RchiOBHm_Chr5g0074021

Bis(5'-adenosyl)-triphosphatase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
80068837 .. 80069951
1115 bp
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UTR
Exon/CDS
Intron
PRQ34886

Sequence Viewer

Length: 243 bp
ATGTCAGTCTCGACATTGGCTTCCAGAGTTGGGTTTCTCATTTCACGTTCATCTACAAGCAGAGGCCTCATCCCTACTCGTTTCTTCTCCACCAAGATGGCTTTGGAATCCTACACATTTGGACCGTACAAAATCGACAGCAGGGAAGTGTTTTACAACACTAATCTATCGTATGCCTTGGTTAATATGCGCCCTGTTGTTCCTGGTACCGTTTTTACTCTCTTACACTTGTTTAGAACATAG

Protein Analysis

80

Amino Acids

9.05

Weight (kDa)

10.58

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 206
AfaI GTAC 2 cut(s) 128, 208
AfiI CCNNNNNNNGG 1 cut(s) 30
AjnI CCWGG 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 13
AoxI GGCC 1 cut(s) 64
Asp718I GGTACC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 122
AvaII GGWCC 1 cut(s) 122
BanI GGYRCC 1 cut(s) 206
BccI CCATC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 30
BshFI GGCC 1 cut(s) 66
BshNI GGYRCC 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 13
BsnI GGCC 1 cut(s) 66
BspANI GGCC 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 208
BspT107I GGYRCC 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 126, 211
BstF5I GGATG 1 cut(s) 69
BstHHI GCGC 1 cut(s) 192
BstMAI GTCTC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BstXI CCANNNNNNTGG 1 cut(s) 97
BsuRI GGCC 1 cut(s) 66
BtsCI GGATG 1 cut(s) 69
CfoI GCGC 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 2 cut(s) 127, 207
CviJI RGCY 3 cut(s) 20, 66, 101
CviKI_1 RGCY 3 cut(s) 20, 66, 101
CviQI GTAC 2 cut(s) 127, 207
Eco130I CCWWGG 1 cut(s) 177
Eco147I AGGCCT 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaiI YATR 3 cut(s) 174, 188, 241
FokI GGATG 1 cut(s) 56
GlaI GCGC 1 cut(s) 191
HaeIII GGCC 1 cut(s) 66
HhaI GCGC 1 cut(s) 192
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HinfI GANTC 1 cut(s) 107
Hpy188III TCNNGA 2 cut(s) 10, 24
HpyCH4III ACNGT 2 cut(s) 126, 211
HpyCH4IV ACGT 1 cut(s) 46
HpySE526I ACGT 1 cut(s) 46
HspAI GCGC 1 cut(s) 190
KpnI GGTACC 1 cut(s) 210
LpnPI CCDG 5 cut(s) 37, 127, 189, 207, 216
MaeII ACGT 1 cut(s) 46
MboII GAAGA 1 cut(s) 76
MnlI CCTC 2 cut(s) 56, 77
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
NlaIV GGNNCC 1 cut(s) 208
PceI AGGCCT 1 cut(s) 66
PfeI GAWTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 122
RsaI GTAC 2 cut(s) 128, 208
RsaNI GTAC 2 cut(s) 127, 207
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 1 cut(s) 183
Sau96I GGNCC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 204
SetI ASST 1 cut(s) 49
SinI GGWCC 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 95
SseBI AGGCCT 1 cut(s) 66
StuI AGGCCT 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 202
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 126, 211
TaiI ACGT 1 cut(s) 49
TaqI TCGA 2 cut(s) 11, 135
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TspDTI ATGAA 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 122
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.