RchiOBHm_Chr5g0074041

Bis(5'-adenosyl)-triphosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003566
Physical Location & Seq
Forward (+)
80072088 .. 80074457
2370 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34888

Sequence Viewer

Length: 408 bp
ATGGCTTTGGAGTCCTATACATTTGGGCCGTACAAAAAGGACAGCAGGGAAGTGTTTTACAGCACTAGTCTGTCGTATGCCTTGGTTAATCTGCGCCCTGTTGTTCCTGTGAAGCGCTTTGCTGATCTCACTGTTGATGAGACCAGTGATCTTTGGATCACAGCACAAAAGGTTGGCAGTCGGCTTGAGAGCTACCACAAAGCAACATCTCTAACATTTGGGATTCAAGATGGTCCCCAAGCAGGGCAGACTGTACCCCATGTTCATATTCATATCCTTCCACGCAAAGATGATACACTTGATGAAAAGGAGAAGAAGAAGAAGCTTGACTTGGAAAAGGAGAGGAAGGACAGAAGCCTAGAGGAAATGACACAAGAAGCAGAGGAATACAGAAAGCTTTTCTTGTAG

Protein Analysis

135

Amino Acids

15.65

Weight (kDa)

6.43

Isoelectric Point (pI)

52.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIT PF01230 26 - 97 4.2e-15 HIT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 164
AfaI GTAC 2 cut(s) 32, 255
AfeI AGCGCT 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 242, 243
AgsI TTSAA 1 cut(s) 227
AhlI ACTAGT 1 cut(s) 65
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 3 cut(s) 192, 325, 397
AluI AGCT 3 cut(s) 192, 325, 397
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 1 cut(s) 164
Aor51HI AGCGCT 1 cut(s) 116
AoxI GGCC 1 cut(s) 26
AspLEI GCGC 2 cut(s) 96, 117
AspS9I GGNCC 2 cut(s) 26, 233
AvaII GGWCC 1 cut(s) 233
BccI CCATC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 134
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 2 cut(s) 66, 359
BfoI RGCGCY 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 2 cut(s) 26, 233
BmiI GGNNCC 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 243
Bse1I ACTGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 242, 243
BseNI ACTGG 1 cut(s) 144
BshFI GGCC 1 cut(s) 28
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 2 cut(s) 242, 243
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 1 cut(s) 28
Bso31I GGTCTC 1 cut(s) 134
Bsp143I GATC 3 cut(s) 124, 148, 156
BspANI GGCC 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 134
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 3 cut(s) 124, 148, 156
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 133, 253
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 2 cut(s) 96, 117
BstKTI GATC 3 cut(s) 127, 151, 159
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 3 cut(s) 124, 148, 156
BsuRI GGCC 1 cut(s) 28
BtsIMutI CAGTG 2 cut(s) 129, 151
CfoI GCGC 2 cut(s) 96, 117
Cfr13I GGNCC 2 cut(s) 26, 233
Csp6I GTAC 2 cut(s) 31, 254
CviAII CATG 1 cut(s) 260
CviJI RGCY 7 cut(s) 5, 28, 184, 192, 325, 357, 397
CviKI_1 RGCY 7 cut(s) 5, 28, 184, 192, 325, 357, 397
CviQI GTAC 2 cut(s) 31, 254
DpnI GATC 3 cut(s) 126, 150, 158
DpnII GATC 3 cut(s) 124, 148, 156
Eco130I CCWWGG 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 233
Eco47III AGCGCT 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 263
FaiI YATR 5 cut(s) 18, 78, 261, 267, 273
FalI AAGNNNNNCTT 3 cut(s) 314, 346, 386
FaqI GGGAC 1 cut(s) 219
FatI CATG 1 cut(s) 259
FspBI CTAG 2 cut(s) 66, 359
GlaI GCGC 2 cut(s) 95, 116
HaeII RGCGCY 1 cut(s) 118
HaeIII GGCC 1 cut(s) 28
HhaI GCGC 2 cut(s) 96, 117
Hin1II CATG 1 cut(s) 263
Hin6I GCGC 2 cut(s) 94, 115
HinP1I GCGC 2 cut(s) 94, 115
HindIII AAGCTT 2 cut(s) 323, 395
HinfI GANTC 2 cut(s) 11, 223
Hpy188III TCNNGA 1 cut(s) 227
HpyAV CCTTC 2 cut(s) 287, 340
HpyCH4III ACNGT 2 cut(s) 133, 253
Hsp92II CATG 1 cut(s) 263
HspAI GCGC 2 cut(s) 94, 115
Kzo9I GATC 3 cut(s) 124, 148, 156
LpnPI CCDG 5 cut(s) 31, 111, 120, 157, 228
MaeI CTAG 2 cut(s) 66, 359
MalI GATC 3 cut(s) 126, 150, 158
MboI GATC 3 cut(s) 124, 148, 156
MboII GAAGA 3 cut(s) 325, 328, 331
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 3 cut(s) 336, 355, 376
MseI TTAA 1 cut(s) 87
NdeII GATC 3 cut(s) 124, 148, 156
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 1 cut(s) 235
PfeI GAWTC 1 cut(s) 223
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 2 cut(s) 26, 233
PsrI GAACNNNNNNTAC 2 cut(s) 246, 278
RsaI GTAC 2 cut(s) 32, 255
RsaNI GTAC 2 cut(s) 31, 254
SaqAI TTAA 1 cut(s) 87
Sau3AI GATC 3 cut(s) 124, 148, 156
Sau96I GGNCC 2 cut(s) 26, 233
SchI GAGTC 1 cut(s) 20
SetI ASST 4 cut(s) 174, 194, 327, 399
SinI GGWCC 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 65
SspMI CTAG 2 cut(s) 66, 359
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 133, 253
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 2 cut(s) 136, 151
TspDTI ATGAA 3 cut(s) 254, 260, 318
TspRI CASTG 2 cut(s) 136, 151
VpaK11BI GGWCC 1 cut(s) 233
XspI CTAG 2 cut(s) 66, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.