Rw5G045090

Bis(5'-adenosyl)-triphosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003566
Physical Location & Seq
Forward (+)
78950840 .. 78952983
2144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G045090.1

Sequence Viewer

Length: 408 bp
ATGGCTTTGGAGTCCTATACATTTGGGCCGTACAAAAAGGACAGCAGGGAAGTGTTTTACAGCACTAGTCTGTCCTATGCCTTGGTTAATCTGCGCCCTGTTGTTCCTGTGAAGCGCTTTGCTGATCTCACTGTTGATGAGACCAGTGATCTTTGGATCACAGCACAAAAGGTTGGCAGTCGGCTTGAGAGCTACCACAAAGCAACATCTCTAACATTTGGGATTCAAGATGGTCCCCAAGCAGGGCAGACTGTACCCCATGTTCATATCCATATCCTTCCACGCAAAGATGATACACTTGATGAAAAGGAGAAGAAGAAGAAGCTTGACTTGGAAAAGGAGAGGAAGGACAGAAGCCTAGAGGAAATGACACAAGAAGCAGAGGAATACAGAAAGCTTTTCTTGTAG

Protein Analysis

135

Amino Acids

15.65

Weight (kDa)

6.43

Isoelectric Point (pI)

52.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIT PF01230 26 - 97 4.2e-15 HIT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 164
AfaI GTAC 2 cut(s) 32, 255
AfeI AGCGCT 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 242, 243
AgsI TTSAA 1 cut(s) 227
AhlI ACTAGT 1 cut(s) 65
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 3 cut(s) 192, 325, 397
AluI AGCT 3 cut(s) 192, 325, 397
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 1 cut(s) 164
Aor51HI AGCGCT 1 cut(s) 116
AoxI GGCC 1 cut(s) 26
AspLEI GCGC 2 cut(s) 96, 117
AspS9I GGNCC 2 cut(s) 26, 233
AvaII GGWCC 1 cut(s) 233
BccI CCATC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 134
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 2 cut(s) 66, 359
BfoI RGCGCY 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 2 cut(s) 26, 233
BmiI GGNNCC 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 243
Bse1I ACTGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 242, 243
BseNI ACTGG 1 cut(s) 144
BshFI GGCC 1 cut(s) 28
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 2 cut(s) 242, 243
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 1 cut(s) 28
Bso31I GGTCTC 1 cut(s) 134
Bsp143I GATC 3 cut(s) 124, 148, 156
BspANI GGCC 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 134
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 3 cut(s) 124, 148, 156
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 133, 253
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 2 cut(s) 96, 117
BstKTI GATC 3 cut(s) 127, 151, 159
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 3 cut(s) 124, 148, 156
BsuRI GGCC 1 cut(s) 28
BtsIMutI CAGTG 2 cut(s) 129, 151
CfoI GCGC 2 cut(s) 96, 117
Cfr13I GGNCC 2 cut(s) 26, 233
Csp6I GTAC 2 cut(s) 31, 254
CviAII CATG 1 cut(s) 260
CviJI RGCY 7 cut(s) 5, 28, 184, 192, 325, 357, 397
CviKI_1 RGCY 7 cut(s) 5, 28, 184, 192, 325, 357, 397
CviQI GTAC 2 cut(s) 31, 254
DpnI GATC 3 cut(s) 126, 150, 158
DpnII GATC 3 cut(s) 124, 148, 156
Eco130I CCWWGG 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 233
Eco47III AGCGCT 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 263
FaiI YATR 5 cut(s) 18, 78, 261, 267, 273
FalI AAGNNNNNCTT 3 cut(s) 314, 346, 386
FaqI GGGAC 1 cut(s) 219
FatI CATG 1 cut(s) 259
FspBI CTAG 2 cut(s) 66, 359
GlaI GCGC 2 cut(s) 95, 116
HaeII RGCGCY 1 cut(s) 118
HaeIII GGCC 1 cut(s) 28
HhaI GCGC 2 cut(s) 96, 117
Hin1II CATG 1 cut(s) 263
Hin6I GCGC 2 cut(s) 94, 115
HinP1I GCGC 2 cut(s) 94, 115
HindIII AAGCTT 2 cut(s) 323, 395
HinfI GANTC 2 cut(s) 11, 223
Hpy188III TCNNGA 1 cut(s) 227
HpyAV CCTTC 2 cut(s) 287, 340
HpyCH4III ACNGT 2 cut(s) 133, 253
Hsp92II CATG 1 cut(s) 263
HspAI GCGC 2 cut(s) 94, 115
Kzo9I GATC 3 cut(s) 124, 148, 156
LpnPI CCDG 5 cut(s) 31, 111, 120, 157, 228
MaeI CTAG 2 cut(s) 66, 359
MalI GATC 3 cut(s) 126, 150, 158
MboI GATC 3 cut(s) 124, 148, 156
MboII GAAGA 3 cut(s) 325, 328, 331
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 3 cut(s) 336, 355, 376
MseI TTAA 1 cut(s) 87
NdeII GATC 3 cut(s) 124, 148, 156
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 1 cut(s) 235
PfeI GAWTC 1 cut(s) 223
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 2 cut(s) 26, 233
PsrI GAACNNNNNNTAC 2 cut(s) 246, 278
RsaI GTAC 2 cut(s) 32, 255
RsaNI GTAC 2 cut(s) 31, 254
SaqAI TTAA 1 cut(s) 87
Sau3AI GATC 3 cut(s) 124, 148, 156
Sau96I GGNCC 2 cut(s) 26, 233
SchI GAGTC 1 cut(s) 20
SetI ASST 4 cut(s) 174, 194, 327, 399
SinI GGWCC 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 65
SspMI CTAG 2 cut(s) 66, 359
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 133, 253
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 2 cut(s) 136, 151
TspDTI ATGAA 2 cut(s) 254, 318
TspRI CASTG 2 cut(s) 136, 151
VpaK11BI GGWCC 1 cut(s) 233
XspI CTAG 2 cut(s) 66, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.