Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000911

Physical Location & Seq

Genomic Coordinates Reverse (-)

58174153 .. 58177711

Gene Structure 3559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG345800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGGAAGCAGCTTGAAGAAAGTGAACTCAAGGTTCCCCAACTCCAAAGTCTCATCCGGGAGCTTCAAGATTGTAGCAGAGGCAGTCGATGAAGACAAGCAGACAGAAACGGACAAATGGAAAGGCCTTGCCTTTGACACCTCCGATGACCAACAAGACATCACCAGAGGAAAGGGTATGGTTGATACCCTCTTCCAAGCTCCAATGGGCGACGGAACTCACATGGCCATCATGAGTTCTTATGACTATGTCAGCGCTGGACTTCGCACGTACGACATGGACAACATGAAGGATGGTTTATACATTGCTCCTGCTTTCATGGACAAGCTTGTTGTTCATATCACAAAGAACTTCATGAGCTTGCCTAACATCAAGGTTCCCCTTATCCTTGGTATTTGGGGAGGCAAAGGTCAGGGTAAATCTTTCCAGTGTGAGCTTGTGTTTGCTAAGATGGGAATCAACCCTATCATGATGAGTGCCGGAGAATTGGAAAGTGGAAACGCTGGAGAACCCGCAAAGTTGATCAGGCAAAGGTACCGTGAGGCAGCCGATATCATCAGGAAGGGGAAAATGTGCGCCCTCTTCATCAACGATCTTGATGCAGGAGCTGGTCGTATGGGTGGAACCACCCAATACACTGTGAACAACCAGATGGTTAACGCCACCCTCATGAACATTGCTGATAACCCAACCAATGTCCAGCTCCCCGGTATGTACAACAAGGAGGAGAACCCCCGTGTCCCCATCATTGTCACAGGTAACGATTTCTCAACATTGTATGCTCCTCTCATCCGTGATGGGCGTATGGAAAAGTTCTACTGGGCTCCTACAAGAGAAGATCGTATTGGTGTCTGCACTGGTATCTTCAAATCTGACAATGTTGCCCAATCCGATATTGTCAAGCTAGTTGACACCTTCCCCGGCCAATCCATCGGTAAGTTTCCAAACCAAATTGTTGAAAATGTTATGTTGTCACACCTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

328

Amino Acids

36.17

Weight (kDa)

6.02

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	132 - 275	4e-17	ATPase family associated with various cellular activities (AAA)
RuBisCO_activase_AAA_helical	PF21228	278 - 314	3.2e-09	Ribulose bisphosphate carboxylase/oxygenase activase, AAA, helical

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39730 AT2G39730 AT2G39730
fragaria_vesca	FvH4_3g36920 FvH4_6g13160 FvH4_6g13160 FvH4_6g13160 FvH4_7g22910 FvH4_7g22910 FvH4_7g22910 FvH4_7g22910 FvH4_7g22910
malus_domestica	MD01G1137900.v1.1 MD03G1086300.v1.1 MD04G1134100.v1.1 MD07G1202200.v1.1 MD11G1095300.v1.1
prunus_persica	Prupe.2G238800_v2.0.a1 Prupe.2G238800_v2.0.a1 Prupe.2G238800_v2.0.a1 Prupe.6G070800_v2.0.a1 Prupe.6G070800_v2.0.a1 Prupe.6G070800_v2.0.a1 Prupe.6G260200_v2.0.a1 Prupe.6G260200_v2.0.a1
pyrus_communis	pycom01g15900 pycom03g06850 pycom04g12180 pycom07g18940 pycom11g08080
rosa_chinensis	RchiOBHm_Chr1g0368091 RchiOBHm_Chr3g0465651 RchiOBHm_Chr5g0066321
rosa_laevigata	RLG00000024631 RLG00000027241 RLG00000035850
rosa_multiflora	Rmu_co8504071.1_g000001 Rmu_sc0000550.1_g000020 Rmu_sc0006814.1_g000009 Rmu_sc0007705.1_g000023
rosa_roxburghii	Rroxscaffold_1G00014810 Rroxscaffold_4G00288870 Rroxscaffold_6G00414950
rosa_rugosa	Rorug01G0338800 Rorug03G0077700 Rorug03G0077800 Rorug03G0077900 Rorug03G0078000 Rorug05G0377100 Rorug05G0377200
rosa_samantha	Rh1AG345800 Rh1BG308200 Rh1CG323900 Rh1DG340300 Rh3BG143500 Rh3CG144500 Rh3DG144800 Rh5AG435700 Rh5BG452000 Rh5CG474300 Rh5DG466900
rosa_wichuraiana	Rw1G030780 Rw3G011650 Rw3G011690 Rw5G040800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	534
AccB1I	GGYRCC	1 cut(s)	534
AciI	CCGC	1 cut(s)	513
AcoI	YGGCCR	2 cut(s)	225, 922
AfaI	GTAC	3 cut(s)	272, 536, 716
AfeI	AGCGCT	1 cut(s)	256
AgsI	TTSAA	5 cut(s)	16, 67, 868, 959, 983
AjuI	GAANNNNNNNTTGG	2 cut(s)	828, 860
AluBI	AGCT	9 cut(s)	12, 63, 200, 328, 360, 436, 608, 703, 904
AluI	AGCT	9 cut(s)	12, 63, 200, 328, 360, 436, 608, 703, 904
Alw26I	GTCTC	1 cut(s)	55
AlwNI	CAGNNNCTG	1 cut(s)	608
Aor51HI	AGCGCT	1 cut(s)	256
AoxI	GGCC	3 cut(s)	124, 225, 922
ApeKI	GCWGC	2 cut(s)	9, 545
Asp718I	GGTACC	1 cut(s)	534
AspLEI	GCGC	2 cut(s)	257, 578
AsuC2I	CCSGG	3 cut(s)	58, 708, 921
AsuHPI	GGTGA	1 cut(s)	154
BalI	TGGCCA	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	534
BanII	GRGCYC	1 cut(s)	826
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	21, 557
BccI	CCATC	7 cut(s)	236, 287, 445, 646, 752, 791, 938
BcgI	CGANNNNNNTGC	2 cut(s)	581, 615
BclI	TGATCA	1 cut(s)	522
BcnI	CCSGG	3 cut(s)	58, 708, 921
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	905
BfoI	RGCGCY	1 cut(s)	258
BisI	GCNGC	2 cut(s)	10, 546
BlsI	GCNGC	2 cut(s)	11, 547
Bme1390I	CCNGG	3 cut(s)	58, 708, 921
BmiI	GGNNCC	5 cut(s)	35, 378, 536, 625, 825
BmrFI	CCNGG	3 cut(s)	58, 708, 921
BmrI	ACTGGG	1 cut(s)	829
BmsI	GCATC	1 cut(s)	589
BmuI	ACTGGG	1 cut(s)	829
BpiI	GAAGAC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	13
BpuMI	CCSGG	3 cut(s)	58, 708, 921
BsaAI	YACGTR	1 cut(s)	270
BsaBI	GATNNNNATC	1 cut(s)	455
BsaJI	CCNNGG	3 cut(s)	388, 706, 919
Bse1I	ACTGG	3 cut(s)	427, 824, 862
Bse3DI	GCAATG	2 cut(s)	303, 675
Bse8I	GATNNNNATC	1 cut(s)	455
BseDI	CCNNGG	3 cut(s)	388, 706, 919
BseGI	GGATG	3 cut(s)	53, 298, 789
BseJI	GATNNNNATC	1 cut(s)	455
BseMI	GCAATG	2 cut(s)	303, 675
BseNI	ACTGG	3 cut(s)	427, 824, 862
BseRI	GAGGAG	2 cut(s)	740, 774
BseXI	GCAGC	2 cut(s)	21, 557
BsgI	GTGCAG	1 cut(s)	838
BshFI	GGCC	3 cut(s)	126, 227, 924
BshNI	GGYRCC	1 cut(s)	534
BsiSI	CCGG	4 cut(s)	57, 480, 708, 921
BsiWI	CGTACG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	725
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	725
BsnI	GGCC	3 cut(s)	126, 227, 924
Bsp1286I	GDGCHC	1 cut(s)	826
Bsp1407I	TGTACA	1 cut(s)	714
Bsp143I	GATC	3 cut(s)	522, 592, 838
BspACI	CCGC	1 cut(s)	513
BspANI	GGCC	3 cut(s)	126, 227, 924
BspHI	TCATGA	4 cut(s)	231, 354, 468, 669
BspLI	GGNNCC	5 cut(s)	35, 378, 536, 625, 825
BspT107I	GGYRCC	1 cut(s)	534
BsrDI	GCAATG	2 cut(s)	303, 675
BsrGI	TGTACA	1 cut(s)	714
BsrI	ACTGG	3 cut(s)	427, 824, 862
BssECI	CCNNGG	3 cut(s)	388, 706, 919
BssMI	GATC	3 cut(s)	522, 592, 838
BssT1I	CCWWGG	1 cut(s)	388
Bst4CI	ACNGT	2 cut(s)	539, 640
Bst6I	CTCTTC	2 cut(s)	197, 587
BstAUI	TGTACA	1 cut(s)	714
BstBAI	YACGTR	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	1 cut(s)	447
BstF5I	GGATG	3 cut(s)	53, 298, 789
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	2 cut(s)	257, 578
BstKTI	GATC	3 cut(s)	525, 595, 841
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	3 cut(s)	522, 592, 838
BstSCI	CCNGG	3 cut(s)	56, 706, 919
BstV1I	GCAGC	2 cut(s)	21, 557
BstV2I	GAAGAC	1 cut(s)	99
BsuRI	GGCC	3 cut(s)	126, 227, 924
BtsCI	GGATG	3 cut(s)	53, 298, 789
BtsIMutI	CAGTG	3 cut(s)	434, 636, 855
Cac8I	GCNNGC	1 cut(s)	362
CaiI	CAGNNNCTG	1 cut(s)	608
CciI	TCATGA	4 cut(s)	231, 354, 468, 669
CfoI	GCGC	2 cut(s)	257, 578
Csp6I	GTAC	3 cut(s)	271, 535, 715
CviAII	CATG	8 cut(s)	223, 232, 277, 286, 319, 355, 469, 670
CviQI	GTAC	3 cut(s)	271, 535, 715
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	3 cut(s)	524, 594, 840
DpnII	GATC	3 cut(s)	522, 592, 838
EaeI	YGGCCR	2 cut(s)	225, 922
Eam1104I	CTCTTC	2 cut(s)	197, 587
EarI	CTCTTC	2 cut(s)	197, 587
Eco130I	CCWWGG	1 cut(s)	388
Eco147I	AGGCCT	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	826
Eco32I	GATATC	1 cut(s)	553
Eco47III	AGCGCT	1 cut(s)	256
EcoRV	GATATC	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	826
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	8 cut(s)	226, 235, 280, 289, 322, 358, 472, 673
FaqI	GGGAC	1 cut(s)	725
FatI	CATG	8 cut(s)	222, 231, 276, 285, 318, 354, 468, 669
FauI	CCCGC	1 cut(s)	520
FbaI	TGATCA	1 cut(s)	522
Fnu4HI	GCNGC	2 cut(s)	10, 546
FokI	GGATG	3 cut(s)	40, 305, 776
FriOI	GRGCYC	1 cut(s)	826
Fsp4HI	GCNGC	2 cut(s)	10, 546
FspBI	CTAG	1 cut(s)	905
GlaI	GCGC	2 cut(s)	256, 577
GluI	GCNGC	2 cut(s)	10, 546
GsuI	CTGGAG	1 cut(s)	525
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	3 cut(s)	126, 227, 924
HapII	CCGG	4 cut(s)	57, 480, 708, 921
HhaI	GCGC	2 cut(s)	257, 578
Hin1II	CATG	8 cut(s)	226, 235, 280, 289, 322, 358, 472, 673
Hin6I	GCGC	2 cut(s)	255, 576
HinP1I	GCGC	2 cut(s)	255, 576
HincII	GTYRAC	2 cut(s)	658, 910
HindII	GTYRAC	2 cut(s)	658, 910
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	1 cut(s)	456
HpaI	GTTAAC	1 cut(s)	658
HpaII	CCGG	4 cut(s)	57, 480, 708, 921
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	4 cut(s)	25, 643, 658, 910
Hpy188I	TCNGA	3 cut(s)	145, 874, 892
Hpy188III	TCNNGA	7 cut(s)	67, 232, 355, 469, 559, 596, 670
Hpy8I	GTNNAC	4 cut(s)	25, 643, 658, 910
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	283, 556, 925
HpyCH4III	ACNGT	2 cut(s)	539, 640
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	2 cut(s)	602, 855
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	8 cut(s)	226, 235, 280, 289, 322, 358, 472, 673
HspAI	GCGC	2 cut(s)	255, 576
KpnI	GGTACC	1 cut(s)	538
Ksp22I	TGATCA	1 cut(s)	522
KspAI	GTTAAC	1 cut(s)	658
Kzo9I	GATC	3 cut(s)	522, 592, 838
LmnI	GCTCC	7 cut(s)	60, 205, 313, 605, 708, 787, 829
Lsp1109I	GCAGC	2 cut(s)	21, 557
LweI	GCATC	1 cut(s)	589
MaeI	CTAG	1 cut(s)	905
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	3 cut(s)	751, 758, 972
MalI	GATC	3 cut(s)	524, 594, 840
MboI	GATC	3 cut(s)	522, 592, 838
MboII	GAAGA	6 cut(s)	28, 104, 184, 574, 848, 856
MhlI	GDGCHC	1 cut(s)	826
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	2 cut(s)	485, 951
MluNI	TGGCCA	1 cut(s)	227
Mox20I	TGGCCA	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	1 cut(s)	657
MslI	CAYNNNNRTG	1 cut(s)	668
Msp20I	TGGCCA	1 cut(s)	227
MspI	CCGG	4 cut(s)	57, 480, 708, 921
MspR9I	CCNGG	3 cut(s)	58, 708, 921
NciI	CCSGG	3 cut(s)	58, 708, 921
NdeII	GATC	3 cut(s)	522, 592, 838
NlaIII	CATG	8 cut(s)	226, 235, 280, 289, 322, 358, 472, 673
NlaIV	GGNNCC	5 cut(s)	35, 378, 536, 625, 825
NmuCI	GTSAC	2 cut(s)	751, 972
PagI	TCATGA	4 cut(s)	231, 354, 468, 669
PceI	AGGCCT	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	456
Pfl23II	CGTACG	1 cut(s)	270
PflFI	GACNNNGTC	1 cut(s)	248
PfoI	TCCNGGA	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	11, 547
Ppu21I	YACGTR	1 cut(s)	270
PspLI	CGTACG	1 cut(s)	270
PspN4I	GGNNCC	5 cut(s)	35, 378, 536, 625, 825
PstNI	CAGNNNCTG	1 cut(s)	608
PsyI	GACNNNGTC	1 cut(s)	248
RsaI	GTAC	3 cut(s)	272, 536, 716
RsaNI	GTAC	3 cut(s)	271, 535, 715
RseI	CAYNNNNRTG	1 cut(s)	668
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	2 cut(s)	10, 546
Sau3AI	GATC	3 cut(s)	522, 592, 838
ScrFI	CCNGG	3 cut(s)	58, 708, 921
SduI	GDGCHC	1 cut(s)	826
SfaNI	GCATC	1 cut(s)	589
SmiMI	CAYNNNNRTG	1 cut(s)	668
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	2 cut(s)	485, 951
SseBI	AGGCCT	1 cut(s)	126
SsiI	CCGC	1 cut(s)	513
SspMI	CTAG	1 cut(s)	905
StuI	AGGCCT	1 cut(s)	126
StyD4I	CCNGG	3 cut(s)	56, 706, 919
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	2 cut(s)	539, 640
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	1 cut(s)	87
TasI	AATT	2 cut(s)	485, 951
TatI	WGTACW	1 cut(s)	714
TfiI	GAWTC	1 cut(s)	456
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TscAI	CASTG	3 cut(s)	434, 643, 862
TseFI	GTSAC	2 cut(s)	751, 972
TseI	GCWGC	2 cut(s)	9, 545
Tsp45I	GTSAC	2 cut(s)	751, 972
TspDTI	ATGAA	7 cut(s)	105, 302, 307, 326, 343, 574, 686
TspGWI	ACGGA	3 cut(s)	125, 228, 782
TspRI	CASTG	3 cut(s)	434, 643, 862
Tth111I	GACNNNGTC	1 cut(s)	248
XspI	CTAG	1 cut(s)	905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.