Rh5DG518600

Bis(5'-adenosyl)-triphosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003566
Physical Location & Seq
Forward (+)
80577928 .. 80578954
1027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG518600.1

Sequence Viewer

Length: 381 bp
ATGCCAACTATATGTGTAGCGGTTTTATGTGGAACCATGCGTGAAGTGAAGCGCTTTGCTGATCTGACTGTTGATGAGACCAGTGATCTTTGGATCACAGCACAAAAGGTTGGCAGTCGGCTTGAGAGCTACCACAAAGCAACATCTCTAACACTTACGATTCAAGATGGTCCCCAAGCAGGGCAGACTGTACCTCATGTTCATATCCATATCCTTCCGCGCAAAGGTGGTGACTTTGAGAACAATGATGAGATTTATGATGCACTCGATGAAAAGGAGAAGGAATTAAAGCAGAAGCTTGACTTGGATAAGGAGAGGAAGGACAGAAGCCTTGAGGAAATGGCACAAGAAGCAGAGGAATACAGAAAGCTTTTCTCGTAG

Protein Analysis

126

Amino Acids

14.43

Weight (kDa)

5.1

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIT PF01230 9 - 75 2.1e-15 HIT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 220
AciI CCGC 2 cut(s) 20, 218
AclWI GGATC 1 cut(s) 101
AfaI GTAC 1 cut(s) 192
AfeI AGCGCT 1 cut(s) 53
AfiI CCNNNNNNNGG 3 cut(s) 179, 180, 224
AgsI TTSAA 1 cut(s) 164
AjuI GAANNNNNNNTTGG 2 cut(s) 287, 319
AluBI AGCT 3 cut(s) 129, 298, 370
AluI AGCT 3 cut(s) 129, 298, 370
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 1 cut(s) 101
Aor51HI AGCGCT 1 cut(s) 53
AspLEI GCGC 2 cut(s) 54, 222
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 242
AvaII GGWCC 1 cut(s) 170
BccI CCATC 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 2 cut(s) 34, 172
BmsI GCATC 1 cut(s) 250
BpuEI CTTGAG 2 cut(s) 143, 353
BsaI GGTCTC 1 cut(s) 71
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 180, 224
Bse1I ACTGG 1 cut(s) 81
BseLI CCNNNNNNNGG 3 cut(s) 179, 180, 224
BseNI ACTGG 1 cut(s) 81
Bsh1236I CGCG 1 cut(s) 220
BslFI GGGAC 1 cut(s) 156
BslI CCNNNNNNNGG 3 cut(s) 179, 180, 224
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 156
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 3 cut(s) 61, 85, 93
BspACI CCGC 2 cut(s) 20, 218
BspFNI CGCG 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 34, 172
BspPI GGATC 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 71
BsrI ACTGG 1 cut(s) 81
BssMI GATC 3 cut(s) 61, 85, 93
Bst4CI ACNGT 2 cut(s) 70, 190
BstFNI CGCG 1 cut(s) 220
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 2 cut(s) 54, 222
BstKTI GATC 3 cut(s) 64, 88, 96
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 3 cut(s) 61, 85, 93
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstUI CGCG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 88
CfoI GCGC 2 cut(s) 54, 222
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 191
CviAII CATG 2 cut(s) 37, 197
CviJI RGCY 5 cut(s) 121, 129, 298, 330, 370
CviKI_1 RGCY 5 cut(s) 121, 129, 298, 330, 370
CviQI GTAC 1 cut(s) 191
DpnI GATC 3 cut(s) 63, 87, 95
DpnII GATC 3 cut(s) 61, 85, 93
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 170
Eco47III AGCGCT 1 cut(s) 53
FaeI CATG 2 cut(s) 40, 200
FaiI YATR 8 cut(s) 11, 13, 28, 38, 198, 204, 210, 258
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FaqI GGGAC 1 cut(s) 156
FatI CATG 2 cut(s) 36, 196
GlaI GCGC 2 cut(s) 53, 221
HaeII RGCGCY 1 cut(s) 55
HhaI GCGC 2 cut(s) 54, 222
Hin1II CATG 2 cut(s) 40, 200
Hin6I GCGC 2 cut(s) 52, 220
HinP1I GCGC 2 cut(s) 52, 220
HindIII AAGCTT 2 cut(s) 296, 368
HinfI GANTC 1 cut(s) 160
HphI GGTGA 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 1 cut(s) 164
HpyAV CCTTC 3 cut(s) 224, 274, 313
HpyCH4III ACNGT 2 cut(s) 70, 190
HpyCH4V TGCA 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
Hsp92II CATG 2 cut(s) 40, 200
HspAI GCGC 2 cut(s) 52, 220
Kzo9I GATC 3 cut(s) 61, 85, 93
LpnPI CCDG 2 cut(s) 94, 165
LweI GCATC 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 230
MalI GATC 3 cut(s) 63, 87, 95
MboI GATC 3 cut(s) 61, 85, 93
MluCI AATT 1 cut(s) 284
MnlI CCTC 4 cut(s) 204, 309, 328, 349
MseI TTAA 1 cut(s) 287
MvnI CGCG 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 350
NdeII GATC 3 cut(s) 61, 85, 93
NlaIII CATG 2 cut(s) 40, 200
NlaIV GGNNCC 2 cut(s) 34, 172
NmuCI GTSAC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 34, 172
PspPI GGNCC 1 cut(s) 170
PsrI GAACNNNNNNTAC 2 cut(s) 183, 215
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 287
Sau3AI GATC 3 cut(s) 61, 85, 93
Sau96I GGNCC 1 cut(s) 170
SetI ASST 6 cut(s) 111, 131, 196, 229, 300, 372
SfaNI GCATC 1 cut(s) 250
SinI GGWCC 1 cut(s) 170
SmlI CTYRAG 2 cut(s) 122, 332
SmoI CTYRAG 2 cut(s) 122, 332
Sse9I AATT 1 cut(s) 284
SsiI CCGC 2 cut(s) 20, 218
TaaI ACNGT 2 cut(s) 70, 190
TaqI TCGA 1 cut(s) 267
TasI AATT 1 cut(s) 284
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 191, 285
TspRI CASTG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.