Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003566

Physical Location & Seq

Genomic Coordinates Forward (+)

82982940 .. 82984237

Gene Structure 1298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG485800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCTTATCTGCCCAAGGCGTGAAGTGAAGCGCTTTGCTGATCTCACTGTTGATGAGACCAGTGATCTTTGGATCACAGCACAAAAGGTTGGCAGTCGGCTTGAGAGCTACCACAAAGCAACATCTCTAACATTTGGGATTCAAGATGGTCCCCAAGCAGGGCAGACTGTACCCCATGTTCATATCCATATCCTTCCACGCAAAGACGATACACTTGATGAAAAGGAGAAGAAGAAGAAGCTTGACTTGGAAAAGGAGAGGAAGGACAGAAGCCTAGAGGAAATGACACAAGAAGCAGAGGAATACAGAAAGCTTTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016819 GO:0043530 GO:0044424 GO:0044444 GO:0044464 GO:0047627

KEGG Pathways

Metabolic & Signaling

ko00230 ko05222 ko05223 map00230 map05222 map05223

Pfam Domains

Protein Families

HIT

Protein Analysis

107

Amino Acids

12.54

Weight (kDa)

6.43

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIT	PF01230	1 - 69	3.5e-18	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58240 AT5G58240 AT5G58240
fragaria_vesca	FvH4_3g41190 FvH4_3g41190 FvH4_3g41190 FvH4_3g41230 FvH4_4g07220
malus_domestica	MD03G1046300.v1.1 MD03G1046400.v1.1 MD11G1049100.v1.1
prunus_persica	Prupe.6G037600_v2.0.a1
pyrus_communis	pycom11g03950
rosa_chinensis	RchiOBHm_Chr1g0353171 RchiOBHm_Chr2g0136141 RchiOBHm_Chr4g0393461 RchiOBHm_Chr5g0074021 RchiOBHm_Chr5g0074031 RchiOBHm_Chr5g0074041
rosa_laevigata	RLG00000036440 RLG00000036441
rosa_multiflora	Rmu_sc0004053.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007360
rosa_rugosa	Rorug05G0428400 Rorug05G0428500
rosa_samantha	Rh5AG485700 Rh5AG485800 Rh5BG505900 Rh5BG506000 Rh5CG529600 Rh5CG529700 Rh5DG518600 Rh5DG518700
rosa_wichuraiana	Rw5G045080 Rw5G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	80
AfaI	GTAC	1 cut(s)	171
AfeI	AGCGCT	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	158, 159
AgsI	TTSAA	1 cut(s)	143
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	3 cut(s)	108, 241, 313
AluI	AGCT	3 cut(s)	108, 241, 313
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	80
Aor51HI	AGCGCT	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	149
BccI	CCATC	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	275
BfoI	RGCGCY	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 159
Bse1I	ACTGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	158, 159
BseNI	ACTGG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	158, 159
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	135
Bso31I	GGTCTC	1 cut(s)	50
Bsp143I	GATC	3 cut(s)	40, 64, 72
BspLI	GGNNCC	1 cut(s)	151
BspPI	GGATC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	3 cut(s)	40, 64, 72
BssT1I	CCWWGG	1 cut(s)	14
Bst4CI	ACNGT	2 cut(s)	49, 169
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	3 cut(s)	43, 67, 75
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	3 cut(s)	40, 64, 72
BtsIMutI	CAGTG	2 cut(s)	45, 67
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	170
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	5 cut(s)	100, 108, 241, 273, 313
CviKI_1	RGCY	5 cut(s)	100, 108, 241, 273, 313
CviQI	GTAC	1 cut(s)	170
DpnI	GATC	3 cut(s)	42, 66, 74
DpnII	GATC	3 cut(s)	40, 64, 72
Eco130I	CCWWGG	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	149
Eco47III	AGCGCT	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	1 cut(s)	179
FaiI	YATR	3 cut(s)	177, 183, 189
FalI	AAGNNNNNCTT	3 cut(s)	230, 262, 302
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	1 cut(s)	175
FspBI	CTAG	1 cut(s)	275
GlaI	GCGC	1 cut(s)	32
HaeII	RGCGCY	1 cut(s)	34
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HindIII	AAGCTT	2 cut(s)	239, 311
HinfI	GANTC	1 cut(s)	139
Hpy188III	TCNNGA	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	203, 256
HpyCH4III	ACNGT	2 cut(s)	49, 169
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	31
Kzo9I	GATC	3 cut(s)	40, 64, 72
LpnPI	CCDG	2 cut(s)	73, 144
MaeI	CTAG	1 cut(s)	275
MalI	GATC	3 cut(s)	42, 66, 74
MboI	GATC	3 cut(s)	40, 64, 72
MboII	GAAGA	3 cut(s)	241, 244, 247
MnlI	CCTC	3 cut(s)	252, 271, 292
NdeII	GATC	3 cut(s)	40, 64, 72
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	151
PspPI	GGNCC	1 cut(s)	149
PsrI	GAACNNNNNNTAC	2 cut(s)	162, 194
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
Sau3AI	GATC	3 cut(s)	40, 64, 72
Sau96I	GGNCC	1 cut(s)	149
SetI	ASST	4 cut(s)	90, 110, 243, 315
SinI	GGWCC	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SspMI	CTAG	1 cut(s)	275
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	2 cut(s)	49, 169
TfiI	GAWTC	1 cut(s)	139
TscAI	CASTG	2 cut(s)	52, 67
TspDTI	ATGAA	2 cut(s)	170, 234
TspRI	CASTG	2 cut(s)	52, 67
VpaK11BI	GGWCC	1 cut(s)	149
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.