RchiOBHm_Chr5g0074031

Bis(5'-adenosyl)-triphosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003566
Physical Location & Seq
Forward (+)
80069953 .. 80071640
1688 bp
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UTR
Exon/CDS
Intron
PRQ34887

Sequence Viewer

Length: 468 bp
ATGTGTTTATATGCTTGCACAGCCTATCCATTCCGCGATGTTTGGATTAAGCCTCTTTTGAATGCCAACTATATATGTAGCGGTTTTATGTGGAACCATGTACTTAAATTGGTAAATCGTTCGGTGCGTGAAGTGAAGCGCTTTGTTGATCTGACTGTTGATGAGACCAGTGATCTTTGGATCACAGCACAAAAGGTTGGCAGTCGGCTTGAGAGCTACCACAAAGCAACATCTCTAACACTTACAATTCAAGATGGTCCCCAAGCAGGGCAGACTGTACCTCATGTTCATATCCATATCCTTCCGCGCAAAGGTGGTGACTTTGAGAACAATGATGAGATTTATGATGCACTCGATGAAAAGGAGAAGGAATTAAAGCAGAAGCTTGACTTGGATAAGGAGAGGAAGGACAGAAGCCTTGAGGAAATGGCACAAGAAGCAGAGGAATACAGAAAGCTTTTCTTGTAG

Protein Analysis

155

Amino Acids

18.1

Weight (kDa)

5.75

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIT PF01230 42 - 104 1e-14 HIT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 36, 307
AciI CCGC 3 cut(s) 34, 81, 305
AclWI GGATC 1 cut(s) 188
AfaI GTAC 2 cut(s) 102, 279
AfeI AGCGCT 1 cut(s) 140
AfiI CCNNNNNNNGG 3 cut(s) 266, 267, 311
AgsI TTSAA 2 cut(s) 61, 251
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AluBI AGCT 3 cut(s) 216, 385, 457
AluI AGCT 3 cut(s) 216, 385, 457
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 1 cut(s) 188
Aor51HI AGCGCT 1 cut(s) 140
AspLEI GCGC 2 cut(s) 141, 309
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 329
AvaII GGWCC 1 cut(s) 257
BccI CCATC 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 158
BfoI RGCGCY 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 2 cut(s) 95, 259
BmsI GCATC 1 cut(s) 337
BpuEI CTTGAG 2 cut(s) 230, 440
BsaI GGTCTC 1 cut(s) 158
Bsc4I CCNNNNNNNGG 3 cut(s) 266, 267, 311
Bse1I ACTGG 1 cut(s) 168
BseLI CCNNNNNNNGG 3 cut(s) 266, 267, 311
BseNI ACTGG 1 cut(s) 168
Bsh1236I CGCG 2 cut(s) 36, 307
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 3 cut(s) 266, 267, 311
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 243
BsmI GAATGC 1 cut(s) 67
Bso31I GGTCTC 1 cut(s) 158
Bsp143I GATC 3 cut(s) 148, 172, 180
BspACI CCGC 3 cut(s) 34, 81, 305
BspFNI CGCG 2 cut(s) 36, 307
BspLI GGNNCC 2 cut(s) 95, 259
BspPI GGATC 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 158
BsrI ACTGG 1 cut(s) 168
BssMI GATC 3 cut(s) 148, 172, 180
Bst4CI ACNGT 2 cut(s) 157, 277
BstC8I GCNNGC 1 cut(s) 16
BstFNI CGCG 2 cut(s) 36, 307
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 2 cut(s) 141, 309
BstKTI GATC 3 cut(s) 151, 175, 183
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 3 cut(s) 148, 172, 180
BstMWI GCNNNNNNNGC 2 cut(s) 20, 437
BstUI CGCG 2 cut(s) 36, 307
BtgZI GCGATG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 16
CfoI GCGC 2 cut(s) 141, 309
Cfr13I GGNCC 1 cut(s) 257
Csp6I GTAC 2 cut(s) 101, 278
CviAII CATG 2 cut(s) 98, 284
CviJI RGCY 7 cut(s) 23, 52, 208, 216, 385, 417, 457
CviKI_1 RGCY 7 cut(s) 23, 52, 208, 216, 385, 417, 457
CviQI GTAC 2 cut(s) 101, 278
DpnI GATC 3 cut(s) 150, 174, 182
DpnII GATC 3 cut(s) 148, 172, 180
Eco31I GGTCTC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 257
Eco47III AGCGCT 1 cut(s) 140
FaeI CATG 2 cut(s) 101, 287
FalI AAGNNNNNCTT 3 cut(s) 374, 406, 446
FaqI GGGAC 1 cut(s) 243
FatI CATG 2 cut(s) 97, 283
GlaI GCGC 2 cut(s) 140, 308
HaeII RGCGCY 1 cut(s) 142
HhaI GCGC 2 cut(s) 141, 309
Hin1II CATG 2 cut(s) 101, 287
Hin6I GCGC 2 cut(s) 139, 307
HinP1I GCGC 2 cut(s) 139, 307
HindIII AAGCTT 2 cut(s) 383, 455
HphI GGTGA 1 cut(s) 329
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 251
HpyAV CCTTC 3 cut(s) 311, 361, 400
HpyCH4III ACNGT 2 cut(s) 157, 277
HpyCH4V TGCA 2 cut(s) 18, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 437
Hsp92II CATG 2 cut(s) 101, 287
HspAI GCGC 2 cut(s) 139, 307
Kzo9I GATC 3 cut(s) 148, 172, 180
LpnPI CCDG 2 cut(s) 181, 252
LweI GCATC 1 cut(s) 337
MaeIII GTNAC 1 cut(s) 317
MalI GATC 3 cut(s) 150, 174, 182
MboI GATC 3 cut(s) 148, 172, 180
MluCI AATT 3 cut(s) 107, 246, 371
MnlI CCTC 5 cut(s) 63, 291, 396, 415, 436
MseI TTAA 3 cut(s) 48, 105, 374
Mva1269I GAATGC 1 cut(s) 67
MvnI CGCG 2 cut(s) 36, 307
MwoI GCNNNNNNNGC 2 cut(s) 20, 437
NdeII GATC 3 cut(s) 148, 172, 180
NlaIII CATG 2 cut(s) 101, 287
NlaIV GGNNCC 2 cut(s) 95, 259
NmuCI GTSAC 1 cut(s) 317
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PctI GAATGC 1 cut(s) 67
PspN4I GGNNCC 2 cut(s) 95, 259
PspPI GGNCC 1 cut(s) 257
PsrI GAACNNNNNNTAC 2 cut(s) 270, 302
RsaI GTAC 2 cut(s) 102, 279
RsaNI GTAC 2 cut(s) 101, 278
SaqAI TTAA 3 cut(s) 48, 105, 374
Sau3AI GATC 3 cut(s) 148, 172, 180
Sau96I GGNCC 1 cut(s) 257
SetI ASST 6 cut(s) 198, 218, 283, 316, 387, 459
SfaNI GCATC 1 cut(s) 337
SinI GGWCC 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 209, 419
SmoI CTYRAG 2 cut(s) 209, 419
Sse9I AATT 3 cut(s) 107, 246, 371
SsiI CCGC 3 cut(s) 34, 81, 305
TaaI ACNGT 2 cut(s) 157, 277
TaqI TCGA 1 cut(s) 354
TasI AATT 3 cut(s) 107, 246, 371
TatI WGTACW 1 cut(s) 100
Tru1I TTAA 3 cut(s) 48, 105, 374
Tru9I TTAA 3 cut(s) 48, 105, 374
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 278, 372
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.