Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003566

Physical Location & Seq

Genomic Coordinates Reverse (-)

4228248 .. 4230367

Gene Structure 2120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1049100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCCGTTGTCGACGGTGGCTTCCACTGTTAGATCTTTCATTACACGATCGTCCTTCGTCGCCAGAGCCGCCTTCCTTCCTCCTTCCTCCTTCTCCACCTCCGCCAAGAAACCACCAATTCCGACCCTTTCTTCTTCCTTTACCTCCGTCTCCGGCTCCTTTCATTATACTTTGTTTATAAAACCCAAACAGATGGCTTCGCAGATGTCTTCGGAGAGCTTCAAGTTCGGGCCGTACAAGATCGACGGGAGGGGAGTGTTCTACTCCACCAATCTATCCTTCGCCATGGTTAACCTGCGCCCTCTTGTTCCTGTGAGTACGGATGTCAAAGGAAAGGGTGCTGGTTTTTCGTTCTGGATCCGAAAAGGAAGACGCTTTGGTGATCTCACTGCTGATGAGACCAGTGACCTTTGGATCACAGCGCAAAAGGTTGGTAGTCGGCTGGAGAGTTACCACAAAGCATCATCTCTCACACTTGCTATTCAAGATGGACCCCAAGCCGGACAGAGCGTACCCCATGTTCATATCCATATCCTCCCACGGAAAGTTGGTGACTTTGAGAAGAACGATGAGATTTATGATGCAGTAAGATTGGAACGTCTATTTCAGAAGAAAAGGAGAAGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016819 GO:0043530 GO:0044424 GO:0044444 GO:0044464 GO:0047627

KEGG Pathways

Metabolic & Signaling

ko00230 ko05222 ko05223 map00230 map05222 map05223

Pfam Domains

Protein Families

HIT

Protein Analysis

210

Amino Acids

23.26

Weight (kDa)

10.34

Isoelectric Point (pI)

59.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIT	PF01230	86 - 182	4e-15	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58240 AT5G58240 AT5G58240
fragaria_vesca	FvH4_3g41190 FvH4_3g41190 FvH4_3g41190 FvH4_3g41230 FvH4_4g07220
malus_domestica	MD03G1046300.v1.1 MD03G1046400.v1.1 MD11G1049100.v1.1
prunus_persica	Prupe.6G037600_v2.0.a1
pyrus_communis	pycom11g03950
rosa_chinensis	RchiOBHm_Chr1g0353171 RchiOBHm_Chr2g0136141 RchiOBHm_Chr4g0393461 RchiOBHm_Chr5g0074021 RchiOBHm_Chr5g0074031 RchiOBHm_Chr5g0074041
rosa_laevigata	RLG00000036440 RLG00000036441
rosa_multiflora	Rmu_sc0004053.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007360
rosa_rugosa	Rorug05G0428400 Rorug05G0428500
rosa_samantha	Rh5AG485700 Rh5AG485800 Rh5BG505900 Rh5BG506000 Rh5CG529600 Rh5CG529700 Rh5DG518600 Rh5DG518700
rosa_wichuraiana	Rw5G045080 Rw5G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
Acc36I	ACCTGC	1 cut(s)	303
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	2 cut(s)	69, 102
AclWI	GGATC	3 cut(s)	352, 365, 422
AfaI	GTAC	3 cut(s)	236, 319, 513
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	2 cut(s)	223, 485
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	1 cut(s)	219
AluI	AGCT	1 cut(s)	219
Alw26I	GTCTC	2 cut(s)	154, 392
AlwI	GGATC	3 cut(s)	352, 365, 422
AoxI	GGCC	1 cut(s)	230
AspLEI	GCGC	2 cut(s)	300, 424
AspS9I	GGNCC	2 cut(s)	230, 491
AsuHPI	GGTGA	2 cut(s)	392, 563
AvaII	GGWCC	1 cut(s)	491
BamHI	GGATCC	1 cut(s)	357
BbsI	GAAGAC	2 cut(s)	201, 376
BccI	CCATC	2 cut(s)	187, 482
BceAI	ACGGC	1 cut(s)	217
BcoDI	GTCTC	2 cut(s)	154, 392
BfuAI	ACCTGC	1 cut(s)	303
BglII	AGATCT	1 cut(s)	32
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	2 cut(s)	230, 491
BmiI	GGNNCC	3 cut(s)	157, 359, 493
BmsI	GCATC	2 cut(s)	470, 571
BpiI	GAAGAC	2 cut(s)	201, 376
BpmI	CTGGAG	1 cut(s)	464
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	2 cut(s)	285, 539
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	402
BseDI	CCNNGG	2 cut(s)	285, 539
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseNI	ACTGG	1 cut(s)	402
Bsh1285I	CGRYCG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	232
BsiEI	CGRYCG	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	153, 501
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	2 cut(s)	154, 392
BsmBI	CGTCTC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	232
Bso31I	GGTCTC	1 cut(s)	392
Bsp143I	GATC	6 cut(s)	32, 47, 240, 357, 382, 414
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	2 cut(s)	69, 102
BspANI	GGCC	1 cut(s)	232
BspLI	GGNNCC	3 cut(s)	157, 359, 493
BspMI	ACCTGC	1 cut(s)	303
BspPI	GGATC	3 cut(s)	352, 365, 422
BspTNI	GGTCTC	1 cut(s)	392
BsrI	ACTGG	1 cut(s)	402
BssECI	CCNNGG	2 cut(s)	285, 539
BssMI	GATC	6 cut(s)	32, 47, 240, 357, 382, 414
BssT1I	CCWWGG	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	16, 28
BstDSI	CCRYGG	2 cut(s)	285, 539
BstF5I	GGATG	1 cut(s)	328
BstHHI	GCGC	2 cut(s)	300, 424
BstKTI	GATC	6 cut(s)	35, 50, 243, 360, 385, 417
BstMAI	GTCTC	2 cut(s)	154, 392
BstMBI	GATC	6 cut(s)	32, 47, 240, 357, 382, 414
BstMCI	CGRYCG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstV2I	GAAGAC	2 cut(s)	201, 376
BstX2I	RGATCY	2 cut(s)	32, 357
BstXI	CCANNNNNNTGG	1 cut(s)	193
BstYI	RGATCY	2 cut(s)	32, 357
BsuRI	GGCC	1 cut(s)	232
BtgI	CCRYGG	2 cut(s)	285, 539
BtsCI	GGATG	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	3 cut(s)	24, 387, 409
BveI	ACCTGC	1 cut(s)	303
CfoI	GCGC	2 cut(s)	300, 424
Cfr13I	GGNCC	2 cut(s)	230, 491
CseI	GACGC	1 cut(s)	381
Csp6I	GTAC	3 cut(s)	235, 318, 512
CviAII	CATG	2 cut(s)	286, 518
CviJI	RGCY	8 cut(s)	20, 68, 156, 197, 219, 232, 442, 500
CviKI_1	RGCY	8 cut(s)	20, 68, 156, 197, 219, 232, 442, 500
CviQI	GTAC	3 cut(s)	235, 318, 512
DpnI	GATC	6 cut(s)	34, 49, 242, 359, 384, 416
DpnII	GATC	6 cut(s)	32, 47, 240, 357, 382, 414
EciI	GGCGGA	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	491
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	2 cut(s)	289, 521
FaiI	YATR	7 cut(s)	168, 179, 287, 519, 525, 531, 579
FatI	CATG	2 cut(s)	285, 517
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	1 cut(s)	69
GlaI	GCGC	2 cut(s)	299, 423
GluI	GCNGC	1 cut(s)	69
GsuI	CTGGAG	1 cut(s)	464
HaeIII	GGCC	1 cut(s)	232
HapII	CCGG	2 cut(s)	153, 501
HgaI	GACGC	1 cut(s)	381
HhaI	GCGC	2 cut(s)	300, 424
Hin1II	CATG	2 cut(s)	289, 521
Hin6I	GCGC	2 cut(s)	298, 422
HinP1I	GCGC	2 cut(s)	298, 422
HincII	GTYRAC	2 cut(s)	12, 292
HindII	GTYRAC	2 cut(s)	12, 292
HpaI	GTTAAC	1 cut(s)	292
HpaII	CCGG	2 cut(s)	153, 501
HphI	GGTGA	2 cut(s)	392, 563
Hpy166II	GTNNAC	2 cut(s)	12, 292
Hpy188I	TCNGA	4 cut(s)	123, 214, 362, 609
Hpy188III	TCNNGA	2 cut(s)	355, 485
Hpy8I	GTNNAC	2 cut(s)	12, 292
Hpy99I	CGWCG	3 cut(s)	16, 62, 248
HpyAV	CCTTC	7 cut(s)	64, 82, 86, 93, 100, 289, 615
HpyCH4III	ACNGT	2 cut(s)	16, 28
HpyCH4IV	ACGT	1 cut(s)	598
HpyCH4V	TGCA	1 cut(s)	584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	598
Hsp92II	CATG	2 cut(s)	289, 521
HspAI	GCGC	2 cut(s)	298, 422
KspAI	GTTAAC	1 cut(s)	292
Kzo9I	GATC	6 cut(s)	32, 47, 240, 357, 382, 414
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	9 cut(s)	76, 166, 308, 324, 327, 340, 415, 428, 514
LweI	GCATC	2 cut(s)	470, 571
MaeII	ACGT	1 cut(s)	598
MaeIII	GTNAC	3 cut(s)	404, 449, 551
MalI	GATC	6 cut(s)	34, 49, 242, 359, 384, 416
MboI	GATC	6 cut(s)	32, 47, 240, 357, 382, 414
MboII	GAAGA	6 cut(s)	123, 126, 201, 381, 574, 622
MflI	RGATCY	2 cut(s)	32, 357
MluCI	AATT	2 cut(s)	117, 625
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	7 cut(s)	90, 97, 109, 154, 243, 312, 545
MseI	TTAA	2 cut(s)	291, 628
MspI	CCGG	2 cut(s)	153, 501
MwoI	GCNNNNNNNGC	1 cut(s)	68
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	6 cut(s)	32, 47, 240, 357, 382, 414
NlaIII	CATG	2 cut(s)	289, 521
NlaIV	GGNNCC	3 cut(s)	157, 359, 493
NmuCI	GTSAC	2 cut(s)	404, 551
PkrI	GCNGC	1 cut(s)	70
Ple19I	CGATCG	1 cut(s)	50
PsiI	TTATAA	1 cut(s)	179
PspN4I	GGNNCC	3 cut(s)	157, 359, 493
PspPI	GGNCC	2 cut(s)	230, 491
PsrI	GAACNNNNNNTAC	2 cut(s)	504, 536
PsuI	RGATCY	2 cut(s)	32, 357
PvuI	CGATCG	1 cut(s)	50
RsaI	GTAC	3 cut(s)	236, 319, 513
RsaNI	GTAC	3 cut(s)	235, 318, 512
SalI	GTCGAC	1 cut(s)	10
SaqAI	TTAA	2 cut(s)	291, 628
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	6 cut(s)	32, 47, 240, 357, 382, 414
Sau96I	GGNCC	2 cut(s)	230, 491
SetI	ASST	7 cut(s)	101, 146, 221, 297, 411, 432, 601
SfaNI	GCATC	2 cut(s)	470, 571
SinI	GGWCC	1 cut(s)	491
Sse9I	AATT	2 cut(s)	117, 625
SsiI	CCGC	2 cut(s)	69, 102
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	16, 28
TaiI	ACGT	1 cut(s)	601
TaqI	TCGA	2 cut(s)	11, 243
TasI	AATT	2 cut(s)	117, 625
TauI	GCSGC	1 cut(s)	71
Tru1I	TTAA	2 cut(s)	291, 628
Tru9I	TTAA	2 cut(s)	291, 628
TscAI	CASTG	3 cut(s)	31, 394, 409
TseFI	GTSAC	2 cut(s)	404, 551
Tsp45I	GTSAC	2 cut(s)	404, 551
TspDTI	ATGAA	3 cut(s)	28, 152, 512
TspGWI	ACGGA	3 cut(s)	136, 335, 556
TspRI	CASTG	3 cut(s)	31, 394, 409
VpaK11BI	GGWCC	1 cut(s)	491
XmiI	GTMKAC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.