCTAACATCAAGGTTCCCCTTATCCTTGGTATTTGGGGAGGCAAGGGTCAGGGTAAATCTTTCCAGTGTGAGCTTGTGTTTGCTAAGATGGGAATCAACCCTATCATGATGAGTGCCGGAGAATTGGAAAGTGGAAACGCTGGAGAACCCGCAAAGTTGATCAGGCAAAGGTACCGTGAGGCAGCCGATATCATCAGGAAGGGGAAAATGTGCGCCCTCTTCATCAACGATCTTGATGCAGGAGCTGGTCGTATGGGTGGAACCACCCAATACACTGTGAACAACCAGATGGTTAACGCCACCCTCATGAACATTGCTGATAACCCAACCAATGTCCAGCTCCCCGGTATGTACAACAAGGAGGAGAACCCCCGTGTCCCCATCATTGTCACCGGTAACGATTTCTCAACATTGTATGCTCCTCTCATCCGTGATGGGCGTATGGAGAAGTTCTACTGGGCTCCTACAAGAGAAGATCGTATTGGTGTCTGCACTGGTATCTTCAAAGCTGACAATGTTGCCCAATCCGATATTGTCAAGCTAGTTGACACCTTCCCCGGCCAATCCATCGATTTCTTTGGTGCCCTTAGGGCCAGAGTTTACGATGATGAAGTGAGGAAGTGGATTTCCGGTGTTGGTGTGGACGGCGTTGGAAAGAAGCTTGTGAACTCGAAGGAAGGACCCCCGACTTTCGAGCAGCCCAAGATGACAATTGAGAAGCTCCTTGAGTACGGAAACATGCTTGTGCAAGAGCAAGAGAATGTGAAGAGAGTCCAATTGGCCGACCAGTACTTGAACGAGGCTGCTCTTGGTGATGCCAACTCTGATGCCATTGATAGAGGAACTTTCTACGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

406

Amino Acids

44.84

Weight (kDa)

5.53

Isoelectric Point (pI)

28.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 132 - 275 6.5e-17 ATPase family associated with various cellular activities (AAA)
RuBisCO_activase_AAA_helical PF21228 278 - 373 3.8e-41 Ribulose bisphosphate carboxylase/oxygenase activase, AAA, helical
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 534
AccB1I GGYRCC 2 cut(s) 534, 944
AciI CCGC 1 cut(s) 513
AcoI YGGCCR 3 cut(s) 225, 922, 1143
AfaI GTAC 5 cut(s) 272, 536, 716, 1094, 1154
AfeI AGCGCT 1 cut(s) 256
AgeI ACCGGT 1 cut(s) 755
AgsI TTSAA 4 cut(s) 16, 67, 868, 1159
AjuI GAANNNNNNNTTGG 2 cut(s) 828, 860
Alw26I GTCTC 1 cut(s) 55
AlwNI CAGNNNCTG 1 cut(s) 608
Aor51HI AGCGCT 1 cut(s) 256
AoxI GGCC 5 cut(s) 124, 225, 922, 954, 1143
ApeKI GCWGC 4 cut(s) 9, 545, 1060, 1166
AsiGI ACCGGT 1 cut(s) 755
Asp718I GGTACC 1 cut(s) 534
AspLEI GCGC 2 cut(s) 257, 578
AspS9I GGNCC 2 cut(s) 954, 1043
AsuC2I CCSGG 3 cut(s) 58, 708, 921
AsuHPI GGTGA 3 cut(s) 154, 745, 1187
AvaII GGWCC 1 cut(s) 1043
AxyI CCTNAGG 1 cut(s) 950
BaeGI GKGCMC 1 cut(s) 949
BalI TGGCCA 1 cut(s) 227
BanI GGYRCC 2 cut(s) 534, 944
BanII GRGCYC 1 cut(s) 826
BbsI GAAGAC 1 cut(s) 99
BbvI GCAGC 4 cut(s) 21, 557, 1072, 1153
BccI CCATC 7 cut(s) 236, 287, 445, 646, 752, 791, 938
BceAI ACGGC 1 cut(s) 1024
BcgI CGANNNNNNTGC 2 cut(s) 581, 615
BclI TGATCA 1 cut(s) 522
BcnI CCSGG 3 cut(s) 58, 708, 921
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 1 cut(s) 905
BfoI RGCGCY 1 cut(s) 258
BglI GCCNNNNNGGC 1 cut(s) 953
BisI GCNGC 4 cut(s) 10, 546, 1061, 1167
BlsI GCNGC 4 cut(s) 11, 547, 1062, 1168
BmcAI AGTACT 1 cut(s) 1154
Bme1390I CCNGG 3 cut(s) 58, 708, 921
Bme18I GGWCC 1 cut(s) 1043
BmgT120I GGNCC 2 cut(s) 954, 1043
BmiI GGNNCC 7 cut(s) 35, 378, 536, 625, 825, 946, 1045
BmrFI CCNGG 3 cut(s) 58, 708, 921
BmrI ACTGGG 1 cut(s) 829
BmsI GCATC 3 cut(s) 589, 1168, 1180
BmuI ACTGGG 1 cut(s) 829
BpiI GAAGAC 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 525
BpuEI CTTGAG 2 cut(s) 13, 1109
BpuMI CCSGG 3 cut(s) 58, 708, 921
Bsa29I ATCGAT 1 cut(s) 933
BsaAI YACGTR 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 455
BsaJI CCNNGG 3 cut(s) 388, 706, 919
BsaWI WCCGGW 2 cut(s) 755, 992
Bse118I RCCGGY 1 cut(s) 755
Bse1I ACTGG 4 cut(s) 427, 824, 862, 1150
Bse21I CCTNAGG 1 cut(s) 950
Bse3DI GCAATG 2 cut(s) 303, 675
Bse8I GATNNNNATC 1 cut(s) 455
BseCI ATCGAT 1 cut(s) 933
BseDI CCNNGG 3 cut(s) 388, 706, 919
BseGI GGATG 3 cut(s) 53, 298, 789
BseJI GATNNNNATC 1 cut(s) 455
BseMI GCAATG 2 cut(s) 303, 675
BseNI ACTGG 4 cut(s) 427, 824, 862, 1150
BseRI GAGGAG 2 cut(s) 740, 774
BseSI GKGCMC 1 cut(s) 949
BseXI GCAGC 4 cut(s) 21, 557, 1072, 1153
BsgI GTGCAG 1 cut(s) 838
BshFI GGCC 5 cut(s) 126, 227, 924, 956, 1145
BshNI GGYRCC 2 cut(s) 534, 944
BshTI ACCGGT 1 cut(s) 755
BshVI ATCGAT 1 cut(s) 933
BsiSI CCGG 6 cut(s) 57, 480, 708, 756, 921, 993
BsiWI CGTACG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 725
BsmAI GTCTC 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 725
BsnI GGCC 5 cut(s) 126, 227, 924, 956, 1145
Bsp1286I GDGCHC 2 cut(s) 826, 949
Bsp1407I TGTACA 1 cut(s) 714
Bsp143I GATC 3 cut(s) 522, 592, 838
BspACI CCGC 1 cut(s) 513
BspANI GGCC 5 cut(s) 126, 227, 924, 956, 1145
BspDI ATCGAT 1 cut(s) 933
BspHI TCATGA 4 cut(s) 231, 354, 468, 669
BspLI GGNNCC 7 cut(s) 35, 378, 536, 625, 825, 946, 1045
BspT107I GGYRCC 2 cut(s) 534, 944
BsrDI GCAATG 2 cut(s) 303, 675
BsrFI RCCGGY 1 cut(s) 755
BsrGI TGTACA 1 cut(s) 714
BsrI ACTGG 4 cut(s) 427, 824, 862, 1150
BssAI RCCGGY 1 cut(s) 755
BssECI CCNNGG 3 cut(s) 388, 706, 919
BssMI GATC 3 cut(s) 522, 592, 838
BssT1I CCWWGG 1 cut(s) 388
Bst4CI ACNGT 3 cut(s) 539, 640, 1217
Bst6I CTCTTC 3 cut(s) 197, 587, 1124
BstAUI TGTACA 1 cut(s) 714
BstBAI YACGTR 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 362
BstDEI CTNAG 2 cut(s) 447, 950
BstF5I GGATG 3 cut(s) 53, 298, 789
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 2 cut(s) 257, 578
BstKTI GATC 3 cut(s) 525, 595, 841
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 3 cut(s) 522, 592, 838
BstMWI GCNNNNNNNGC 1 cut(s) 953
BstNSI RCATGY 1 cut(s) 1105
BstSCI CCNGG 3 cut(s) 56, 706, 919
BstSLI GKGCMC 1 cut(s) 949
BstV1I GCAGC 4 cut(s) 21, 557, 1072, 1153
BstV2I GAAGAC 1 cut(s) 99
Bsu15I ATCGAT 1 cut(s) 933
Bsu36I CCTNAGG 1 cut(s) 950
BsuRI GGCC 5 cut(s) 126, 227, 924, 956, 1145
BsuTUI ATCGAT 1 cut(s) 933
BtsCI GGATG 3 cut(s) 53, 298, 789
BtsIMutI CAGTG 3 cut(s) 434, 636, 855
Cac8I GCNNGC 1 cut(s) 362
CaiI CAGNNNCTG 1 cut(s) 608
CciI TCATGA 4 cut(s) 231, 354, 468, 669
CfoI GCGC 2 cut(s) 257, 578
Cfr10I RCCGGY 1 cut(s) 755
Cfr13I GGNCC 2 cut(s) 954, 1043
ClaI ATCGAT 1 cut(s) 933
Csp6I GTAC 5 cut(s) 271, 535, 715, 1093, 1153
CspAI ACCGGT 1 cut(s) 755
CviAII CATG 9 cut(s) 223, 232, 277, 286, 319, 355, 469, 670, 1102
CviQI GTAC 5 cut(s) 271, 535, 715, 1093, 1153
DdeI CTNAG 2 cut(s) 447, 950
DpnI GATC 3 cut(s) 524, 594, 840
DpnII GATC 3 cut(s) 522, 592, 838
EaeI YGGCCR 3 cut(s) 225, 922, 1143
Eam1104I CTCTTC 3 cut(s) 197, 587, 1124
EarI CTCTTC 3 cut(s) 197, 587, 1124
Eco130I CCWWGG 1 cut(s) 388
Eco147I AGGCCT 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 826
Eco32I GATATC 1 cut(s) 553
Eco47I GGWCC 1 cut(s) 1043
Eco47III AGCGCT 1 cut(s) 256
Eco81I CCTNAGG 1 cut(s) 950
EcoO109I RGGNCCY 1 cut(s) 1043
EcoRV GATATC 1 cut(s) 553
EcoT14I CCWWGG 1 cut(s) 388
EcoT38I GRGCYC 1 cut(s) 826
ErhI CCWWGG 1 cut(s) 388
FaeI CATG 9 cut(s) 226, 235, 280, 289, 322, 358, 472, 673, 1105
FaqI GGGAC 1 cut(s) 725
FatI CATG 9 cut(s) 222, 231, 276, 285, 318, 354, 468, 669, 1101
FauI CCCGC 1 cut(s) 520
FbaI TGATCA 1 cut(s) 522
Fnu4HI GCNGC 4 cut(s) 10, 546, 1061, 1167
FokI GGATG 3 cut(s) 40, 305, 776
FriOI GRGCYC 1 cut(s) 826
Fsp4HI GCNGC 4 cut(s) 10, 546, 1061, 1167
FspBI CTAG 1 cut(s) 905
GlaI GCGC 2 cut(s) 256, 577
GluI GCNGC 4 cut(s) 10, 546, 1061, 1167
GsuI CTGGAG 1 cut(s) 525
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 5 cut(s) 126, 227, 924, 956, 1145
HapII CCGG 6 cut(s) 57, 480, 708, 756, 921, 993
HhaI GCGC 2 cut(s) 257, 578
Hin1II CATG 9 cut(s) 226, 235, 280, 289, 322, 358, 472, 673, 1105
Hin6I GCGC 2 cut(s) 255, 576
HinP1I GCGC 2 cut(s) 255, 576
HincII GTYRAC 2 cut(s) 658, 910
HindII GTYRAC 2 cut(s) 658, 910
HindIII AAGCTT 2 cut(s) 326, 1022
HinfI GANTC 2 cut(s) 456, 1134
HpaI GTTAAC 1 cut(s) 658
HpaII CCGG 6 cut(s) 57, 480, 708, 756, 921, 993
HphI GGTGA 3 cut(s) 154, 745, 1187
Hpy166II GTNNAC 8 cut(s) 25, 337, 643, 658, 910, 964, 1006, 1030
Hpy188I TCNGA 3 cut(s) 145, 892, 1189
Hpy188III TCNNGA 7 cut(s) 67, 232, 355, 469, 559, 596, 670
Hpy8I GTNNAC 8 cut(s) 25, 337, 643, 658, 910, 964, 1006, 1030
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 5 cut(s) 283, 556, 925, 1030, 1034
HpyCH4III ACNGT 3 cut(s) 539, 640, 1217
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 4 cut(s) 131, 602, 855, 1111
HpyF10VI GCNNNNNNNGC 1 cut(s) 953
HpyF3I CTNAG 2 cut(s) 447, 950
HpySE526I ACGT 1 cut(s) 269
Hsp92II CATG 9 cut(s) 226, 235, 280, 289, 322, 358, 472, 673, 1105
HspAI GCGC 2 cut(s) 255, 576
KpnI GGTACC 1 cut(s) 538
Ksp22I TGATCA 1 cut(s) 522
KspAI GTTAAC 1 cut(s) 658
Kzo9I GATC 3 cut(s) 522, 592, 838
LmnI GCTCC 8 cut(s) 60, 205, 313, 605, 708, 787, 829, 1089
Lsp1109I GCAGC 4 cut(s) 21, 557, 1072, 1153
LweI GCATC 3 cut(s) 589, 1168, 1180
MaeI CTAG 1 cut(s) 905
MaeII ACGT 1 cut(s) 269
MaeIII GTNAC 2 cut(s) 751, 758
MalI GATC 3 cut(s) 524, 594, 840
MboI GATC 3 cut(s) 522, 592, 838
MboII GAAGA 7 cut(s) 28, 104, 184, 574, 848, 856, 1141
MfeI CAATTG 2 cut(s) 1074, 1139
MhlI GDGCHC 2 cut(s) 826, 949
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 3 cut(s) 485, 1074, 1139
MluNI TGGCCA 1 cut(s) 227
MlyI GAGTC 1 cut(s) 1143
MmeI TCCRAC 1 cut(s) 994
Mox20I TGGCCA 1 cut(s) 227
MscI TGGCCA 1 cut(s) 227
MseI TTAA 1 cut(s) 657
MslI CAYNNNNRTG 2 cut(s) 668, 1106
Msp20I TGGCCA 1 cut(s) 227
MspI CCGG 6 cut(s) 57, 480, 708, 756, 921, 993
MspR9I CCNGG 3 cut(s) 58, 708, 921
MunI CAATTG 2 cut(s) 1074, 1139
MwoI GCNNNNNNNGC 1 cut(s) 953
NciI CCSGG 3 cut(s) 58, 708, 921
NdeII GATC 3 cut(s) 522, 592, 838
NlaIII CATG 9 cut(s) 226, 235, 280, 289, 322, 358, 472, 673, 1105
NlaIV GGNNCC 7 cut(s) 35, 378, 536, 625, 825, 946, 1045
NmuCI GTSAC 1 cut(s) 751
NspI RCATGY 1 cut(s) 1105
PagI TCATGA 4 cut(s) 231, 354, 468, 669
PceI AGGCCT 1 cut(s) 126
PfeI GAWTC 1 cut(s) 456
Pfl23II CGTACG 1 cut(s) 270
PflFI GACNNNGTC 1 cut(s) 248
PfoI TCCNGGA 1 cut(s) 56
PinAI ACCGGT 1 cut(s) 755
PkrI GCNGC 4 cut(s) 11, 547, 1062, 1168
PleI GAGTC 1 cut(s) 1142
PpsI GAGTC 1 cut(s) 1142
Ppu21I YACGTR 1 cut(s) 270
PpuMI RGGWCCY 1 cut(s) 1043
Psp5II RGGWCCY 1 cut(s) 1043
PspLI CGTACG 1 cut(s) 270
PspN4I GGNNCC 7 cut(s) 35, 378, 536, 625, 825, 946, 1045
PspPI GGNCC 2 cut(s) 954, 1043
PspPPI RGGWCCY 1 cut(s) 1043
PstNI CAGNNNCTG 1 cut(s) 608
PsyI GACNNNGTC 1 cut(s) 248
RsaI GTAC 5 cut(s) 272, 536, 716, 1094, 1154
RsaNI GTAC 5 cut(s) 271, 535, 715, 1093, 1153
RseI CAYNNNNRTG 2 cut(s) 668, 1106
SaqAI TTAA 1 cut(s) 657
SatI GCNGC 4 cut(s) 10, 546, 1061, 1167
Sau3AI GATC 3 cut(s) 522, 592, 838
Sau96I GGNCC 2 cut(s) 954, 1043
ScaI AGTACT 1 cut(s) 1154
SchI GAGTC 1 cut(s) 1143
ScrFI CCNGG 3 cut(s) 58, 708, 921
SduI GDGCHC 2 cut(s) 826, 949
SfaNI GCATC 3 cut(s) 589, 1168, 1180
SinI GGWCC 1 cut(s) 1043
SmiMI CAYNNNNRTG 2 cut(s) 668, 1106
SmlI CTYRAG 2 cut(s) 28, 1088
SmoI CTYRAG 2 cut(s) 28, 1088
Sse9I AATT 3 cut(s) 485, 1074, 1139
SseBI AGGCCT 1 cut(s) 126
SsiI CCGC 1 cut(s) 513
SspMI CTAG 1 cut(s) 905
StuI AGGCCT 1 cut(s) 126
StyD4I CCNGG 3 cut(s) 56, 706, 919
StyI CCWWGG 1 cut(s) 388
TaaI ACNGT 3 cut(s) 539, 640, 1217
TaiI ACGT 1 cut(s) 272
TaqI TCGA 4 cut(s) 87, 933, 1034, 1056
TaqII GACCGA 1 cut(s) 119
TasI AATT 3 cut(s) 485, 1074, 1139
TatI WGTACW 2 cut(s) 714, 1152
TfiI GAWTC 1 cut(s) 456
Tru1I TTAA 1 cut(s) 657
Tru9I TTAA 1 cut(s) 657
TscAI CASTG 3 cut(s) 434, 643, 862
TseFI GTSAC 1 cut(s) 751
TseI GCWGC 4 cut(s) 9, 545, 1060, 1166
Tsp45I GTSAC 1 cut(s) 751
TspDTI ATGAA 7 cut(s) 105, 302, 307, 343, 574, 686, 987
TspGWI ACGGA 3 cut(s) 228, 782, 1110
TspRI CASTG 3 cut(s) 434, 643, 862
Tth111I GACNNNGTC 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 1043
XceI RCATGY 1 cut(s) 1105
XspI CTAG 1 cut(s) 905
ZrmI AGTACT 1 cut(s) 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.