Rroxscaffold_1G00007360

Bis(5'-adenosyl)-triphosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003566
Physical Location & Seq
Reverse (-)
9413303 .. 9415992
2690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00007360.1

Sequence Viewer

Length: 399 bp
ATGCCTTGGTTAATATGCGCCCTGTTGTTCCTGGTACATGTGCTTGTCTGCCCAAGGCGTGAAGTGAAGCGCTTTGCTGATCTCACTGTTGATGAGACCAGTGATCTTTGGATCACAGCACAAAAGGTTGGCAGTCGGCTTGAGAGCTACCACAAAGCAACATCTCTAACACTTACAATTCAAGATGGTCCCCAAGCAGGGCAGACTGTACCTCATGTTCATATCCATATCCTTCCGCGCAAAGGTGGTGACTTTGAGAACAATGATGAGATTTATGATGCACTCGATGAAAAGGAGAAGGAATTAAAGCAGAAGCTTGACTTGGATAAGGAGAGGAAGGACAGAAGCCTTGAGGAAATGGCACAAGAAGCAGAGGAATACAGAAAGCTTTTCTTGTAG

Protein Analysis

132

Amino Acids

15.34

Weight (kDa)

5.37

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIT PF01230 12 - 81 3.3e-20 HIT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 238
AciI CCGC 1 cut(s) 236
AclWI GGATC 1 cut(s) 119
AfaI GTAC 2 cut(s) 36, 210
AfeI AGCGCT 1 cut(s) 71
AfiI CCNNNNNNNGG 3 cut(s) 197, 198, 242
AflIII ACRYGT 1 cut(s) 37
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 1 cut(s) 30
AjuI GAANNNNNNNTTGG 2 cut(s) 305, 337
AluBI AGCT 3 cut(s) 147, 316, 388
AluI AGCT 3 cut(s) 147, 316, 388
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 1 cut(s) 119
Aor51HI AGCGCT 1 cut(s) 71
AspLEI GCGC 3 cut(s) 20, 72, 240
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 260
AvaII GGWCC 1 cut(s) 188
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 1 cut(s) 268
BpuEI CTTGAG 2 cut(s) 161, 371
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 5, 53
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 198, 242
Bse1I ACTGG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 2 cut(s) 5, 53
BseLI CCNNNNNNNGG 3 cut(s) 197, 198, 242
BseNI ACTGG 1 cut(s) 99
Bsh1236I CGCG 1 cut(s) 238
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 3 cut(s) 197, 198, 242
BsmAI GTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 174
Bso31I GGTCTC 1 cut(s) 89
Bsp143I GATC 3 cut(s) 79, 103, 111
BspACI CCGC 1 cut(s) 236
BspFNI CGCG 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 89
BsrI ACTGG 1 cut(s) 99
BssECI CCNNGG 2 cut(s) 5, 53
BssMI GATC 3 cut(s) 79, 103, 111
BssT1I CCWWGG 2 cut(s) 5, 53
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 2 cut(s) 88, 208
BstFNI CGCG 1 cut(s) 238
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 3 cut(s) 20, 72, 240
BstKTI GATC 3 cut(s) 82, 106, 114
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 3 cut(s) 79, 103, 111
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 30
BstUI CGCG 1 cut(s) 238
BtsIMutI CAGTG 2 cut(s) 84, 106
CfoI GCGC 3 cut(s) 20, 72, 240
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 35, 209
CviAII CATG 2 cut(s) 38, 215
CviJI RGCY 5 cut(s) 139, 147, 316, 348, 388
CviKI_1 RGCY 5 cut(s) 139, 147, 316, 348, 388
CviQI GTAC 2 cut(s) 35, 209
DpnI GATC 3 cut(s) 81, 105, 113
DpnII GATC 3 cut(s) 79, 103, 111
Eco130I CCWWGG 2 cut(s) 5, 53
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 188
Eco47III AGCGCT 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 30
EcoT14I CCWWGG 2 cut(s) 5, 53
ErhI CCWWGG 2 cut(s) 5, 53
FaeI CATG 2 cut(s) 41, 218
FaiI YATR 6 cut(s) 16, 39, 216, 222, 228, 276
FalI AAGNNNNNCTT 3 cut(s) 305, 337, 377
FaqI GGGAC 1 cut(s) 174
FatI CATG 2 cut(s) 37, 214
GlaI GCGC 3 cut(s) 19, 71, 239
HaeII RGCGCY 1 cut(s) 73
HhaI GCGC 3 cut(s) 20, 72, 240
Hin1II CATG 2 cut(s) 41, 218
Hin6I GCGC 3 cut(s) 18, 70, 238
HinP1I GCGC 3 cut(s) 18, 70, 238
HindIII AAGCTT 2 cut(s) 314, 386
HphI GGTGA 1 cut(s) 260
Hpy188III TCNNGA 1 cut(s) 182
HpyAV CCTTC 3 cut(s) 242, 292, 331
HpyCH4III ACNGT 2 cut(s) 88, 208
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
Hsp92II CATG 2 cut(s) 41, 218
HspAI GCGC 3 cut(s) 18, 70, 238
Kzo9I GATC 3 cut(s) 79, 103, 111
LpnPI CCDG 5 cut(s) 17, 35, 44, 112, 183
LweI GCATC 1 cut(s) 268
MaeIII GTNAC 1 cut(s) 248
MalI GATC 3 cut(s) 81, 105, 113
MboI GATC 3 cut(s) 79, 103, 111
MluCI AATT 2 cut(s) 177, 302
MnlI CCTC 4 cut(s) 222, 327, 346, 367
MseI TTAA 2 cut(s) 11, 305
MspR9I CCNGG 1 cut(s) 32
MvaI CCWGG 1 cut(s) 32
MvnI CGCG 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 368
NdeII GATC 3 cut(s) 79, 103, 111
NlaIII CATG 2 cut(s) 41, 218
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 248
NspI RCATGY 1 cut(s) 41
PciI ACATGT 1 cut(s) 37
PscI ACATGT 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 188
PsrI GAACNNNNNNTAC 2 cut(s) 201, 233
RsaI GTAC 2 cut(s) 36, 210
RsaNI GTAC 2 cut(s) 35, 209
SaqAI TTAA 2 cut(s) 11, 305
Sau3AI GATC 3 cut(s) 79, 103, 111
Sau96I GGNCC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 32
SetI ASST 6 cut(s) 129, 149, 214, 247, 318, 390
SfaNI GCATC 1 cut(s) 268
SinI GGWCC 1 cut(s) 188
SmlI CTYRAG 2 cut(s) 140, 350
SmoI CTYRAG 2 cut(s) 140, 350
Sse9I AATT 2 cut(s) 177, 302
SsiI CCGC 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 2 cut(s) 5, 53
TaaI ACNGT 2 cut(s) 88, 208
TaqI TCGA 1 cut(s) 285
TasI AATT 2 cut(s) 177, 302
Tru1I TTAA 2 cut(s) 11, 305
Tru9I TTAA 2 cut(s) 11, 305
TscAI CASTG 2 cut(s) 91, 106
TseFI GTSAC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 2 cut(s) 209, 303
TspRI CASTG 2 cut(s) 91, 106
VpaK11BI GGWCC 1 cut(s) 188
XceI RCATGY 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.