Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0003566

Physical Location & Seq

Genomic Coordinates Reverse (-)

3727836 .. 3728363

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1046400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGCTTCGGAGAGCTTCAAGTTCGGGCCGTACAATATCGACAGTAGGGAAGTATTCTACTCCACCAAGCTATCCTACGCCCTGGTTAACCTGCGCCCTCTTGTTCCTGGTACTTTTCTCTTACTCTTAACACTGAATAATCAAAGCATGAAAATTGGATGTAGAAATTGCAAATTTGATGACCCAACTCTCCTTTTTCTTTGCAGGTCATATCCTTTTATTTGCTTTGGATATGAATTTTGTTTTGAGATCGGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko05222 ko05223 map00230 map05222 map05223

Pfam Domains

Protein Families

No domains found.

Protein Analysis

87

Amino Acids

9.95

Weight (kDa)

6.19

Isoelectric Point (pI)

50.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58240 AT5G58240 AT5G58240
fragaria_vesca	FvH4_3g41190 FvH4_3g41190 FvH4_3g41190 FvH4_3g41230 FvH4_4g07220
malus_domestica	MD03G1046300.v1.1 MD03G1046400.v1.1 MD11G1049100.v1.1
prunus_persica	Prupe.6G037600_v2.0.a1
pyrus_communis	pycom11g03950
rosa_chinensis	RchiOBHm_Chr1g0353171 RchiOBHm_Chr2g0136141 RchiOBHm_Chr4g0393461 RchiOBHm_Chr5g0074021 RchiOBHm_Chr5g0074031 RchiOBHm_Chr5g0074041
rosa_laevigata	RLG00000036440 RLG00000036441
rosa_multiflora	Rmu_sc0004053.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007360
rosa_rugosa	Rorug05G0428400 Rorug05G0428500
rosa_samantha	Rh5AG485700 Rh5AG485800 Rh5BG505900 Rh5BG506000 Rh5CG529600 Rh5CG529700 Rh5DG518600 Rh5DG518700
rosa_wichuraiana	Rw5G045080 Rw5G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	99, 195
AcsI	RAATTY	2 cut(s)	173, 236
AfaI	GTAC	2 cut(s)	32, 112
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	2 cut(s)	81, 106
AluBI	AGCT	2 cut(s)	15, 70
AluI	AGCT	2 cut(s)	15, 70
AoxI	GGCC	1 cut(s)	26
ApoI	RAATTY	2 cut(s)	173, 236
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	13
BciT130I	CCWGG	2 cut(s)	83, 108
BfuAI	ACCTGC	2 cut(s)	99, 195
Bme1390I	CCNGG	2 cut(s)	83, 108
BmgT120I	GGNCC	1 cut(s)	26
BmrFI	CCNGG	2 cut(s)	83, 108
BsaJI	CCNNGG	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	83, 108
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	28
Bsp143I	GATC	1 cut(s)	249
BspANI	GGCC	1 cut(s)	28
BspMI	ACCTGC	2 cut(s)	99, 195
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	83, 108
Bst4CI	ACNGT	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	249
BstNI	CCWGG	2 cut(s)	83, 108
BstSCI	CCNGG	2 cut(s)	81, 106
BsuRI	GGCC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	131
BveI	ACCTGC	2 cut(s)	99, 195
CfoI	GCGC	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	31, 111
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	4 cut(s)	5, 15, 28, 70
CviKI_1	RGCY	4 cut(s)	5, 15, 28, 70
CviQI	GTAC	2 cut(s)	31, 111
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
EcoRII	CCWGG	2 cut(s)	81, 106
FaeI	CATG	1 cut(s)	151
FaiI	YATR	3 cut(s)	149, 211, 234
FatI	CATG	1 cut(s)	147
FokI	GGATG	1 cut(s)	171
GlaI	GCGC	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HpaI	GTTAAC	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	10
Hpy8I	GTNNAC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	171, 204
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	1 cut(s)	94
KspAI	GTTAAC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	249
LpnPI	CCDG	6 cut(s)	68, 93, 95, 104, 120, 190
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MluCI	AATT	4 cut(s)	153, 166, 173, 236
MnlI	CCTC	1 cut(s)	108
MseI	TTAA	2 cut(s)	87, 128
MspR9I	CCNGG	2 cut(s)	83, 108
MvaI	CCWGG	2 cut(s)	83, 108
NdeII	GATC	1 cut(s)	249
NlaIII	CATG	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	81, 106
PspGI	CCWGG	2 cut(s)	81, 106
PspPI	GGNCC	1 cut(s)	26
RsaI	GTAC	2 cut(s)	32, 112
RsaNI	GTAC	2 cut(s)	31, 111
SaqAI	TTAA	2 cut(s)	87, 128
Sau3AI	GATC	1 cut(s)	249
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	83, 108
SetI	ASST	4 cut(s)	17, 72, 93, 209
Sse9I	AATT	4 cut(s)	153, 166, 173, 236
StyD4I	CCNGG	2 cut(s)	81, 106
TaaI	ACNGT	1 cut(s)	44
TaqI	TCGA	1 cut(s)	39
TasI	AATT	4 cut(s)	153, 166, 173, 236
Tru1I	TTAA	2 cut(s)	87, 128
Tru9I	TTAA	2 cut(s)	87, 128
TscAI	CASTG	1 cut(s)	138
TspDTI	ATGAA	2 cut(s)	164, 249
TspRI	CASTG	1 cut(s)	138
XapI	RAATTY	2 cut(s)	173, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.