Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003566

Physical Location & Seq

Genomic Coordinates Reverse (-)

2839460 .. 2841545

Gene Structure 2086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G037600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCTGCTCTCAACCGTGGCTTCCAGTGTTGTTGGGCGTTTCATTACACGTTCGTCAAGAGTCAGCGGCATCCCTGATCCTTCCTTCTTCACAACCTCCACCAAGATGGCTTTGGAGCAATTTACGTTCGGCCCTTACAAGATTGACAGCAGGGAAGTGTTTTACTCTACTCATCTATCCTATGCCCTGGTCAACTTGCGTCCTGTTGTTCCTGCGCAAAAGGTTGGTAGTCGGCTTGAGACCTACCACAAAGCATCGTCTCTCACACTTACAATTCAAGATGGACCCCAAGCTGGACAGACTGTGCCCCATGTTCATATCCATATCATCCCACGGAAAGGTGGTGACTTTAAGGAGAATGATGAGATTTACGATGCACTAGATGAAAAGGAGAAGGAATTAAAGCAAAAGCTTGATTTAGACAAGGACAGGAAGGACAGAAGCCTTGACGAAATGGCACAAGAAGCAGAAGAATACAGAAAGTTGTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016819 GO:0043530 GO:0044424 GO:0044444 GO:0044464 GO:0047627

KEGG Pathways

Metabolic & Signaling

ko00230 ko05222 ko05223 map00230 map05222 map05223

Pfam Domains

Protein Families

HIT

Protein Analysis

165

Amino Acids

18.63

Weight (kDa)

6.52

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58240 AT5G58240 AT5G58240
fragaria_vesca	FvH4_3g41190 FvH4_3g41190 FvH4_3g41190 FvH4_3g41230 FvH4_4g07220
malus_domestica	MD03G1046300.v1.1 MD03G1046400.v1.1 MD11G1049100.v1.1
prunus_persica	Prupe.6G037600_v2.0.a1
pyrus_communis	pycom11g03950
rosa_chinensis	RchiOBHm_Chr1g0353171 RchiOBHm_Chr2g0136141 RchiOBHm_Chr4g0393461 RchiOBHm_Chr5g0074021 RchiOBHm_Chr5g0074031 RchiOBHm_Chr5g0074041
rosa_laevigata	RLG00000036440 RLG00000036441
rosa_multiflora	Rmu_sc0004053.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007360
rosa_rugosa	Rorug05G0428400 Rorug05G0428500
rosa_samantha	Rh5AG485700 Rh5AG485800 Rh5BG505900 Rh5BG506000 Rh5CG529600 Rh5CG529700 Rh5DG518600 Rh5DG518700
rosa_wichuraiana	Rw5G045080 Rw5G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	216
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	1 cut(s)	71
AfiI	CCNNNNNNNGG	2 cut(s)	293, 338
AflIII	ACRYGT	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	2 cut(s)	293, 412
AluI	AGCT	2 cut(s)	293, 412
Alw26I	GTCTC	2 cut(s)	233, 264
AlwI	GGATC	1 cut(s)	71
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	2 cut(s)	131, 284
AsuHPI	GGTGA	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	309
BccI	CCATC	2 cut(s)	100, 275
BciT130I	CCWGG	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	233, 264
BfaI	CTAG	1 cut(s)	380
BisI	GCNGC	2 cut(s)	5, 67
BlsI	GCNGC	2 cut(s)	6, 68
Bme1390I	CCNGG	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	131, 284
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	3 cut(s)	78, 263, 364
BpuEI	CTTGAG	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	3 cut(s)	15, 186, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 338
Bse1I	ACTGG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	3 cut(s)	15, 186, 332
BseGI	GGATG	2 cut(s)	69, 327
BseLI	CCNNNNNNNGG	2 cut(s)	293, 338
BseNI	ACTGG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	309
BshFI	GGCC	1 cut(s)	132
BslI	CCNNNNNNNGG	2 cut(s)	293, 338
BsmAI	GTCTC	2 cut(s)	233, 264
BsmBI	CGTCTC	1 cut(s)	264
BsnI	GGCC	1 cut(s)	132
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	286
BspPI	GGATC	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	3 cut(s)	15, 186, 332
BssMI	GATC	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	2 cut(s)	16, 304
BstDSI	CCRYGG	2 cut(s)	15, 332
BstF5I	GGATG	2 cut(s)	69, 327
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	2 cut(s)	233, 264
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstSLI	GKGCMC	1 cut(s)	309
BstXI	CCANNNNNNTGG	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	2 cut(s)	15, 332
BtsCI	GGATG	2 cut(s)	69, 327
BtsIMutI	CAGTG	1 cut(s)	31
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	2 cut(s)	131, 284
CseI	GACGC	1 cut(s)	188
CviAII	CATG	1 cut(s)	311
CviJI	RGCY	7 cut(s)	20, 110, 132, 235, 293, 412, 444
CviKI_1	RGCY	7 cut(s)	20, 110, 132, 235, 293, 412, 444
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	264
FaeI	CATG	1 cut(s)	314
FaiI	YATR	4 cut(s)	183, 312, 318, 324
FalI	AAGNNNNNCTT	1 cut(s)	473
FatI	CATG	1 cut(s)	310
Fnu4HI	GCNGC	2 cut(s)	5, 67
FokI	GGATG	2 cut(s)	56, 314
Fsp4HI	GCNGC	2 cut(s)	5, 67
FspBI	CTAG	1 cut(s)	380
FspI	TGCGCA	1 cut(s)	216
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	2 cut(s)	5, 67
HaeIII	GGCC	1 cut(s)	132
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	1 cut(s)	314
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	1 cut(s)	60
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188III	TCNNGA	2 cut(s)	57, 278
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	4 cut(s)	90, 94, 388, 427
HpyCH4III	ACNGT	2 cut(s)	16, 304
HpyCH4IV	ACGT	2 cut(s)	49, 125
HpyCH4V	TGCA	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpySE526I	ACGT	2 cut(s)	49, 125
Hsp92II	CATG	1 cut(s)	314
HspAI	GCGC	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	9 cut(s)	37, 87, 136, 173, 200, 216, 225, 279, 415
LweI	GCATC	3 cut(s)	78, 263, 364
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	2 cut(s)	49, 125
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	2 cut(s)	79, 482
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	3 cut(s)	119, 273, 398
MlyI	GAGTC	1 cut(s)	69
MnlI	CCTC	1 cut(s)	106
MseI	TTAA	2 cut(s)	351, 401
MslI	CAYNNNNRTG	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	464
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	314
NlaIV	GGNNCC	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	344
NsbI	TGCGCA	1 cut(s)	216
PkrI	GCNGC	2 cut(s)	6, 68
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	2 cut(s)	131, 284
RseI	CAYNNNNRTG	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	351, 401
SatI	GCNGC	2 cut(s)	5, 67
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	2 cut(s)	131, 284
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	8 cut(s)	52, 98, 128, 225, 245, 295, 343, 414
SfaNI	GCATC	3 cut(s)	78, 263, 364
SinI	GGWCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	3 cut(s)	119, 273, 398
SsiI	CCGC	1 cut(s)	66
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	16, 304
TaiI	ACGT	2 cut(s)	52, 128
TasI	AATT	3 cut(s)	119, 273, 398
TauI	GCSGC	1 cut(s)	69
Tru1I	TTAA	2 cut(s)	351, 401
Tru9I	TTAA	2 cut(s)	351, 401
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	3 cut(s)	31, 305, 399
TspGWI	ACGGA	1 cut(s)	349
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.