Rh5AG485700

Bis(5'-adenosyl)-triphosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003566
Physical Location & Seq
Forward (+)
82980060 .. 82981112
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG485700.1

Sequence Viewer

Length: 357 bp
ATGTACTTAAATTGGCGTGAAGTGAAGCGCTTTGCTGATCTGACTGTTGATGAGACCAGTGATCTTTGGATCACAGCACAAAAGGTTGGCAGTCGGCTTGAGAGCTACCACAAAGCAACATCTCTAACACTTACAATTCAAGATGGTCCCCAAGCAGGGCAGACTGTACCTCATGTTCATATCCATATCCTTCCGCGCAAAGGTGGTGACTTTGAGAACAATGATGAGATTTATGATGCACTCGATGAAAAGGAGAAGGAATTAAAGCAGAAGCTTGACTTGGATAAGGAAAGGAAGGACAGAAGCCTTGAGGAAATGGCACAAGAAGCAGAGGAATACAGAAAGCTTTTCTTGTAG

Protein Analysis

118

Amino Acids

13.85

Weight (kDa)

5.1

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIT PF01230 6 - 67 4.9e-15 HIT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 196
AciI CCGC 1 cut(s) 194
AclWI GGATC 1 cut(s) 77
AfaI GTAC 2 cut(s) 5, 168
AfeI AGCGCT 1 cut(s) 29
AfiI CCNNNNNNNGG 3 cut(s) 155, 156, 200
AgsI TTSAA 1 cut(s) 140
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 3 cut(s) 105, 274, 346
AluI AGCT 3 cut(s) 105, 274, 346
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 1 cut(s) 77
Aor51HI AGCGCT 1 cut(s) 29
AspLEI GCGC 2 cut(s) 30, 198
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 218
AvaII GGWCC 1 cut(s) 146
BccI CCATC 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 47
BfoI RGCGCY 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 148
BmsI GCATC 1 cut(s) 226
BpuEI CTTGAG 2 cut(s) 119, 329
BsaI GGTCTC 1 cut(s) 47
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 156, 200
Bse1I ACTGG 1 cut(s) 57
BseLI CCNNNNNNNGG 3 cut(s) 155, 156, 200
BseNI ACTGG 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 196
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 3 cut(s) 155, 156, 200
BsmAI GTCTC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 132
Bso31I GGTCTC 1 cut(s) 47
Bsp143I GATC 3 cut(s) 37, 61, 69
BspACI CCGC 1 cut(s) 194
BspFNI CGCG 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 148
BspPI GGATC 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 47
BsrI ACTGG 1 cut(s) 57
BssMI GATC 3 cut(s) 37, 61, 69
Bst4CI ACNGT 2 cut(s) 46, 166
BstFNI CGCG 1 cut(s) 196
BstH2I RGCGCY 1 cut(s) 31
BstHHI GCGC 2 cut(s) 30, 198
BstKTI GATC 3 cut(s) 40, 64, 72
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 3 cut(s) 37, 61, 69
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstUI CGCG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 64
CfoI GCGC 2 cut(s) 30, 198
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 2 cut(s) 4, 167
CviAII CATG 1 cut(s) 173
CviJI RGCY 5 cut(s) 97, 105, 274, 306, 346
CviKI_1 RGCY 5 cut(s) 97, 105, 274, 306, 346
CviQI GTAC 2 cut(s) 4, 167
DpnI GATC 3 cut(s) 39, 63, 71
DpnII GATC 3 cut(s) 37, 61, 69
Eco31I GGTCTC 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 146
Eco47III AGCGCT 1 cut(s) 29
FaeI CATG 1 cut(s) 176
FaiI YATR 4 cut(s) 174, 180, 186, 234
FalI AAGNNNNNCTT 3 cut(s) 263, 295, 335
FaqI GGGAC 1 cut(s) 132
FatI CATG 1 cut(s) 172
GlaI GCGC 2 cut(s) 29, 197
HaeII RGCGCY 1 cut(s) 31
HhaI GCGC 2 cut(s) 30, 198
Hin1II CATG 1 cut(s) 176
Hin6I GCGC 2 cut(s) 28, 196
HinP1I GCGC 2 cut(s) 28, 196
HindIII AAGCTT 2 cut(s) 272, 344
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 1 cut(s) 140
HpyAV CCTTC 3 cut(s) 200, 250, 289
HpyCH4III ACNGT 2 cut(s) 46, 166
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
Hsp92II CATG 1 cut(s) 176
HspAI GCGC 2 cut(s) 28, 196
Kzo9I GATC 3 cut(s) 37, 61, 69
LpnPI CCDG 2 cut(s) 70, 141
LweI GCATC 1 cut(s) 226
MaeIII GTNAC 1 cut(s) 206
MalI GATC 3 cut(s) 39, 63, 71
MboI GATC 3 cut(s) 37, 61, 69
MluCI AATT 3 cut(s) 10, 135, 260
MnlI CCTC 3 cut(s) 180, 304, 325
MseI TTAA 2 cut(s) 8, 263
MvnI CGCG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 326
NdeII GATC 3 cut(s) 37, 61, 69
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 1 cut(s) 146
PsrI GAACNNNNNNTAC 2 cut(s) 159, 191
RsaI GTAC 2 cut(s) 5, 168
RsaNI GTAC 2 cut(s) 4, 167
SaqAI TTAA 2 cut(s) 8, 263
Sau3AI GATC 3 cut(s) 37, 61, 69
Sau96I GGNCC 1 cut(s) 146
SetI ASST 6 cut(s) 87, 107, 172, 205, 276, 348
SfaNI GCATC 1 cut(s) 226
SinI GGWCC 1 cut(s) 146
SmlI CTYRAG 2 cut(s) 98, 308
SmoI CTYRAG 2 cut(s) 98, 308
Sse9I AATT 3 cut(s) 10, 135, 260
SsiI CCGC 1 cut(s) 194
TaaI ACNGT 2 cut(s) 46, 166
TaqI TCGA 1 cut(s) 243
TasI AATT 3 cut(s) 10, 135, 260
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 2 cut(s) 8, 263
Tru9I TTAA 2 cut(s) 8, 263
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 2 cut(s) 167, 261
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.