Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000911

Physical Location & Seq

Genomic Coordinates Reverse (-)

44397311 .. 44400798

Gene Structure 3488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG308200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCCACCGCCGTCTCCACCATCGGAGCTGTCAACAGAGTCCCGCTGAGCTTAAATGGCTCTAGCGGCAGTGCTTCAGTTCCAAGCTCAAGCTTTATGGGAAGCAGCTTGAAGAAAGTGAACTCAAGGTTCCCCAACTCCAAAGTCTCATCCGGGAGCTTCAAGATTGTAGCAGAGGCAGTCGATGAAGACAAGCAGACCGAAAAGGACAAATGGAAAGGCCTTGCATTTGACACCTCCGATGACCAACAAGACATCACCAGAGGAAAGGGTATGGTTGATACCCTCTTCCAAGCTCCAATGGGCGACGGAACTCACATGGCCATCATGAGTTCTTATGACTATGTCAGCGCTGGACTTCGCACGTACGACATGGACAACATGAAGGATGGTTTATACATTGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACAAAGAACTTCATGAGCTTGCCTAACATCAAGGTTCCCCTTATCCTTGGTATTTGGGGAGGCAAGGGTCAGGGTAAATCTTTCCAGTGTGAGCTTGTGTTTGCTAAGATGGGAATCAACCCTATCATGATGAGTGCCGGAGAATTGGAAAGTGGAAACGCTGGAGAACCCGCAAAGTTGATCAGGCAAAGGTACCGTGAGGCAGCCGATATCATCAGGAAGGGGAAAATGTGCGCCCTCTTCATCAACGATCTTGATGCAGGAGCTGGTCGTATGGGTGGAACCACCCAATACACTGTGAACAACCAGATGGTTAACGCCACCCTCATGAACATTGCTGATAACCCAACCAATGTCCAGCTCCCCGGTATGTACAACAAGGAGGAGAACCCCCGTGTCCCCATCATTGTCACCGGTAACGATTTCTCAACATTGTATGCTCCTCTCATCCGTGATGGGCGTATGGAGAAGTTCTACTGGGCTCCTACAAGAGAAGATCGTATTGGTGTCTGCACTGGTATCTTCAAAGCTGACAATGTTGCCCAATCCGATATTGTCAAGCTAGTTGACACCTTCCCCGGCCAATCCATCGGTAAGTTTCCAAACCAAATTGTTGAAAATGTTATGTTGTCACACCATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

360

Amino Acids

39.24

Weight (kDa)

6.92

Isoelectric Point (pI)

29.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	164 - 307	5e-17	ATPase family associated with various cellular activities (AAA)
RuBisCO_activase_AAA_helical	PF21228	310 - 346	3.9e-09	Ribulose bisphosphate carboxylase/oxygenase activase, AAA, helical

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39730 AT2G39730 AT2G39730
fragaria_vesca	FvH4_3g36920 FvH4_6g13160 FvH4_6g13160 FvH4_6g13160 FvH4_7g22910 FvH4_7g22910 FvH4_7g22910 FvH4_7g22910 FvH4_7g22910
malus_domestica	MD01G1137900.v1.1 MD03G1086300.v1.1 MD04G1134100.v1.1 MD07G1202200.v1.1 MD11G1095300.v1.1
prunus_persica	Prupe.2G238800_v2.0.a1 Prupe.2G238800_v2.0.a1 Prupe.2G238800_v2.0.a1 Prupe.6G070800_v2.0.a1 Prupe.6G070800_v2.0.a1 Prupe.6G070800_v2.0.a1 Prupe.6G260200_v2.0.a1 Prupe.6G260200_v2.0.a1
pyrus_communis	pycom01g15900 pycom03g06850 pycom04g12180 pycom07g18940 pycom11g08080
rosa_chinensis	RchiOBHm_Chr1g0368091 RchiOBHm_Chr3g0465651 RchiOBHm_Chr5g0066321
rosa_laevigata	RLG00000024631 RLG00000027241 RLG00000035850
rosa_multiflora	Rmu_co8504071.1_g000001 Rmu_sc0000550.1_g000020 Rmu_sc0006814.1_g000009 Rmu_sc0007705.1_g000023
rosa_roxburghii	Rroxscaffold_1G00014810 Rroxscaffold_4G00288870 Rroxscaffold_6G00414950
rosa_rugosa	Rorug01G0338800 Rorug03G0077700 Rorug03G0077800 Rorug03G0077900 Rorug03G0078000 Rorug05G0377100 Rorug05G0377200
rosa_samantha	Rh1AG345800 Rh1BG308200 Rh1CG323900 Rh1DG340300 Rh3BG143500 Rh3CG144500 Rh3DG144800 Rh5AG435700 Rh5BG452000 Rh5CG474300 Rh5DG466900
rosa_wichuraiana	Rw1G030780 Rw3G011650 Rw3G011690 Rw5G040800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	630
AccB1I	GGYRCC	1 cut(s)	630
AciI	CCGC	4 cut(s)	9, 44, 66, 609
AcoI	YGGCCR	3 cut(s)	3, 321, 1018
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	3 cut(s)	368, 632, 812
AfeI	AGCGCT	1 cut(s)	352
AgeI	ACCGGT	1 cut(s)	851
AgsI	TTSAA	4 cut(s)	112, 163, 964, 1055
AjuI	GAANNNNNNNTTGG	2 cut(s)	924, 956
Alw26I	GTCTC	2 cut(s)	19, 151
AlwNI	CAGNNNCTG	1 cut(s)	704
Aor51HI	AGCGCT	1 cut(s)	352
AoxI	GGCC	4 cut(s)	3, 220, 321, 1018
ApeKI	GCWGC	2 cut(s)	105, 641
AsiGI	ACCGGT	1 cut(s)	851
Asp718I	GGTACC	1 cut(s)	630
AspLEI	GCGC	2 cut(s)	353, 674
AsuC2I	CCSGG	3 cut(s)	154, 804, 1017
AsuHPI	GGTGA	2 cut(s)	250, 841
BalI	TGGCCA	2 cut(s)	5, 323
BanI	GGYRCC	1 cut(s)	630
BanII	GRGCYC	1 cut(s)	922
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	117, 653
BccI	CCATC	8 cut(s)	29, 332, 383, 541, 742, 848, 887, 1034
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BclI	TGATCA	1 cut(s)	618
BcnI	CCSGG	3 cut(s)	154, 804, 1017
BcoDI	GTCTC	2 cut(s)	19, 151
BfaI	CTAG	2 cut(s)	63, 1001
BfoI	RGCGCY	1 cut(s)	354
BisI	GCNGC	3 cut(s)	67, 106, 642
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	3 cut(s)	68, 107, 643
Bme1390I	CCNGG	3 cut(s)	154, 804, 1017
BmiI	GGNNCC	5 cut(s)	131, 474, 632, 721, 921
BmrFI	CCNGG	3 cut(s)	154, 804, 1017
BmrI	ACTGGG	1 cut(s)	925
BmsI	GCATC	1 cut(s)	685
BmuI	ACTGGG	1 cut(s)	925
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	621
Bpu1102I	GCTNAGC	1 cut(s)	47
BpuEI	CTTGAG	2 cut(s)	73, 109
BpuMI	CCSGG	3 cut(s)	154, 804, 1017
BsaAI	YACGTR	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	551
BsaJI	CCNNGG	3 cut(s)	484, 802, 1015
BsaWI	WCCGGW	1 cut(s)	851
Bse118I	RCCGGY	1 cut(s)	851
Bse1I	ACTGG	3 cut(s)	523, 920, 958
Bse3DI	GCAATG	2 cut(s)	399, 771
Bse8I	GATNNNNATC	1 cut(s)	551
BseDI	CCNNGG	3 cut(s)	484, 802, 1015
BseGI	GGATG	3 cut(s)	149, 394, 885
BseJI	GATNNNNATC	1 cut(s)	551
BseMI	GCAATG	2 cut(s)	399, 771
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	3 cut(s)	523, 920, 958
BseRI	GAGGAG	2 cut(s)	836, 870
BseXI	GCAGC	2 cut(s)	117, 653
BsgI	GTGCAG	1 cut(s)	934
BshFI	GGCC	4 cut(s)	5, 222, 323, 1020
BshNI	GGYRCC	1 cut(s)	630
BshTI	ACCGGT	1 cut(s)	851
BsiSI	CCGG	5 cut(s)	153, 576, 804, 852, 1017
BsiWI	CGTACG	1 cut(s)	366
BslFI	GGGAC	2 cut(s)	26, 821
BsmAI	GTCTC	2 cut(s)	19, 151
BsmBI	CGTCTC	1 cut(s)	19
BsmFI	GGGAC	2 cut(s)	26, 821
BsnI	GGCC	4 cut(s)	5, 222, 323, 1020
Bsp1286I	GDGCHC	1 cut(s)	922
Bsp1407I	TGTACA	1 cut(s)	810
Bsp143I	GATC	3 cut(s)	618, 688, 934
Bsp1720I	GCTNAGC	1 cut(s)	47
BspACI	CCGC	4 cut(s)	9, 44, 66, 609
BspANI	GGCC	4 cut(s)	5, 222, 323, 1020
BspCNI	CTCAG	1 cut(s)	39
BspHI	TCATGA	4 cut(s)	327, 450, 564, 765
BspLI	GGNNCC	5 cut(s)	131, 474, 632, 721, 921
BspT107I	GGYRCC	1 cut(s)	630
BsrDI	GCAATG	2 cut(s)	399, 771
BsrFI	RCCGGY	1 cut(s)	851
BsrGI	TGTACA	1 cut(s)	810
BsrI	ACTGG	3 cut(s)	523, 920, 958
BssAI	RCCGGY	1 cut(s)	851
BssECI	CCNNGG	3 cut(s)	484, 802, 1015
BssMI	GATC	3 cut(s)	618, 688, 934
BssT1I	CCWWGG	1 cut(s)	484
Bst4CI	ACNGT	2 cut(s)	635, 736
Bst6I	CTCTTC	2 cut(s)	293, 683
BstAUI	TGTACA	1 cut(s)	810
BstBAI	YACGTR	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	458
BstDEI	CTNAG	2 cut(s)	47, 543
BstF5I	GGATG	3 cut(s)	149, 394, 885
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	2 cut(s)	353, 674
BstKTI	GATC	3 cut(s)	621, 691, 937
BstMAI	GTCTC	2 cut(s)	19, 151
BstMBI	GATC	3 cut(s)	618, 688, 934
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 66
BstSCI	CCNGG	3 cut(s)	152, 802, 1015
BstV1I	GCAGC	2 cut(s)	117, 653
BstV2I	GAAGAC	1 cut(s)	195
BsuRI	GGCC	4 cut(s)	5, 222, 323, 1020
BtsCI	GGATG	3 cut(s)	149, 394, 885
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	4 cut(s)	76, 530, 732, 951
Cac8I	GCNNGC	1 cut(s)	458
CaiI	CAGNNNCTG	1 cut(s)	704
CciI	TCATGA	4 cut(s)	327, 450, 564, 765
CfoI	GCGC	2 cut(s)	353, 674
Cfr10I	RCCGGY	1 cut(s)	851
Csp6I	GTAC	3 cut(s)	367, 631, 811
CspAI	ACCGGT	1 cut(s)	851
CviAII	CATG	9 cut(s)	319, 328, 373, 382, 415, 451, 565, 766, 1076
CviQI	GTAC	3 cut(s)	367, 631, 811
DdeI	CTNAG	2 cut(s)	47, 543
DpnI	GATC	3 cut(s)	620, 690, 936
DpnII	GATC	3 cut(s)	618, 688, 934
EaeI	YGGCCR	3 cut(s)	3, 321, 1018
Eam1104I	CTCTTC	2 cut(s)	293, 683
EarI	CTCTTC	2 cut(s)	293, 683
Eco130I	CCWWGG	1 cut(s)	484
Eco147I	AGGCCT	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	922
Eco32I	GATATC	1 cut(s)	649
Eco47III	AGCGCT	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	60
EcoRV	GATATC	1 cut(s)	649
EcoT14I	CCWWGG	1 cut(s)	484
EcoT38I	GRGCYC	1 cut(s)	922
ErhI	CCWWGG	1 cut(s)	484
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	9 cut(s)	322, 331, 376, 385, 418, 454, 568, 769, 1079
FaqI	GGGAC	2 cut(s)	26, 821
FatI	CATG	9 cut(s)	318, 327, 372, 381, 414, 450, 564, 765, 1075
FauI	CCCGC	2 cut(s)	51, 616
FbaI	TGATCA	1 cut(s)	618
Fnu4HI	GCNGC	3 cut(s)	67, 106, 642
FokI	GGATG	3 cut(s)	136, 401, 872
FriOI	GRGCYC	1 cut(s)	922
Fsp4HI	GCNGC	3 cut(s)	67, 106, 642
FspBI	CTAG	2 cut(s)	63, 1001
GlaI	GCGC	2 cut(s)	352, 673
GluI	GCNGC	3 cut(s)	67, 106, 642
GsuI	CTGGAG	1 cut(s)	621
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	4 cut(s)	5, 222, 323, 1020
HapII	CCGG	5 cut(s)	153, 576, 804, 852, 1017
HhaI	GCGC	2 cut(s)	353, 674
Hin1II	CATG	9 cut(s)	322, 331, 376, 385, 418, 454, 568, 769, 1079
Hin6I	GCGC	2 cut(s)	351, 672
HinP1I	GCGC	2 cut(s)	351, 672
HincII	GTYRAC	3 cut(s)	34, 754, 1006
HindII	GTYRAC	3 cut(s)	34, 754, 1006
HindIII	AAGCTT	2 cut(s)	91, 422
HinfI	GANTC	2 cut(s)	39, 552
HpaI	GTTAAC	1 cut(s)	754
HpaII	CCGG	5 cut(s)	153, 576, 804, 852, 1017
HphI	GGTGA	2 cut(s)	250, 841
Hpy166II	GTNNAC	6 cut(s)	34, 121, 433, 739, 754, 1006
Hpy188I	TCNGA	3 cut(s)	26, 241, 988
Hpy188III	TCNNGA	7 cut(s)	163, 328, 451, 565, 655, 692, 766
Hpy8I	GTNNAC	6 cut(s)	34, 121, 433, 739, 754, 1006
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	3 cut(s)	379, 652, 1021
HpyCH4III	ACNGT	2 cut(s)	635, 736
HpyCH4IV	ACGT	1 cut(s)	365
HpyCH4V	TGCA	3 cut(s)	227, 698, 951
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 66
HpyF3I	CTNAG	2 cut(s)	47, 543
HpySE526I	ACGT	1 cut(s)	365
Hsp92II	CATG	9 cut(s)	322, 331, 376, 385, 418, 454, 568, 769, 1079
HspAI	GCGC	2 cut(s)	351, 672
KpnI	GGTACC	1 cut(s)	634
Ksp22I	TGATCA	1 cut(s)	618
KspAI	GTTAAC	1 cut(s)	754
Kzo9I	GATC	3 cut(s)	618, 688, 934
LmnI	GCTCC	8 cut(s)	26, 156, 301, 409, 701, 804, 883, 925
Lsp1109I	GCAGC	2 cut(s)	117, 653
LweI	GCATC	1 cut(s)	685
MaeI	CTAG	2 cut(s)	63, 1001
MaeII	ACGT	1 cut(s)	365
MaeIII	GTNAC	3 cut(s)	847, 854, 1068
MalI	GATC	3 cut(s)	620, 690, 936
MboI	GATC	3 cut(s)	618, 688, 934
MboII	GAAGA	6 cut(s)	124, 200, 280, 670, 944, 952
MhlI	GDGCHC	1 cut(s)	922
MlsI	TGGCCA	2 cut(s)	5, 323
MluCI	AATT	2 cut(s)	581, 1047
MluNI	TGGCCA	2 cut(s)	5, 323
MlyI	GAGTC	1 cut(s)	48
Mox20I	TGGCCA	2 cut(s)	5, 323
MscI	TGGCCA	2 cut(s)	5, 323
MseI	TTAA	2 cut(s)	53, 753
MslI	CAYNNNNRTG	1 cut(s)	764
Msp20I	TGGCCA	2 cut(s)	5, 323
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	5 cut(s)	153, 576, 804, 852, 1017
MspR9I	CCNGG	3 cut(s)	154, 804, 1017
MwoI	GCNNNNNNNGC	2 cut(s)	57, 66
NciI	CCSGG	3 cut(s)	154, 804, 1017
NdeII	GATC	3 cut(s)	618, 688, 934
NlaIII	CATG	9 cut(s)	322, 331, 376, 385, 418, 454, 568, 769, 1079
NlaIV	GGNNCC	5 cut(s)	131, 474, 632, 721, 921
NmuCI	GTSAC	2 cut(s)	847, 1068
PagI	TCATGA	4 cut(s)	327, 450, 564, 765
PceI	AGGCCT	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	552
Pfl23II	CGTACG	1 cut(s)	366
PflFI	GACNNNGTC	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	152
PinAI	ACCGGT	1 cut(s)	851
PkrI	GCNGC	3 cut(s)	68, 107, 643
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
Ppu21I	YACGTR	1 cut(s)	366
PspLI	CGTACG	1 cut(s)	366
PspN4I	GGNNCC	5 cut(s)	131, 474, 632, 721, 921
PstNI	CAGNNNCTG	1 cut(s)	704
PsyI	GACNNNGTC	1 cut(s)	344
RsaI	GTAC	3 cut(s)	368, 632, 812
RsaNI	GTAC	3 cut(s)	367, 631, 811
RseI	CAYNNNNRTG	1 cut(s)	764
SaqAI	TTAA	2 cut(s)	53, 753
SatI	GCNGC	3 cut(s)	67, 106, 642
Sau3AI	GATC	3 cut(s)	618, 688, 934
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	3 cut(s)	154, 804, 1017
SduI	GDGCHC	1 cut(s)	922
SfaNI	GCATC	1 cut(s)	685
SmiMI	CAYNNNNRTG	1 cut(s)	764
SmlI	CTYRAG	2 cut(s)	88, 124
SmoI	CTYRAG	2 cut(s)	88, 124
Sse9I	AATT	2 cut(s)	581, 1047
SseBI	AGGCCT	1 cut(s)	222
SsiI	CCGC	4 cut(s)	9, 44, 66, 609
SspMI	CTAG	2 cut(s)	63, 1001
StuI	AGGCCT	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	152, 802, 1015
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	2 cut(s)	635, 736
TaiI	ACGT	1 cut(s)	368
TaqI	TCGA	1 cut(s)	183
TaqII	GACCGA	1 cut(s)	215
TasI	AATT	2 cut(s)	581, 1047
TatI	WGTACW	1 cut(s)	810
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	552
Tru1I	TTAA	2 cut(s)	53, 753
Tru9I	TTAA	2 cut(s)	53, 753
TscAI	CASTG	4 cut(s)	76, 530, 739, 958
TseFI	GTSAC	2 cut(s)	847, 1068
TseI	GCWGC	2 cut(s)	105, 641
Tsp45I	GTSAC	2 cut(s)	847, 1068
TspDTI	ATGAA	6 cut(s)	201, 398, 403, 439, 670, 782
TspGWI	ACGGA	2 cut(s)	324, 878
TspRI	CASTG	4 cut(s)	76, 530, 739, 958
Tth111I	GACNNNGTC	1 cut(s)	344
XspI	CTAG	2 cut(s)	63, 1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.