Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003566

Physical Location & Seq

Genomic Coordinates Forward (+)

78947717 .. 78949851

Gene Structure 2135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G045080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTCAGTCTCGACATTGGCTTCCAGAGTTGGGTTTCTCATTTCAAGTTCATTACAAGCAGAGGCCTCATCCCTACTCATGGCTTTGGAATCCTACACATTTGGACCGTACAAAATCGACAGTAGGGAAGTGTTTTACAACACTAATCTATCGTATGCCTTGGTTAATATGCGCCCTGTTGTTCCTGTGAAGCGCTTTGCTGATTTGACTGTTGATGAGACCAGTGATCTTTGGATCACAGCACAAAAGGTTGGCAGTCGGCTTGAGAGCTACCACAAAGCAACATCTCTAACACTTACAATTCAAGATGGTCCCCAAGCAGGGCAGACTGTACCTCATGTTCATATCCATATCCTTCCGCGCAAAGGTGGTGACTTTGAGAACAATGATGAGATTTATGATGCACTCGATGAAAAGGAGAAGGAATTAAAGCAGAAGCTTGACTTGGATAAGGAGAGGAAGGACAGAAGCCTTGAGGAAATGGCAAAAGAAGCAGAGGAATACAGAAAGCTTTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016819 GO:0043530 GO:0044424 GO:0044444 GO:0044464 GO:0047627

KEGG Pathways

Metabolic & Signaling

ko00230 ko05222 ko05223 map00230 map05222 map05223

Pfam Domains

Protein Families

HIT

Protein Analysis

173

Amino Acids

19.66

Weight (kDa)

5.29

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIT	PF01230	43 - 122	1.8e-15	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58240 AT5G58240 AT5G58240
fragaria_vesca	FvH4_3g41190 FvH4_3g41190 FvH4_3g41190 FvH4_3g41230 FvH4_4g07220
malus_domestica	MD03G1046300.v1.1 MD03G1046400.v1.1 MD11G1049100.v1.1
prunus_persica	Prupe.6G037600_v2.0.a1
pyrus_communis	pycom11g03950
rosa_chinensis	RchiOBHm_Chr1g0353171 RchiOBHm_Chr2g0136141 RchiOBHm_Chr4g0393461 RchiOBHm_Chr5g0074021 RchiOBHm_Chr5g0074031 RchiOBHm_Chr5g0074041
rosa_laevigata	RLG00000036440 RLG00000036441
rosa_multiflora	Rmu_sc0004053.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007360
rosa_rugosa	Rorug05G0428400 Rorug05G0428500
rosa_samantha	Rh5AG485700 Rh5AG485800 Rh5BG505900 Rh5BG506000 Rh5CG529600 Rh5CG529700 Rh5DG518600 Rh5DG518700
rosa_wichuraiana	Rw5G045080 Rw5G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	361
AciI	CCGC	1 cut(s)	359
AclWI	GGATC	1 cut(s)	242
AfaI	GTAC	2 cut(s)	110, 333
AfeI	AGCGCT	1 cut(s)	194
AfiI	CCNNNNNNNGG	5 cut(s)	30, 79, 320, 321, 365
AgsI	TTSAA	2 cut(s)	45, 305
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AluBI	AGCT	3 cut(s)	270, 439, 511
AluI	AGCT	3 cut(s)	270, 439, 511
Alw26I	GTCTC	2 cut(s)	13, 212
AlwI	GGATC	1 cut(s)	242
Aor51HI	AGCGCT	1 cut(s)	194
AoxI	GGCC	1 cut(s)	63
AspLEI	GCGC	3 cut(s)	174, 195, 363
AspS9I	GGNCC	2 cut(s)	104, 311
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	2 cut(s)	104, 311
BccI	CCATC	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	13, 212
BfoI	RGCGCY	1 cut(s)	196
Bme18I	GGWCC	2 cut(s)	104, 311
BmgT120I	GGNCC	2 cut(s)	104, 311
BmiI	GGNNCC	1 cut(s)	313
BmsI	GCATC	1 cut(s)	391
BpuEI	CTTGAG	2 cut(s)	284, 494
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	5 cut(s)	30, 79, 320, 321, 365
Bse1I	ACTGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	68
BseLI	CCNNNNNNNGG	5 cut(s)	30, 79, 320, 321, 365
BseNI	ACTGG	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	361
BshFI	GGCC	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	5 cut(s)	30, 79, 320, 321, 365
BsmAI	GTCTC	2 cut(s)	13, 212
BsmFI	GGGAC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	65
Bso31I	GGTCTC	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	226, 234
BspACI	CCGC	1 cut(s)	359
BspANI	GGCC	1 cut(s)	65
BspFNI	CGCG	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	313
BspPI	GGATC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	226, 234
BssT1I	CCWWGG	1 cut(s)	159
Bst4CI	ACNGT	4 cut(s)	108, 122, 211, 331
BstF5I	GGATG	1 cut(s)	68
BstFNI	CGCG	1 cut(s)	361
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	3 cut(s)	174, 195, 363
BstKTI	GATC	2 cut(s)	229, 237
BstMAI	GTCTC	2 cut(s)	13, 212
BstMBI	GATC	2 cut(s)	226, 234
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstUI	CGCG	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	229
CfoI	GCGC	3 cut(s)	174, 195, 363
Cfr13I	GGNCC	2 cut(s)	104, 311
Csp6I	GTAC	2 cut(s)	109, 332
CviAII	CATG	2 cut(s)	79, 338
CviJI	RGCY	8 cut(s)	20, 65, 83, 262, 270, 439, 471, 511
CviKI_1	RGCY	8 cut(s)	20, 65, 83, 262, 270, 439, 471, 511
CviQI	GTAC	2 cut(s)	109, 332
DpnI	GATC	2 cut(s)	228, 236
DpnII	GATC	2 cut(s)	226, 234
Eco130I	CCWWGG	1 cut(s)	159
Eco147I	AGGCCT	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	2 cut(s)	104, 311
Eco47III	AGCGCT	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	2 cut(s)	82, 341
FaiI	YATR	7 cut(s)	80, 156, 170, 339, 345, 351, 399
FalI	AAGNNNNNCTT	3 cut(s)	428, 460, 500
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	2 cut(s)	78, 337
FokI	GGATG	1 cut(s)	55
GlaI	GCGC	3 cut(s)	173, 194, 362
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	65
HhaI	GCGC	3 cut(s)	174, 195, 363
Hin1II	CATG	2 cut(s)	82, 341
Hin6I	GCGC	3 cut(s)	172, 193, 361
HinP1I	GCGC	3 cut(s)	172, 193, 361
HindIII	AAGCTT	2 cut(s)	437, 509
HinfI	GANTC	1 cut(s)	89
HphI	GGTGA	1 cut(s)	383
Hpy188III	TCNNGA	3 cut(s)	10, 24, 305
HpyAV	CCTTC	3 cut(s)	365, 415, 454
HpyCH4III	ACNGT	4 cut(s)	108, 122, 211, 331
HpyCH4V	TGCA	1 cut(s)	404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
Hsp92II	CATG	2 cut(s)	82, 341
HspAI	GCGC	3 cut(s)	172, 193, 361
Kzo9I	GATC	2 cut(s)	226, 234
LpnPI	CCDG	5 cut(s)	37, 189, 198, 235, 306
LweI	GCATC	1 cut(s)	391
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	2 cut(s)	228, 236
MboI	GATC	2 cut(s)	226, 234
MluCI	AATT	2 cut(s)	300, 425
MnlI	CCTC	6 cut(s)	55, 76, 345, 450, 469, 490
MseI	TTAA	2 cut(s)	165, 428
MvnI	CGCG	1 cut(s)	361
MwoI	GCNNNNNNNGC	1 cut(s)	491
NdeII	GATC	2 cut(s)	226, 234
NlaIII	CATG	2 cut(s)	82, 341
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	371
PceI	AGGCCT	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	2 cut(s)	104, 311
PsrI	GAACNNNNNNTAC	2 cut(s)	324, 356
RsaI	GTAC	2 cut(s)	110, 333
RsaNI	GTAC	2 cut(s)	109, 332
SaqAI	TTAA	2 cut(s)	165, 428
Sau3AI	GATC	2 cut(s)	226, 234
Sau96I	GGNCC	2 cut(s)	104, 311
SetI	ASST	6 cut(s)	252, 272, 337, 370, 441, 513
SfaNI	GCATC	1 cut(s)	391
SinI	GGWCC	2 cut(s)	104, 311
SmlI	CTYRAG	2 cut(s)	263, 473
SmoI	CTYRAG	2 cut(s)	263, 473
Sse9I	AATT	2 cut(s)	300, 425
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	1 cut(s)	359
StuI	AGGCCT	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	4 cut(s)	108, 122, 211, 331
TaqI	TCGA	3 cut(s)	11, 117, 408
TasI	AATT	2 cut(s)	300, 425
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	2 cut(s)	165, 428
Tru9I	TTAA	2 cut(s)	165, 428
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	371
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	3 cut(s)	39, 332, 426
TspRI	CASTG	1 cut(s)	229
VpaK11BI	GGWCC	2 cut(s)	104, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.