FvH4_3g41230

Bis(5'-adenosyl)-triphosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003566
Physical Location & Seq
Forward (+)
34686375 .. 34688857
2483 bp
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UTR
Exon/CDS
Intron
FvH4_3g41230.t1

Sequence Viewer

Length: 435 bp
ATGGCTTTGGAGTCGTATACATTTGGGCCGTACAAAAAAGACAGCAGGGAAGTATTTTACAGCACTAACCTATCGTATGCCTTGGTTAATCTGCACCCTATTGTTCCTGTCAAAGCAATTGTTTTGCTTATGGAAGTTGGGAATTTTCTCAGTTTTAGTGCATTTGTGTTGCTTGTAAAGAACGCACAAAAGATTGGCATACGGCTTGAGAGCTACCACAAAGCAACATCTCTAACATTTGGGATTCAAGATGGTCCCCAAGCAGGGCAGACTGTACCCCATGTTCATATCCATATCTTTCCACGCAAAGATGATGCACTTGATGAGAAGGAGAAGAAATTAAAGAAGAAGCTTGACTTGGAAAAGGAGAGGAAGGATAGAAGCCTAGAGGAAATGACACGAGAAGCAGAGGAATACAGAAAGCTTTTCTTGTAG

Protein Analysis

145

Amino Acids

16.63

Weight (kDa)

9.0

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIT PF01230 16 - 104 4.7e-12 HIT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 17
AcsI RAATTY 1 cut(s) 142
AfaI GTAC 2 cut(s) 32, 276
AfiI CCNNNNNNNGG 2 cut(s) 263, 264
AgsI TTSAA 1 cut(s) 248
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AluBI AGCT 3 cut(s) 213, 352, 424
AluI AGCT 3 cut(s) 213, 352, 424
AoxI GGCC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 142
AspS9I GGNCC 2 cut(s) 26, 254
AvaII GGWCC 1 cut(s) 254
BauI CACGAG 1 cut(s) 399
BccI CCATC 1 cut(s) 245
BceAI ACGGC 2 cut(s) 13, 218
BfaI CTAG 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 2 cut(s) 26, 254
BmiI GGNNCC 1 cut(s) 256
BmsI GCATC 1 cut(s) 304
BpuEI CTTGAG 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 264
BseDI CCNNGG 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 263, 264
BseMII CTCAG 1 cut(s) 163
BsgI GTGCAG 1 cut(s) 77
BshFI GGCC 1 cut(s) 28
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 2 cut(s) 263, 264
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 1 cut(s) 28
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 81
BssNAI GTATAC 1 cut(s) 18
BssSI CACGAG 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 81
Bst1107I GTATAC 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 399
Bst4CI ACNGT 1 cut(s) 274
BstDEI CTNAG 1 cut(s) 149
BstZ17I GTATAC 1 cut(s) 18
BsuRI GGCC 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 26, 254
Csp6I GTAC 2 cut(s) 31, 275
CviAII CATG 1 cut(s) 281
CviJI RGCY 7 cut(s) 5, 28, 205, 213, 352, 384, 424
CviKI_1 RGCY 7 cut(s) 5, 28, 205, 213, 352, 384, 424
CviQI GTAC 2 cut(s) 31, 275
DdeI CTNAG 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 284
FaiI YATR 7 cut(s) 18, 78, 131, 200, 282, 288, 294
FalI AAGNNNNNCTT 3 cut(s) 341, 373, 413
FaqI GGGAC 1 cut(s) 240
FatI CATG 1 cut(s) 280
FblI GTMKAC 1 cut(s) 17
FspBI CTAG 1 cut(s) 386
HaeIII GGCC 1 cut(s) 28
Hin1II CATG 1 cut(s) 284
HindIII AAGCTT 2 cut(s) 350, 422
HinfI GANTC 2 cut(s) 11, 244
Hpy166II GTNNAC 1 cut(s) 18
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 18
HpyAV CCTTC 2 cut(s) 322, 367
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4V TGCA 3 cut(s) 94, 161, 317
HpyF3I CTNAG 1 cut(s) 149
Hsp92II CATG 1 cut(s) 284
LpnPI CCDG 3 cut(s) 31, 120, 249
LweI GCATC 1 cut(s) 304
MaeI CTAG 1 cut(s) 386
MboII GAAGA 2 cut(s) 346, 358
MfeI CAATTG 1 cut(s) 117
MluCI AATT 3 cut(s) 117, 142, 338
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 3 cut(s) 363, 382, 403
MseI TTAA 2 cut(s) 87, 341
MunI CAATTG 1 cut(s) 117
NlaIII CATG 1 cut(s) 284
NlaIV GGNNCC 1 cut(s) 256
PfeI GAWTC 1 cut(s) 244
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 2 cut(s) 26, 254
PsrI GAACNNNNNNTAC 2 cut(s) 267, 299
RsaI GTAC 2 cut(s) 32, 276
RsaNI GTAC 2 cut(s) 31, 275
SaqAI TTAA 2 cut(s) 87, 341
Sau96I GGNCC 2 cut(s) 26, 254
SchI GAGTC 1 cut(s) 20
SetI ASST 4 cut(s) 72, 215, 354, 426
SfaNI GCATC 1 cut(s) 304
SinI GGWCC 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 3 cut(s) 117, 142, 338
SspMI CTAG 1 cut(s) 386
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 274
TasI AATT 3 cut(s) 117, 142, 338
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 2 cut(s) 87, 341
Tru9I TTAA 2 cut(s) 87, 341
TspDTI ATGAA 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 1 cut(s) 142
XmiI GTMKAC 1 cut(s) 17
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.