Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000911

Physical Location & Seq

Genomic Coordinates Reverse (-)

74135300 .. 74138527

Gene Structure 3228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG466900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCAGTTGAGCTTGAACAGCTCTGGTGCTGGAAGCTCAATCCCAAGCTCAGCTTTCTTGGGCAGCAGTTTGAAGAAGGTCAACAACACAAGACTTCCCTACCAAAAATCTGTATCTGCAGGTAGCTTGAGAATCACAGCAGAAATCGATGAGGGAAAGCAGTCGAAATCAGACAAGTGGAAAGGCCTTGCTTATGACATTTCTGATGACCAACAAGACATTACAAGAGGAAAGGGAATGGTTGATTCTGTCTTCCAAGCTCCCACTGGGACTGGGACTCACAATGCCATCATGAGCTCATATGATTACATCAGCACCGGACTTCGCACGTACAACTTGGATAACAACATGGATGGGTTTTACATAGCTCCAGCTTTCATGGACAAGCTTGTGGTTCATATCACCAAGAACTTCATGAGCCTGCCTAACATTAAGGTTCCCCTTATTCTTGGTATATGGGGAGGAAAAGGTCAGGGAAAATCATTCCAGTGTGAGCTTGTGTTTGCCAAGATGGGAATTACCCCCATCATGATGAGTGCTGGAGAATTAGAAAGTGGGAATGCAGGAGAGCCAGCAAAGTTGATCAGACAAAGGTATCGGGAGGCTTCAGACATCATCCGAAAAGGAAAAATGTGTGCCCTCTTCATCAATGATCTCGATGCAGGTGCTGGTAGGATGGGTGGAACCACACAGTACACTGTGAACAACCAGATGGTCAACGCAACCCTGATGAACATTGCTGATAACCCAACAAATGTGCAGCTTCCCGGTATGTACAACAAGGAGGACAATGCTAGAGTGCCGGTTATAGTCACTGGTAATGACTTCTCTACACTCTATGCGCCTCTTATCCGTGATGGTCGTATGGAGAAGTTTTACTGGGCTCCCACAAGGGAAGACCGGATTGGTGTTTGCATCGGAATCTTCAAGACTGACAATATTCCTGAGGAGGCTGTTGTTAAGATTGTAGACACATTCCCTGGTCAATCTATTGGTAAGCATAGATTAAATATTGAGACAAGTATGAAACAAGAAATTAGAAATGCATTGATTTGTGGAGAGTGTTTGCCATATCATATATATCGATTAACATTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

366

Amino Acids

40.26

Weight (kDa)

8.64

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	152 - 295	4.3e-17	ATPase family associated with various cellular activities (AAA)
RuBisCO_activase_AAA_helical	PF21228	298 - 331	6.5e-08	Ribulose bisphosphate carboxylase/oxygenase activase, AAA, helical

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39730 AT2G39730 AT2G39730
fragaria_vesca	FvH4_3g36920 FvH4_6g13160 FvH4_6g13160 FvH4_6g13160 FvH4_7g22910 FvH4_7g22910 FvH4_7g22910 FvH4_7g22910 FvH4_7g22910
malus_domestica	MD01G1137900.v1.1 MD03G1086300.v1.1 MD04G1134100.v1.1 MD07G1202200.v1.1 MD11G1095300.v1.1
prunus_persica	Prupe.2G238800_v2.0.a1 Prupe.2G238800_v2.0.a1 Prupe.2G238800_v2.0.a1 Prupe.6G070800_v2.0.a1 Prupe.6G070800_v2.0.a1 Prupe.6G070800_v2.0.a1 Prupe.6G260200_v2.0.a1 Prupe.6G260200_v2.0.a1
pyrus_communis	pycom01g15900 pycom03g06850 pycom04g12180 pycom07g18940 pycom11g08080
rosa_chinensis	RchiOBHm_Chr1g0368091 RchiOBHm_Chr3g0465651 RchiOBHm_Chr5g0066321
rosa_laevigata	RLG00000024631 RLG00000027241 RLG00000035850
rosa_multiflora	Rmu_co8504071.1_g000001 Rmu_sc0000550.1_g000020 Rmu_sc0006814.1_g000009 Rmu_sc0007705.1_g000023
rosa_roxburghii	Rroxscaffold_1G00014810 Rroxscaffold_4G00288870 Rroxscaffold_6G00414950
rosa_rugosa	Rorug01G0338800 Rorug03G0077700 Rorug03G0077800 Rorug03G0077900 Rorug03G0078000 Rorug05G0377100 Rorug05G0377200
rosa_samantha	Rh1AG345800 Rh1BG308200 Rh1CG323900 Rh1DG340300 Rh3BG143500 Rh3CG144500 Rh3DG144800 Rh5AG435700 Rh5BG452000 Rh5CG474300 Rh5DG466900
rosa_wichuraiana	Rw1G030780 Rw3G011650 Rw3G011690 Rw5G040800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	653
Acc36I	ACCTGC	2 cut(s)	110, 653
AccI	GTMKAC	1 cut(s)	969
AcuI	CTGAAG	1 cut(s)	591
AfaI	GTAC	3 cut(s)	332, 695, 776
AgsI	TTSAA	3 cut(s)	16, 73, 928
AjnI	CCWGG	1 cut(s)	979
AjuI	GAANNNNNNNTTGG	2 cut(s)	888, 920
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	1010
AlwNI	CAGNNNCTG	1 cut(s)	668
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	2 cut(s)	63, 760
AspLEI	GCGC	1 cut(s)	844
AsuC2I	CCSGG	1 cut(s)	768
AsuHPI	GGTGA	1 cut(s)	394
AxyI	CCTNAGG	1 cut(s)	945
BaeGI	GKGCMC	1 cut(s)	640
BaeI	ACNNNNGTAYC	2 cut(s)	578, 611
BanII	GRGCYC	2 cut(s)	299, 886
BbsI	GAAGAC	2 cut(s)	244, 903
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	75, 772
BccI	CCATC	7 cut(s)	296, 347, 505, 533, 670, 706, 851
BcgI	CGANNNNNNTGC	2 cut(s)	647, 681
BciT130I	CCWGG	1 cut(s)	981
BclI	TGATCA	1 cut(s)	582
BcnI	CCSGG	1 cut(s)	768
BcoDI	GTCTC	1 cut(s)	1010
BfaI	CTAG	1 cut(s)	795
BfmI	CTRYAG	1 cut(s)	117
BfuAI	ACCTGC	2 cut(s)	110, 653
BisI	GCNGC	2 cut(s)	64, 761
BlpI	GCTNAGC	1 cut(s)	49
BlsI	GCNGC	2 cut(s)	65, 762
Bme1390I	CCNGG	2 cut(s)	768, 981
BmiI	GGNNCC	3 cut(s)	438, 685, 885
BmrFI	CCNGG	2 cut(s)	768, 981
BmrI	ACTGGG	3 cut(s)	276, 282, 889
BmsI	GCATC	2 cut(s)	649, 924
BmuI	ACTGGG	3 cut(s)	276, 282, 889
BpiI	GAAGAC	2 cut(s)	244, 903
BpmI	CTGGAG	2 cut(s)	354, 561
Bpu1102I	GCTNAGC	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	148
BpuMI	CCSGG	1 cut(s)	768
Bsa29I	ATCGAT	2 cut(s)	147, 1084
BsaAI	YACGTR	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	979
BsaWI	WCCGGW	2 cut(s)	317, 900
Bse118I	RCCGGY	1 cut(s)	802
Bse1I	ACTGG	5 cut(s)	271, 277, 487, 820, 884
Bse21I	CCTNAGG	1 cut(s)	945
Bse3DI	GCAATG	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	981
BseCI	ATCGAT	2 cut(s)	147, 1084
BseDI	CCNNGG	1 cut(s)	979
BseGI	GGATG	3 cut(s)	358, 615, 681
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	2 cut(s)	63, 936
BseNI	ACTGG	5 cut(s)	271, 277, 487, 820, 884
BseRI	GAGGAG	1 cut(s)	962
BseSI	GKGCMC	1 cut(s)	640
BseXI	GCAGC	2 cut(s)	75, 772
BsgI	GTGCAG	1 cut(s)	779
BshFI	GGCC	1 cut(s)	186
BshVI	ATCGAT	2 cut(s)	147, 1084
BsiHKAI	GWGCWC	1 cut(s)	299
BsiSI	CCGG	4 cut(s)	318, 768, 803, 901
BslFI	GGGAC	2 cut(s)	283, 289
BsmAI	GTCTC	1 cut(s)	1010
BsmFI	GGGAC	2 cut(s)	283, 289
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	1 cut(s)	186
Bsp1286I	GDGCHC	3 cut(s)	299, 640, 886
Bsp1407I	TGTACA	1 cut(s)	774
Bsp143I	GATC	2 cut(s)	582, 652
Bsp1720I	GCTNAGC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	2 cut(s)	62, 937
BspDI	ATCGAT	2 cut(s)	147, 1084
BspHI	TCATGA	3 cut(s)	291, 414, 528
BspLI	GGNNCC	3 cut(s)	438, 685, 885
BspMAI	CTGCAG	1 cut(s)	121
BspMI	ACCTGC	2 cut(s)	110, 653
BsrDI	GCAATG	1 cut(s)	735
BsrFI	RCCGGY	1 cut(s)	802
BsrGI	TGTACA	1 cut(s)	774
BsrI	ACTGG	5 cut(s)	271, 277, 487, 820, 884
BssAI	RCCGGY	1 cut(s)	802
BssECI	CCNNGG	1 cut(s)	979
BssMI	GATC	2 cut(s)	582, 652
Bst2UI	CCWGG	1 cut(s)	981
Bst4CI	ACNGT	2 cut(s)	693, 700
Bst6I	CTCTTC	1 cut(s)	647
BstAUI	TGTACA	1 cut(s)	774
BstBAI	YACGTR	1 cut(s)	330
BstC8I	GCNNGC	2 cut(s)	422, 573
BstDEI	CTNAG	2 cut(s)	49, 945
BstF5I	GGATG	3 cut(s)	358, 615, 681
BstHHI	GCGC	1 cut(s)	844
BstKTI	GATC	2 cut(s)	585, 655
BstMAI	GTCTC	1 cut(s)	1010
BstMBI	GATC	2 cut(s)	582, 652
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstNI	CCWGG	1 cut(s)	981
BstSCI	CCNGG	2 cut(s)	766, 979
BstSFI	CTRYAG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	640
BstV1I	GCAGC	2 cut(s)	75, 772
BstV2I	GAAGAC	2 cut(s)	244, 903
Bsu15I	ATCGAT	2 cut(s)	147, 1084
Bsu36I	CCTNAGG	1 cut(s)	945
BsuRI	GGCC	1 cut(s)	186
BsuTUI	ATCGAT	2 cut(s)	147, 1084
BtsCI	GGATG	3 cut(s)	358, 615, 681
BtsIMutI	CAGTG	4 cut(s)	264, 494, 696, 813
BveI	ACCTGC	2 cut(s)	110, 653
Cac8I	GCNNGC	2 cut(s)	422, 573
CaiI	CAGNNNCTG	1 cut(s)	668
CciI	TCATGA	3 cut(s)	291, 414, 528
CfoI	GCGC	1 cut(s)	844
Cfr10I	RCCGGY	1 cut(s)	802
ClaI	ATCGAT	2 cut(s)	147, 1084
Csp6I	GTAC	3 cut(s)	331, 694, 775
CviAII	CATG	6 cut(s)	292, 349, 379, 415, 529, 1098
CviQI	GTAC	3 cut(s)	331, 694, 775
DdeI	CTNAG	2 cut(s)	49, 945
DpnI	GATC	2 cut(s)	584, 654
DpnII	GATC	2 cut(s)	582, 652
Eam1104I	CTCTTC	1 cut(s)	647
EarI	CTCTTC	1 cut(s)	647
Ecl136II	GAGCTC	1 cut(s)	297
Eco147I	AGGCCT	1 cut(s)	186
Eco24I	GRGCYC	2 cut(s)	299, 886
Eco53kI	GAGCTC	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	591
Eco81I	CCTNAGG	1 cut(s)	945
EcoICRI	GAGCTC	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	979
EcoT22I	ATGCAT	1 cut(s)	1048
EcoT38I	GRGCYC	2 cut(s)	299, 886
FaeI	CATG	6 cut(s)	295, 352, 382, 418, 532, 1101
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FaqI	GGGAC	2 cut(s)	283, 289
FatI	CATG	6 cut(s)	291, 348, 378, 414, 528, 1097
FauNDI	CATATG	1 cut(s)	301
FbaI	TGATCA	1 cut(s)	582
FblI	GTMKAC	1 cut(s)	969
Fnu4HI	GCNGC	2 cut(s)	64, 761
FokI	GGATG	3 cut(s)	365, 602, 688
FriOI	GRGCYC	2 cut(s)	299, 886
Fsp4HI	GCNGC	2 cut(s)	64, 761
FspBI	CTAG	1 cut(s)	795
GlaI	GCGC	1 cut(s)	843
GluI	GCNGC	2 cut(s)	64, 761
GsuI	CTGGAG	2 cut(s)	354, 561
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	4 cut(s)	318, 768, 803, 901
HhaI	GCGC	1 cut(s)	844
Hin1II	CATG	6 cut(s)	295, 352, 382, 418, 532, 1101
Hin6I	GCGC	1 cut(s)	842
HinP1I	GCGC	1 cut(s)	842
HincII	GTYRAC	2 cut(s)	82, 718
HindII	GTYRAC	2 cut(s)	82, 718
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	4 cut(s)	132, 245, 277, 921
HpaII	CCGG	4 cut(s)	318, 768, 803, 901
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	5 cut(s)	82, 696, 703, 718, 970
Hpy188I	TCNGA	6 cut(s)	172, 205, 587, 610, 620, 920
Hpy188III	TCNNGA	7 cut(s)	292, 415, 529, 599, 656, 928, 944
Hpy8I	GTNNAC	5 cut(s)	82, 696, 703, 718, 970
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	2 cut(s)	693, 700
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	7 cut(s)	4, 119, 563, 662, 760, 915, 1046
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	2 cut(s)	49, 945
HpySE526I	ACGT	1 cut(s)	329
Hsp92II	CATG	6 cut(s)	295, 352, 382, 418, 532, 1101
HspAI	GCGC	1 cut(s)	842
Ksp22I	TGATCA	1 cut(s)	582
Kzo9I	GATC	2 cut(s)	582, 652
LmnI	GCTCC	3 cut(s)	265, 373, 889
Lsp1109I	GCAGC	2 cut(s)	75, 772
LweI	GCATC	2 cut(s)	649, 924
MaeI	CTAG	1 cut(s)	795
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	811
MalI	GATC	2 cut(s)	584, 654
MboI	GATC	2 cut(s)	582, 652
MboII	GAAGA	5 cut(s)	85, 244, 634, 908, 916
MhlI	GDGCHC	3 cut(s)	299, 640, 886
MluCI	AATT	3 cut(s)	516, 545, 1035
MlyI	GAGTC	1 cut(s)	271
MnlI	CCTC	9 cut(s)	145, 221, 455, 595, 650, 778, 855, 940, 943
Mph1103I	ATGCAT	1 cut(s)	1048
MseI	TTAA	4 cut(s)	432, 960, 1007, 1088
MslI	CAYNNNNRTG	3 cut(s)	487, 530, 1096
MspI	CCGG	4 cut(s)	318, 768, 803, 901
MspR9I	CCNGG	2 cut(s)	768, 981
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	981
MwoI	GCNNNNNNNGC	1 cut(s)	18
NciI	CCSGG	1 cut(s)	768
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	2 cut(s)	582, 652
NlaIII	CATG	6 cut(s)	295, 352, 382, 418, 532, 1101
NlaIV	GGNNCC	3 cut(s)	438, 685, 885
NmuCI	GTSAC	1 cut(s)	811
NsiI	ATGCAT	1 cut(s)	1048
PagI	TCATGA	3 cut(s)	291, 414, 528
PaqCI	CACCTGC	1 cut(s)	653
PceI	AGGCCT	1 cut(s)	186
PctI	GAATGC	1 cut(s)	565
PfeI	GAWTC	3 cut(s)	132, 245, 921
PkrI	GCNGC	2 cut(s)	65, 762
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Ppu21I	YACGTR	1 cut(s)	330
Psp124BI	GAGCTC	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	979
PspGI	CCWGG	1 cut(s)	979
PspN4I	GGNNCC	3 cut(s)	438, 685, 885
PstI	CTGCAG	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	668
RsaI	GTAC	3 cut(s)	332, 695, 776
RsaNI	GTAC	3 cut(s)	331, 694, 775
RseI	CAYNNNNRTG	3 cut(s)	487, 530, 1096
SacI	GAGCTC	1 cut(s)	299
SaqAI	TTAA	4 cut(s)	432, 960, 1007, 1088
SatI	GCNGC	2 cut(s)	64, 761
Sau3AI	GATC	2 cut(s)	582, 652
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	2 cut(s)	768, 981
SduI	GDGCHC	3 cut(s)	299, 640, 886
SfaNI	GCATC	2 cut(s)	649, 924
SfcI	CTRYAG	1 cut(s)	117
SmiMI	CAYNNNNRTG	3 cut(s)	487, 530, 1096
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	3 cut(s)	516, 545, 1035
SseBI	AGGCCT	1 cut(s)	186
SspI	AATATT	2 cut(s)	940, 1012
SspMI	CTAG	1 cut(s)	795
SstI	GAGCTC	1 cut(s)	299
StuI	AGGCCT	1 cut(s)	186
StyD4I	CCNGG	2 cut(s)	766, 979
TaaI	ACNGT	2 cut(s)	693, 700
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	4 cut(s)	147, 164, 657, 1084
TasI	AATT	3 cut(s)	516, 545, 1035
TatI	WGTACW	2 cut(s)	693, 774
TfiI	GAWTC	3 cut(s)	132, 245, 921
Tru1I	TTAA	4 cut(s)	432, 960, 1007, 1088
Tru9I	TTAA	4 cut(s)	432, 960, 1007, 1088
TscAI	CASTG	4 cut(s)	271, 494, 703, 820
TseFI	GTSAC	1 cut(s)	811
TseI	GCWGC	2 cut(s)	63, 760
Tsp45I	GTSAC	1 cut(s)	811
TspDTI	ATGAA	6 cut(s)	367, 386, 403, 634, 746, 1040
TspGWI	ACGGA	1 cut(s)	842
TspRI	CASTG	4 cut(s)	271, 494, 703, 820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	969
XspI	CTAG	1 cut(s)	795
Zsp2I	ATGCAT	1 cut(s)	1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.