Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003566

Physical Location & Seq

Genomic Coordinates Forward (+)

74083971 .. 74084992

Gene Structure 1022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG529700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAACTTAAATTGGCGTGAAGTGAAGCGCTTTGCTGATCTCACTGTTGATGAGATCAGTGATCTTTGGATCACAGCACAAAAGGTTGGCAGTCGGCTTGAGAGCTACCACAAAGTAACATCTCTAACATTTGGGATTCAAGATGGTCCTCAAGCAGGGCAGACTGTACCCCATGTTCATATCCATATCCTTCCACGCAAAGATGATACACTTGATGAAAAGGAGAAGAAGAAGAAGCTTGACTTGGAAAAGGAGAGGAAGGACAGAAGCCTAGAGGAAATGACACAAGAAGCAGAGGAATACAGAAAGCTTTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016819 GO:0043530 GO:0044424 GO:0044444 GO:0044464 GO:0047627

KEGG Pathways

Metabolic & Signaling

ko00230 ko05222 ko05223 map00230 map05222 map05223

Pfam Domains

Protein Families

HIT

Protein Analysis

106

Amino Acids

12.52

Weight (kDa)

6.09

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIT	PF01230	6 - 68	1.7e-14	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58240 AT5G58240 AT5G58240
fragaria_vesca	FvH4_3g41190 FvH4_3g41190 FvH4_3g41190 FvH4_3g41230 FvH4_4g07220
malus_domestica	MD03G1046300.v1.1 MD03G1046400.v1.1 MD11G1049100.v1.1
prunus_persica	Prupe.6G037600_v2.0.a1
pyrus_communis	pycom11g03950
rosa_chinensis	RchiOBHm_Chr1g0353171 RchiOBHm_Chr2g0136141 RchiOBHm_Chr4g0393461 RchiOBHm_Chr5g0074021 RchiOBHm_Chr5g0074031 RchiOBHm_Chr5g0074041
rosa_laevigata	RLG00000036440 RLG00000036441
rosa_multiflora	Rmu_sc0004053.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007360
rosa_rugosa	Rorug05G0428400 Rorug05G0428500
rosa_samantha	Rh5AG485700 Rh5AG485800 Rh5BG505900 Rh5BG506000 Rh5CG529600 Rh5CG529700 Rh5DG518600 Rh5DG518700
rosa_wichuraiana	Rw5G045080 Rw5G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	77
AfaI	GTAC	1 cut(s)	168
AfeI	AGCGCT	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	140
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	3 cut(s)	105, 238, 310
AluI	AGCT	3 cut(s)	105, 238, 310
AlwI	GGATC	1 cut(s)	77
Aor51HI	AGCGCT	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	146
BccI	CCATC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	272
BfoI	RGCGCY	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BpuEI	CTTGAG	2 cut(s)	119, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	155
Bsp143I	GATC	4 cut(s)	37, 54, 61, 69
BspPI	GGATC	1 cut(s)	77
BssMI	GATC	4 cut(s)	37, 54, 61, 69
Bst4CI	ACNGT	2 cut(s)	46, 166
BstENI	CCTNNNNNAGG	1 cut(s)	153
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	4 cut(s)	40, 57, 64, 72
BstMBI	GATC	4 cut(s)	37, 54, 61, 69
BtsIMutI	CAGTG	2 cut(s)	42, 64
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	5 cut(s)	97, 105, 238, 270, 310
CviKI_1	RGCY	5 cut(s)	97, 105, 238, 270, 310
CviQI	GTAC	1 cut(s)	167
DpnI	GATC	4 cut(s)	39, 56, 63, 71
DpnII	GATC	4 cut(s)	37, 54, 61, 69
Eco47I	GGWCC	1 cut(s)	146
Eco47III	AGCGCT	1 cut(s)	29
EcoNI	CCTNNNNNAGG	1 cut(s)	153
FaeI	CATG	1 cut(s)	176
FaiI	YATR	3 cut(s)	174, 180, 186
FalI	AAGNNNNNCTT	3 cut(s)	227, 259, 299
FatI	CATG	1 cut(s)	172
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	1 cut(s)	29
HaeII	RGCGCY	1 cut(s)	31
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HindIII	AAGCTT	2 cut(s)	236, 308
HinfI	GANTC	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	200, 253
HpyCH4III	ACNGT	2 cut(s)	46, 166
Hsp92II	CATG	1 cut(s)	176
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	4 cut(s)	37, 54, 61, 69
LpnPI	CCDG	1 cut(s)	141
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	4 cut(s)	39, 56, 63, 71
MboI	GATC	4 cut(s)	37, 54, 61, 69
MboII	GAAGA	3 cut(s)	238, 241, 244
MluCI	AATT	1 cut(s)	10
MnlI	CCTC	4 cut(s)	159, 249, 268, 289
MseI	TTAA	1 cut(s)	8
NdeII	GATC	4 cut(s)	37, 54, 61, 69
NlaIII	CATG	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	146
PsrI	GAACNNNNNNTAC	2 cut(s)	159, 191
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	8
Sau3AI	GATC	4 cut(s)	37, 54, 61, 69
Sau96I	GGNCC	1 cut(s)	146
SetI	ASST	4 cut(s)	87, 107, 240, 312
SinI	GGWCC	1 cut(s)	146
SmlI	CTYRAG	2 cut(s)	98, 150
SmoI	CTYRAG	2 cut(s)	98, 150
Sse9I	AATT	1 cut(s)	10
SspMI	CTAG	1 cut(s)	272
TaaI	ACNGT	2 cut(s)	46, 166
TasI	AATT	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	2 cut(s)	49, 64
TspDTI	ATGAA	3 cut(s)	17, 167, 231
TspRI	CASTG	2 cut(s)	49, 64
VpaK11BI	GGWCC	1 cut(s)	146
XagI	CCTNNNNNAGG	1 cut(s)	153
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.