Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003566

Physical Location & Seq

Genomic Coordinates Reverse (-)

6645108 .. 6647408

Gene Structure 2301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAGCATTATTATCTTGGATAATATTGAAAGGTTACTTGAGTATATTGCTTTTGGTCCAAGGTTTTCAAATTTGATATCTCAAACACTGATGCTCCTTCTCAAGCGCACTCCTCCAAAGGGGAAAAAGCTTCTGGTTTTTGAGGCTGCAAAGAAGGTGCTAGAACAGTTACATGTCTTTGCTGATAAAGACATAGATGCAGCTGCAGAGGCCCTGAATGATATTCCTATCAACAAGCTCTGTATGGTAATTGAGATGGCAGCCCAGGGTGAGCAAGGAGGGCATGAAGTGAAGCGCTTTGCTGATCTCACTGTTGATGAGACCAGTGATCTTTGGATCACAGCCCAAAAGATTGTCAGACGGCTTGAGAGCTACCACAAAGCAACATCTCTAACATTTGGGATTCAAATGGTCCTTAAGCAGGGCAGACTGTACCCCATGTTCATATCCATATCCTTCTGCGCAAAGATGATGCACCAAGTTGTGGAATTCTATTTAAGTTTTTATCAGCACCTCCATATCCCTATGCTTGATGAGAAAGAGAAGAAATTAAAGAAGAAGCTTGACTTGGAAAAGGAGAGGAAGGATAGAAGGCCAGAGGAAATGACACGAGAAGCAGAGGAATACAGAAAGCTTTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

215

Amino Acids

25.0

Weight (kDa)

8.71

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58240 AT5G58240 AT5G58240
fragaria_vesca	FvH4_3g41190 FvH4_3g41190 FvH4_3g41190 FvH4_3g41230 FvH4_4g07220
malus_domestica	MD03G1046300.v1.1 MD03G1046400.v1.1 MD11G1049100.v1.1
prunus_persica	Prupe.6G037600_v2.0.a1
pyrus_communis	pycom11g03950
rosa_chinensis	RchiOBHm_Chr1g0353171 RchiOBHm_Chr2g0136141 RchiOBHm_Chr4g0393461 RchiOBHm_Chr5g0074021 RchiOBHm_Chr5g0074031 RchiOBHm_Chr5g0074041
rosa_laevigata	RLG00000036440 RLG00000036441
rosa_multiflora	Rmu_sc0004053.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007360
rosa_rugosa	Rorug05G0428400 Rorug05G0428500
rosa_samantha	Rh5AG485700 Rh5AG485800 Rh5BG505900 Rh5BG506000 Rh5CG529600 Rh5CG529700 Rh5DG518600 Rh5DG518700
rosa_wichuraiana	Rw5G045080 Rw5G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	463
AccB7I	CCANNNNNTGG	1 cut(s)	484
AclWI	GGATC	1 cut(s)	344
AcsI	RAATTY	2 cut(s)	70, 488
AfaI	GTAC	1 cut(s)	434
AfeI	AGCGCT	1 cut(s)	296
AfiI	CCNNNNNNNGG	3 cut(s)	119, 421, 484
AflII	CTTAAG	1 cut(s)	416
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	3 cut(s)	29, 69, 407
AjnI	CCWGG	1 cut(s)	264
AjuI	GAANNNNNNNTTGG	2 cut(s)	551, 583
AluBI	AGCT	6 cut(s)	130, 203, 238, 372, 562, 634
AluI	AGCT	6 cut(s)	130, 203, 238, 372, 562, 634
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	344
Aor51HI	AGCGCT	1 cut(s)	296
AoxI	GGCC	2 cut(s)	210, 593
ApeKI	GCWGC	4 cut(s)	146, 200, 203, 260
ApoI	RAATTY	2 cut(s)	70, 488
AspLEI	GCGC	3 cut(s)	108, 297, 464
AspS9I	GGNCC	3 cut(s)	56, 211, 412
AsuHPI	GGTGA	1 cut(s)	281
AvaII	GGWCC	2 cut(s)	56, 412
BauI	CACGAG	1 cut(s)	609
BbvI	GCAGC	4 cut(s)	133, 190, 212, 272
BccI	CCATC	1 cut(s)	250
BceAI	ACGGC	1 cut(s)	377
BciT130I	CCWGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	204
BfoI	RGCGCY	1 cut(s)	298
BfrI	CTTAAG	1 cut(s)	416
BisI	GCNGC	4 cut(s)	147, 201, 204, 261
BlsI	GCNGC	4 cut(s)	148, 202, 205, 262
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	2 cut(s)	56, 412
BmgT120I	GGNCC	3 cut(s)	56, 211, 412
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	3 cut(s)	81, 187, 462
BpuEI	CTTGAG	3 cut(s)	59, 86, 386
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	3 cut(s)	59, 264, 265
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 421, 484
Bse1I	ACTGG	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	3 cut(s)	59, 264, 265
BseLI	CCNNNNNNNGG	3 cut(s)	119, 421, 484
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	4 cut(s)	133, 190, 212, 272
BshFI	GGCC	2 cut(s)	212, 595
BslI	CCNNNNNNNGG	3 cut(s)	119, 421, 484
BsmAI	GTCTC	1 cut(s)	314
BsnI	GGCC	2 cut(s)	212, 595
Bso31I	GGTCTC	1 cut(s)	314
Bsp143I	GATC	3 cut(s)	304, 328, 336
BspANI	GGCC	2 cut(s)	212, 595
BspMAI	CTGCAG	1 cut(s)	208
BspPI	GGATC	1 cut(s)	344
BspTI	CTTAAG	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	3 cut(s)	59, 264, 265
BssMI	GATC	3 cut(s)	304, 328, 336
BssSI	CACGAG	1 cut(s)	609
BssT1I	CCWWGG	1 cut(s)	59
Bst2BI	CACGAG	1 cut(s)	609
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	3 cut(s)	168, 313, 432
BstAFI	CTTAAG	1 cut(s)	416
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	3 cut(s)	108, 297, 464
BstKTI	GATC	3 cut(s)	307, 331, 339
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	3 cut(s)	304, 328, 336
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 280
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	4 cut(s)	133, 190, 212, 272
BsuRI	GGCC	2 cut(s)	212, 595
BtsIMutI	CAGTG	3 cut(s)	86, 309, 331
CfoI	GCGC	3 cut(s)	108, 297, 464
Cfr13I	GGNCC	3 cut(s)	56, 211, 412
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	3 cut(s)	173, 284, 439
CviQI	GTAC	1 cut(s)	433
DpnI	GATC	3 cut(s)	306, 330, 338
DpnII	GATC	3 cut(s)	304, 328, 336
Eco130I	CCWWGG	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	314
Eco32I	GATATC	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	56, 412
Eco47III	AGCGCT	1 cut(s)	296
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRI	GAATTC	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	264
EcoRV	GATATC	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	3 cut(s)	176, 287, 442
FalI	AAGNNNNNCTT	3 cut(s)	551, 583, 623
FatI	CATG	3 cut(s)	172, 283, 438
Fnu4HI	GCNGC	4 cut(s)	147, 201, 204, 261
Fsp4HI	GCNGC	4 cut(s)	147, 201, 204, 261
FspBI	CTAG	1 cut(s)	161
FspI	TGCGCA	1 cut(s)	463
GlaI	GCGC	3 cut(s)	107, 296, 463
GluI	GCNGC	4 cut(s)	147, 201, 204, 261
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	2 cut(s)	212, 595
HhaI	GCGC	3 cut(s)	108, 297, 464
Hin1II	CATG	3 cut(s)	176, 287, 442
Hin6I	GCGC	3 cut(s)	106, 295, 462
HinP1I	GCGC	3 cut(s)	106, 295, 462
HindIII	AAGCTT	3 cut(s)	128, 560, 632
HinfI	GANTC	1 cut(s)	403
HphI	GGTGA	1 cut(s)	281
Hpy188I	TCNGA	1 cut(s)	359
HpyAV	CCTTC	5 cut(s)	107, 148, 466, 577, 585
HpyCH4III	ACNGT	3 cut(s)	168, 313, 432
HpyCH4V	TGCA	4 cut(s)	149, 200, 206, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 280
Hsp92II	CATG	3 cut(s)	176, 287, 442
HspAI	GCGC	3 cut(s)	106, 295, 462
Kzo9I	GATC	3 cut(s)	304, 328, 336
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	7 cut(s)	119, 227, 251, 278, 337, 407, 609
Lsp1109I	GCAGC	4 cut(s)	133, 190, 212, 272
LweI	GCATC	3 cut(s)	81, 187, 462
MaeI	CTAG	1 cut(s)	161
MaeIII	GTNAC	2 cut(s)	33, 168
MalI	GATC	3 cut(s)	306, 330, 338
MboI	GATC	3 cut(s)	304, 328, 336
MboII	GAAGA	2 cut(s)	556, 568
MluCI	AATT	4 cut(s)	70, 249, 488, 548
MnlI	CCTC	8 cut(s)	123, 136, 202, 272, 524, 573, 592, 613
MseI	TTAA	3 cut(s)	417, 497, 551
MspA1I	CMGCKG	1 cut(s)	203
MspCI	CTTAAG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	209, 280
NdeII	GATC	3 cut(s)	304, 328, 336
NlaIII	CATG	3 cut(s)	176, 287, 442
NsbI	TGCGCA	1 cut(s)	463
NspI	RCATGY	1 cut(s)	176
PasI	CCCWGGG	1 cut(s)	265
PciI	ACATGT	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	403
PflMI	CCANNNNNTGG	1 cut(s)	484
PkrI	GCNGC	4 cut(s)	148, 202, 205, 262
PscI	ACATGT	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspPI	GGNCC	3 cut(s)	56, 211, 412
PsrI	GAACNNNNNNTAC	2 cut(s)	425, 457
PstI	CTGCAG	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SaqAI	TTAA	3 cut(s)	417, 497, 551
SatI	GCNGC	4 cut(s)	147, 201, 204, 261
Sau3AI	GATC	3 cut(s)	304, 328, 336
Sau96I	GGNCC	3 cut(s)	56, 211, 412
ScrFI	CCNGG	1 cut(s)	266
SfaNI	GCATC	3 cut(s)	81, 187, 462
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	2 cut(s)	56, 412
SmlI	CTYRAG	4 cut(s)	38, 101, 365, 416
SmoI	CTYRAG	4 cut(s)	38, 101, 365, 416
Sse9I	AATT	4 cut(s)	70, 249, 488, 548
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	3 cut(s)	168, 313, 432
TasI	AATT	4 cut(s)	70, 249, 488, 548
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	3 cut(s)	417, 497, 551
Tru9I	TTAA	3 cut(s)	417, 497, 551
TscAI	CASTG	3 cut(s)	93, 316, 331
TseI	GCWGC	4 cut(s)	146, 200, 203, 260
TspDTI	ATGAA	2 cut(s)	300, 433
TspRI	CASTG	3 cut(s)	93, 316, 331
Van91I	CCANNNNNTGG	1 cut(s)	484
Vha464I	CTTAAG	1 cut(s)	416
VpaK11BI	GGWCC	2 cut(s)	56, 412
XagI	CCTNNNNNAGG	1 cut(s)	419
XapI	RAATTY	2 cut(s)	70, 488
XceI	RCATGY	1 cut(s)	176
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.