Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003566

Physical Location & Seq

Genomic Coordinates Forward (+)

46474454 .. 46475431

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57882

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCTTTGGAATCCCATACATTTGGATCATACAAAATCGACAGCAGGGAAGTGTTTTACGACACTAATCTATCGTATGCCTTGGTTAATTTGCGCTCTGTTGTTTCTGAATGCCAAAAGGTTGGCAGTCGGCTTGAGAGCTACCACAAAGCAACATCTCTAACACTGATGATTCAAGTAAGTAGCCAAGGCCTTTTGATTAATAAATTCGATTTTTTTTTTCTTCTGTTTGATCTGGTATTTAGTCAATTATTTTGCTCTGGATATCTGTTACTGAAATCACTTGTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016819 GO:0043530 GO:0044424 GO:0044444 GO:0044464 GO:0047627

KEGG Pathways

Metabolic & Signaling

ko00230 ko05222 ko05223 map00230 map05222 map05223

Pfam Domains

Protein Families

HIT

Protein Analysis

97

Amino Acids

11.08

Weight (kDa)

6.05

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58240 AT5G58240 AT5G58240
fragaria_vesca	FvH4_3g41190 FvH4_3g41190 FvH4_3g41190 FvH4_3g41230 FvH4_4g07220
malus_domestica	MD03G1046300.v1.1 MD03G1046400.v1.1 MD11G1049100.v1.1
prunus_persica	Prupe.6G037600_v2.0.a1
pyrus_communis	pycom11g03950
rosa_chinensis	RchiOBHm_Chr1g0353171 RchiOBHm_Chr2g0136141 RchiOBHm_Chr4g0393461 RchiOBHm_Chr5g0074021 RchiOBHm_Chr5g0074031 RchiOBHm_Chr5g0074041
rosa_laevigata	RLG00000036440 RLG00000036441
rosa_multiflora	Rmu_sc0004053.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007360
rosa_rugosa	Rorug05G0428400 Rorug05G0428500
rosa_samantha	Rh5AG485700 Rh5AG485800 Rh5BG505900 Rh5BG506000 Rh5CG529600 Rh5CG529700 Rh5DG518600 Rh5DG518700
rosa_wichuraiana	Rw5G045080 Rw5G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	206
AgsI	TTSAA	1 cut(s)	176
AluBI	AGCT	1 cut(s)	141
AluI	AGCT	1 cut(s)	141
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	190
ApoI	RAATTY	1 cut(s)	206
AseI	ATTAAT	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	81, 187
BseDI	CCNNGG	2 cut(s)	81, 187
BshFI	GGCC	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	26, 232
BspANI	GGCC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	34
BssECI	CCNNGG	2 cut(s)	81, 187
BssMI	GATC	2 cut(s)	26, 232
BssT1I	CCWWGG	2 cut(s)	81, 187
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	2 cut(s)	29, 235
BstMBI	GATC	2 cut(s)	26, 232
BstXI	CCANNNNNNTGG	2 cut(s)	23, 122
BsuRI	GGCC	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	164
CfoI	GCGC	1 cut(s)	96
CviJI	RGCY	5 cut(s)	5, 133, 141, 186, 192
CviKI_1	RGCY	5 cut(s)	5, 133, 141, 186, 192
DpnI	GATC	2 cut(s)	28, 234
DpnII	GATC	2 cut(s)	26, 232
Eco130I	CCWWGG	2 cut(s)	81, 187
Eco147I	AGGCCT	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	266
EcoRV	GATATC	1 cut(s)	266
EcoT14I	CCWWGG	2 cut(s)	81, 187
ErhI	CCWWGG	2 cut(s)	81, 187
FaiI	YATR	3 cut(s)	18, 31, 78
GlaI	GCGC	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	192
HhaI	GCGC	1 cut(s)	96
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	2 cut(s)	11, 172
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	261
Hpy8I	GTNNAC	1 cut(s)	289
HspAI	GCGC	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	26, 232
LpnPI	CCDG	3 cut(s)	31, 221, 246
MaeIII	GTNAC	1 cut(s)	270
MalI	GATC	2 cut(s)	28, 234
MboI	GATC	2 cut(s)	26, 232
MboII	GAAGA	1 cut(s)	215
MluCI	AATT	3 cut(s)	88, 206, 248
MseI	TTAA	2 cut(s)	87, 201
Mva1269I	GAATGC	1 cut(s)	116
NdeII	GATC	2 cut(s)	26, 232
PceI	AGGCCT	1 cut(s)	192
PctI	GAATGC	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	11, 172
PshBI	ATTAAT	1 cut(s)	201
SaqAI	TTAA	2 cut(s)	87, 201
Sau3AI	GATC	2 cut(s)	26, 232
SetI	ASST	2 cut(s)	123, 143
SgeI	CNNG	7 cut(s)	58, 94, 146, 188, 200, 248, 273
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	3 cut(s)	88, 206, 248
SseBI	AGGCCT	1 cut(s)	192
StuI	AGGCCT	1 cut(s)	192
StyI	CCWWGG	2 cut(s)	81, 187
TaqI	TCGA	2 cut(s)	39, 210
TasI	AATT	3 cut(s)	88, 206, 248
TfiI	GAWTC	2 cut(s)	11, 172
Tru1I	TTAA	2 cut(s)	87, 201
Tru9I	TTAA	2 cut(s)	87, 201
TscAI	CASTG	1 cut(s)	171
TspRI	CASTG	1 cut(s)	171
VspI	ATTAAT	1 cut(s)	201
XapI	RAATTY	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.