Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003566

Physical Location & Seq

Genomic Coordinates Forward (+)

74076424 .. 74077589

Gene Structure 1166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG529600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGATCGTGCATATAGATGGTCCCCAAGCAGGGCAGACTGTACCTCATGTTCATATCCATATCCTTCCGCGCAAAGGTGGTGACTTTGAGAACAATGATGAGATTTATGATGCACTCGATGAAAAGGAGAAGGAATTAAAGCAGAAGCTTGACTTGGATAAGGAGAGGAAGGACAGAAGCCTTGAGGAAATGGCAAAAGAAGCAGAGGAATACAGAAAGCTTTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016819 GO:0043530 GO:0044424 GO:0044444 GO:0044464 GO:0047627

KEGG Pathways

Metabolic & Signaling

ko00230 ko05222 ko05223 map00230 map05222 map05223

Pfam Domains

Protein Families

HIT

Protein Analysis

76

Amino Acids

8.94

Weight (kDa)

5.14

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIT	PF01230	2 - 25	3.2e-06	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58240 AT5G58240 AT5G58240
fragaria_vesca	FvH4_3g41190 FvH4_3g41190 FvH4_3g41190 FvH4_3g41230 FvH4_4g07220
malus_domestica	MD03G1046300.v1.1 MD03G1046400.v1.1 MD11G1049100.v1.1
prunus_persica	Prupe.6G037600_v2.0.a1
pyrus_communis	pycom11g03950
rosa_chinensis	RchiOBHm_Chr1g0353171 RchiOBHm_Chr2g0136141 RchiOBHm_Chr4g0393461 RchiOBHm_Chr5g0074021 RchiOBHm_Chr5g0074031 RchiOBHm_Chr5g0074041
rosa_laevigata	RLG00000036440 RLG00000036441
rosa_multiflora	Rmu_sc0004053.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007360
rosa_rugosa	Rorug05G0428400 Rorug05G0428500
rosa_samantha	Rh5AG485700 Rh5AG485800 Rh5BG505900 Rh5BG506000 Rh5CG529600 Rh5CG529700 Rh5DG518600 Rh5DG518700
rosa_wichuraiana	Rw5G045080 Rw5G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	70
AciI	CCGC	1 cut(s)	68
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	3 cut(s)	29, 30, 74
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	2 cut(s)	148, 220
AluI	AGCT	2 cut(s)	148, 220
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	20
BccI	CCATC	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	22
BmsI	GCATC	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 30, 74
BseLI	CCNNNNNNNGG	3 cut(s)	29, 30, 74
Bsh1236I	CGCG	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	6
BslI	CCNNNNNNNGG	3 cut(s)	29, 30, 74
BsmFI	GGGAC	1 cut(s)	6
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	22
BssMI	GATC	1 cut(s)	3
Bst4CI	ACNGT	1 cut(s)	40
BstFNI	CGCG	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstUI	CGCG	1 cut(s)	70
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	3 cut(s)	148, 180, 220
CviKI_1	RGCY	3 cut(s)	148, 180, 220
CviQI	GTAC	1 cut(s)	41
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	20
FaeI	CATG	1 cut(s)	50
FaiI	YATR	6 cut(s)	12, 14, 48, 54, 60, 108
FalI	AAGNNNNNCTT	3 cut(s)	137, 169, 209
FaqI	GGGAC	1 cut(s)	6
FatI	CATG	1 cut(s)	46
GlaI	GCGC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	50
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HindIII	AAGCTT	2 cut(s)	146, 218
HphI	GGTGA	1 cut(s)	92
HpyAV	CCTTC	3 cut(s)	74, 124, 163
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	2 cut(s)	10, 113
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
Hsp92II	CATG	1 cut(s)	50
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	1 cut(s)	15
LweI	GCATC	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MluCI	AATT	1 cut(s)	134
MnlI	CCTC	4 cut(s)	54, 159, 178, 199
MseI	TTAA	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	50
NlaIV	GGNNCC	1 cut(s)	22
NmuCI	GTSAC	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	20
PsrI	GAACNNNNNNTAC	2 cut(s)	33, 65
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	137
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	20
SetI	ASST	4 cut(s)	46, 79, 150, 222
SfaNI	GCATC	1 cut(s)	100
SgeI	CNNG	9 cut(s)	19, 38, 42, 59, 81, 128, 161, 166, 194
SinI	GGWCC	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	117
TasI	AATT	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	41, 135
VpaK11BI	GGWCC	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.