FvH4_3g41190

Bis(5'-adenosyl)-triphosphatase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
34655526 .. 34659362
3837 bp
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UTR
Exon/CDS
Intron
FvH4_3g41190.t3

Sequence Viewer

Length: 621 bp
ATGTCCCTGTCGACGTTGGCTTCCAGAATTGGGTTTCTCATTTCACATACATTTACCGGGAGAGCCCTCATCCCTACTCGTTTCTCCTCCACCAAGATGGCTTTGGAATCCTACAATTTTGGACCGTACAAAATCGACAGCAGGGAAGTGTTTTACAACACTAATCTGTCGTATGCCTTGGTTAATCTGCGCCCTGTTGTTCCTGGTCATATCCTTATTTGGTTTGAATTGAAATGTTGTTCTGGGTTAAGTAAGGCATTGTTTTGCTCATGGAAGTTGCGTGAAGTGAAGCGCTTTGTTGATCTCACCGTTGATGAGACCAGTGATCTTTGGCTCACAGCACAAAAGGTTGGCAGTCGGCTTGAGAGCTACCACAAAGCAACATCTCTAACACTTACGATTCAAGATGGTCCCCAAGCAGGGCAGACTGTACCTCATGTTCATATCCATATTCTTCCGCGCAAAGGTGGCGACTTTGAGAACAATGATGACATTTATGATGCACTCGATGAAAAGGAGAAGGAATTAAAGCAGAAGCTTGACTTGGATAAGGAGAGGAAGGACAGAAGCCTAGAGGAAATGGCACAAGAAGCGGAGGAATACAGAAAGCTCTTCTTATAG

Protein Analysis

207

Amino Acids

23.66

Weight (kDa)

6.6

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 11
AccII CGCG 1 cut(s) 460
AciI CCGC 2 cut(s) 458, 593
AfaI GTAC 2 cut(s) 128, 432
AfeI AGCGCT 1 cut(s) 293
AfiI CCNNNNNNNGG 4 cut(s) 30, 419, 420, 464
AgsI TTSAA 3 cut(s) 227, 232, 404
AjnI CCWGG 1 cut(s) 202
AjuI GAANNNNNNNTTGG 2 cut(s) 527, 559
AluBI AGCT 3 cut(s) 369, 538, 610
AluI AGCT 3 cut(s) 369, 538, 610
Alw26I GTCTC 1 cut(s) 311
Aor51HI AGCGCT 1 cut(s) 293
AspLEI GCGC 3 cut(s) 192, 294, 462
AspS9I GGNCC 2 cut(s) 122, 410
AsuC2I CCSGG 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 298
AvaII GGWCC 2 cut(s) 122, 410
BanII GRGCYC 1 cut(s) 67
BccI CCATC 2 cut(s) 91, 401
BciT130I CCWGG 1 cut(s) 204
BcnI CCSGG 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 1 cut(s) 572
BfoI RGCGCY 1 cut(s) 295
Bme1390I CCNGG 2 cut(s) 58, 204
Bme18I GGWCC 2 cut(s) 122, 410
BmgT120I GGNCC 2 cut(s) 122, 410
BmiI GGNNCC 1 cut(s) 412
BmrFI CCNGG 2 cut(s) 58, 204
BmsI GCATC 1 cut(s) 490
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 1 cut(s) 58
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 177
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 419, 420, 464
Bse1I ACTGG 1 cut(s) 321
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 1 cut(s) 69
BseLI CCNNNNNNNGG 4 cut(s) 30, 419, 420, 464
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 460
BsiSI CCGG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 4 cut(s) 30, 419, 420, 464
BsmAI GTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 396
Bso31I GGTCTC 1 cut(s) 311
Bsp1286I GDGCHC 1 cut(s) 67
Bsp143I GATC 2 cut(s) 301, 325
BspACI CCGC 2 cut(s) 458, 593
BspFNI CGCG 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 412
BspQI GCTCTTC 1 cut(s) 617
BspTNI GGTCTC 1 cut(s) 311
BsrI ACTGG 1 cut(s) 321
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 2 cut(s) 301, 325
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 3 cut(s) 126, 310, 430
Bst6I CTCTTC 1 cut(s) 617
BstF5I GGATG 1 cut(s) 69
BstFNI CGCG 1 cut(s) 460
BstH2I RGCGCY 1 cut(s) 295
BstHHI GCGC 3 cut(s) 192, 294, 462
BstKTI GATC 2 cut(s) 304, 328
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 2 cut(s) 301, 325
BstMWI GCNNNNNNNGC 2 cut(s) 468, 590
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 2 cut(s) 56, 202
BstUI CGCG 1 cut(s) 460
BstXI CCANNNNNNTGG 1 cut(s) 97
BtsCI GGATG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 328
CfoI GCGC 3 cut(s) 192, 294, 462
Cfr13I GGNCC 2 cut(s) 122, 410
Csp6I GTAC 2 cut(s) 127, 431
CviAII CATG 2 cut(s) 270, 437
CviJI RGCY 9 cut(s) 20, 65, 101, 334, 361, 369, 538, 570, 610
CviKI_1 RGCY 9 cut(s) 20, 65, 101, 334, 361, 369, 538, 570, 610
CviQI GTAC 2 cut(s) 127, 431
DpnI GATC 2 cut(s) 303, 327
DpnII GATC 2 cut(s) 301, 325
Eam1104I CTCTTC 1 cut(s) 617
EarI CTCTTC 1 cut(s) 617
Eco130I CCWWGG 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 67
Eco31I GGTCTC 1 cut(s) 311
Eco47I GGWCC 2 cut(s) 122, 410
Eco47III AGCGCT 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 177
EcoT38I GRGCYC 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 273, 440
FaiI YATR 9 cut(s) 48, 174, 210, 271, 438, 444, 450, 498, 619
FalI AAGNNNNNCTT 3 cut(s) 527, 559, 599
FaqI GGGAC 1 cut(s) 396
FatI CATG 2 cut(s) 269, 436
FblI GTMKAC 1 cut(s) 11
FokI GGATG 1 cut(s) 56
FriOI GRGCYC 1 cut(s) 67
FspBI CTAG 1 cut(s) 572
GlaI GCGC 3 cut(s) 191, 293, 461
HaeII RGCGCY 1 cut(s) 295
HapII CCGG 1 cut(s) 57
HhaI GCGC 3 cut(s) 192, 294, 462
Hin1II CATG 2 cut(s) 273, 440
Hin6I GCGC 3 cut(s) 190, 292, 460
HinP1I GCGC 3 cut(s) 190, 292, 460
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 536
HinfI GANTC 2 cut(s) 107, 400
HpaII CCGG 1 cut(s) 57
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 12
Hpy188III TCNNGA 2 cut(s) 24, 404
Hpy8I GTNNAC 1 cut(s) 12
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 2 cut(s) 514, 553
HpyCH4III ACNGT 3 cut(s) 126, 310, 430
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 1 cut(s) 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 468, 590
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 2 cut(s) 273, 440
HspAI GCGC 3 cut(s) 190, 292, 460
Kzo9I GATC 2 cut(s) 301, 325
LguI GCTCTTC 1 cut(s) 617
LweI GCATC 1 cut(s) 490
MaeI CTAG 1 cut(s) 572
MaeII ACGT 1 cut(s) 14
MalI GATC 2 cut(s) 303, 327
MboI GATC 2 cut(s) 301, 325
MboII GAAGA 2 cut(s) 446, 604
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 4 cut(s) 27, 115, 227, 524
MnlI CCTC 6 cut(s) 77, 97, 444, 549, 568, 589
MseI TTAA 3 cut(s) 183, 248, 527
MslI CAYNNNNRTG 1 cut(s) 95
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 2 cut(s) 58, 204
MvaI CCWGG 1 cut(s) 204
MvnI CGCG 1 cut(s) 460
MwoI GCNNNNNNNGC 2 cut(s) 468, 590
NciI CCSGG 1 cut(s) 58
NdeII GATC 2 cut(s) 301, 325
NlaIII CATG 2 cut(s) 273, 440
NlaIV GGNNCC 1 cut(s) 412
PciSI GCTCTTC 1 cut(s) 617
PfeI GAWTC 2 cut(s) 107, 400
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 412
PspPI GGNCC 2 cut(s) 122, 410
PsrI GAACNNNNNNTAC 2 cut(s) 423, 455
RsaI GTAC 2 cut(s) 128, 432
RsaNI GTAC 2 cut(s) 127, 431
RseI CAYNNNNRTG 1 cut(s) 95
SalI GTCGAC 1 cut(s) 10
SapI GCTCTTC 1 cut(s) 617
SaqAI TTAA 3 cut(s) 183, 248, 527
Sau3AI GATC 2 cut(s) 301, 325
Sau96I GGNCC 2 cut(s) 122, 410
ScrFI CCNGG 2 cut(s) 58, 204
SduI GDGCHC 1 cut(s) 67
SetI ASST 7 cut(s) 17, 351, 371, 436, 469, 540, 612
SfaNI GCATC 1 cut(s) 490
SinI GGWCC 2 cut(s) 122, 410
SmiMI CAYNNNNRTG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 4 cut(s) 27, 115, 227, 524
SsiI CCGC 2 cut(s) 458, 593
SspMI CTAG 1 cut(s) 572
StyD4I CCNGG 2 cut(s) 56, 202
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 3 cut(s) 126, 310, 430
TaiI ACGT 1 cut(s) 17
TaqI TCGA 3 cut(s) 11, 135, 507
TasI AATT 4 cut(s) 27, 115, 227, 524
TfiI GAWTC 2 cut(s) 107, 400
Tru1I TTAA 3 cut(s) 183, 248, 527
Tru9I TTAA 3 cut(s) 183, 248, 527
TscAI CASTG 1 cut(s) 328
TspDTI ATGAA 2 cut(s) 431, 525
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 2 cut(s) 122, 410
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 11
XspI CTAG 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.