Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003566

Physical Location & Seq

Genomic Coordinates Forward (+)

8983362 .. 8984040

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36605

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTTTCTCTTTGAATATGGTATGGGTTTTGTTCTTGATGGTGGTAGAGAGGTACTTCGATCACCCTTTACCCTTTATACAGAAGCCGCCATTGACATGCTTCCAAGCTTTGCGTCGAGGTCCAAACGACGTTATCGTCAAGCCAAGGAGGGATTCTCCAGGCCTTATCTTCTCCAGGCCTCCACCAAGATGGCTTTGGAATCCTATACATTTGGACCGTACAAAATCGGCAGCAGAGAAGTGTTTTACAACGCTAATCTATTGTATGCCTTGGTTAATCTGTGCCATGTTGCTCTTGGTACCGTTCTTACTCTCTTACAGTTATTAGAATGTAGAAATAAGTATAAAGTTGCAATCTTTTTTCTTTTTTTTTCTTTTGACCCATTTCCCTTTTTTCTGTGCACGTCATATCCTTTTGCATGGTGTTTCGAGTTGAGGCAAGGCATTGTTTTGCTTATGAAAGTTTGGCAATACGGAGCTCTATGGGAAGTAGAACATGTAGATTGCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016819 GO:0043530 GO:0044424 GO:0044444 GO:0044464 GO:0047627

KEGG Pathways

Metabolic & Signaling

ko00230 ko05222 ko05223 map00230 map05222 map05223

Pfam Domains

Protein Families

HIT

Protein Analysis

170

Amino Acids

19.87

Weight (kDa)

8.8

Isoelectric Point (pI)

56.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58240 AT5G58240 AT5G58240
fragaria_vesca	FvH4_3g41190 FvH4_3g41190 FvH4_3g41190 FvH4_3g41230 FvH4_4g07220
malus_domestica	MD03G1046300.v1.1 MD03G1046400.v1.1 MD11G1049100.v1.1
prunus_persica	Prupe.6G037600_v2.0.a1
pyrus_communis	pycom11g03950
rosa_chinensis	RchiOBHm_Chr1g0353171 RchiOBHm_Chr2g0136141 RchiOBHm_Chr4g0393461 RchiOBHm_Chr5g0074021 RchiOBHm_Chr5g0074031 RchiOBHm_Chr5g0074041
rosa_laevigata	RLG00000036440 RLG00000036441
rosa_multiflora	Rmu_sc0004053.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007360
rosa_rugosa	Rorug05G0428400 Rorug05G0428500
rosa_samantha	Rh5AG485700 Rh5AG485800 Rh5BG505900 Rh5BG506000 Rh5CG529600 Rh5CG529700 Rh5DG518600 Rh5DG518700
rosa_wichuraiana	Rw5G045080 Rw5G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	135
Acc36I	ACCTGC	1 cut(s)	498
Acc65I	GGTACC	1 cut(s)	299
AccB1I	GGYRCC	1 cut(s)	299
AciI	CCGC	1 cut(s)	87
AfaI	GTAC	3 cut(s)	54, 221, 301
AflIII	ACRYGT	1 cut(s)	496
AgsI	TTSAA	1 cut(s)	14
AjiI	CACGTC	1 cut(s)	405
AjnI	CCWGG	2 cut(s)	158, 174
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	2 cut(s)	108, 479
AluI	AGCT	2 cut(s)	108, 479
Alw21I	GWGCWC	2 cut(s)	404, 481
Alw44I	GTGCAC	1 cut(s)	400
AoxI	GGCC	2 cut(s)	161, 177
ApaLI	GTGCAC	1 cut(s)	400
ApeKI	GCWGC	1 cut(s)	231
Asp718I	GGTACC	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	120, 215
AsuHPI	GGTGA	1 cut(s)	54
AvaII	GGWCC	2 cut(s)	120, 215
BaeGI	GKGCMC	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	481
Bbv12I	GWGCWC	2 cut(s)	404, 481
BbvI	GCAGC	1 cut(s)	243
BccI	CCATC	2 cut(s)	32, 184
BciT130I	CCWGG	2 cut(s)	160, 176
BfuAI	ACCTGC	1 cut(s)	498
BisI	GCNGC	2 cut(s)	87, 232
BlsI	GCNGC	2 cut(s)	88, 233
Bme1390I	CCNGG	2 cut(s)	160, 176
Bme18I	GGWCC	2 cut(s)	120, 215
BmgBI	CACGTC	1 cut(s)	405
BmgT120I	GGNCC	2 cut(s)	120, 215
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	2 cut(s)	160, 176
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
BpmI	CTGGAG	2 cut(s)	142, 158
BsaJI	CCNNGG	2 cut(s)	144, 270
BseBI	CCWGG	2 cut(s)	160, 176
BseDI	CCNNGG	2 cut(s)	144, 270
BseSI	GKGCMC	1 cut(s)	404
BseXI	GCAGC	1 cut(s)	243
BshFI	GGCC	2 cut(s)	163, 179
BshNI	GGYRCC	1 cut(s)	299
BsiHKAI	GWGCWC	2 cut(s)	404, 481
BsnI	GGCC	2 cut(s)	163, 179
Bsp1286I	GDGCHC	2 cut(s)	404, 481
Bsp143I	GATC	1 cut(s)	59
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	2 cut(s)	163, 179
BspLI	GGNNCC	1 cut(s)	301
BspMI	ACCTGC	1 cut(s)	498
BspT107I	GGYRCC	1 cut(s)	299
BssECI	CCNNGG	2 cut(s)	144, 270
BssMI	GATC	1 cut(s)	59
BssT1I	CCWWGG	2 cut(s)	144, 270
Bst2UI	CCWGG	2 cut(s)	160, 176
Bst4CI	ACNGT	3 cut(s)	219, 304, 321
BstKTI	GATC	1 cut(s)	62
BstMBI	GATC	1 cut(s)	59
BstNI	CCWGG	2 cut(s)	160, 176
BstNSI	RCATGY	2 cut(s)	100, 500
BstSCI	CCNGG	2 cut(s)	158, 174
BstSLI	GKGCMC	1 cut(s)	404
BstV1I	GCAGC	1 cut(s)	243
BstXI	CCANNNNNNTGG	1 cut(s)	190
BsuRI	GGCC	2 cut(s)	163, 179
BtrI	CACGTC	1 cut(s)	405
BveI	ACCTGC	1 cut(s)	498
Cfr13I	GGNCC	2 cut(s)	120, 215
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	3 cut(s)	53, 220, 300
CviAII	CATG	4 cut(s)	97, 287, 420, 497
CviJI	RGCY	7 cut(s)	86, 108, 143, 163, 179, 194, 479
CviKI_1	RGCY	7 cut(s)	86, 108, 143, 163, 179, 194, 479
CviQI	GTAC	3 cut(s)	53, 220, 300
DpnI	GATC	1 cut(s)	61
DpnII	GATC	1 cut(s)	59
DrdI	GACNNNNNNGTC	1 cut(s)	135
DseDI	GACNNNNNNGTC	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	479
Eco130I	CCWWGG	2 cut(s)	144, 270
Eco147I	AGGCCT	2 cut(s)	163, 179
Eco24I	GRGCYC	1 cut(s)	481
Eco47I	GGWCC	2 cut(s)	120, 215
Eco53kI	GAGCTC	1 cut(s)	479
EcoICRI	GAGCTC	1 cut(s)	479
EcoRII	CCWGG	2 cut(s)	158, 174
EcoT14I	CCWWGG	2 cut(s)	144, 270
EcoT38I	GRGCYC	1 cut(s)	481
ErhI	CCWWGG	2 cut(s)	144, 270
FaeI	CATG	4 cut(s)	100, 290, 423, 500
FatI	CATG	4 cut(s)	96, 286, 419, 496
Fnu4HI	GCNGC	2 cut(s)	87, 232
FriOI	GRGCYC	1 cut(s)	481
Fsp4HI	GCNGC	2 cut(s)	87, 232
GluI	GCNGC	2 cut(s)	87, 232
GsuI	CTGGAG	2 cut(s)	142, 158
HaeIII	GGCC	2 cut(s)	163, 179
HgaI	GACGC	1 cut(s)	102
Hin1II	CATG	4 cut(s)	100, 290, 423, 500
HindIII	AAGCTT	1 cut(s)	106
HinfI	GANTC	2 cut(s)	153, 200
HphI	GGTGA	1 cut(s)	54
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	402
Hpy99I	CGWCG	2 cut(s)	118, 132
HpyCH4III	ACNGT	3 cut(s)	219, 304, 321
HpyCH4IV	ACGT	2 cut(s)	130, 404
HpyCH4V	TGCA	4 cut(s)	353, 402, 419, 507
HpySE526I	ACGT	2 cut(s)	130, 404
Hsp92II	CATG	4 cut(s)	100, 290, 423, 500
KpnI	GGTACC	1 cut(s)	303
Kzo9I	GATC	1 cut(s)	59
LmnI	GCTCC	1 cut(s)	476
LpnPI	CCDG	5 cut(s)	145, 161, 172, 188, 493
Lsp1109I	GCAGC	1 cut(s)	243
MaeII	ACGT	2 cut(s)	130, 404
MalI	GATC	1 cut(s)	61
MboI	GATC	1 cut(s)	59
MboII	GAAGA	1 cut(s)	161
MhlI	GDGCHC	2 cut(s)	404, 481
MnlI	CCTC	5 cut(s)	43, 111, 142, 190, 429
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	2 cut(s)	95, 188
MspR9I	CCNGG	2 cut(s)	160, 176
MvaI	CCWGG	2 cut(s)	160, 176
NdeII	GATC	1 cut(s)	59
NlaIII	CATG	4 cut(s)	100, 290, 423, 500
NlaIV	GGNNCC	1 cut(s)	301
NspI	RCATGY	2 cut(s)	100, 500
PceI	AGGCCT	2 cut(s)	163, 179
PciI	ACATGT	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	153, 200
PkrI	GCNGC	2 cut(s)	88, 233
PscI	ACATGT	1 cut(s)	496
Psp124BI	GAGCTC	1 cut(s)	481
Psp6I	CCWGG	2 cut(s)	158, 174
PspGI	CCWGG	2 cut(s)	158, 174
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	2 cut(s)	120, 215
RsaI	GTAC	3 cut(s)	54, 221, 301
RsaNI	GTAC	3 cut(s)	53, 220, 300
RseI	CAYNNNNRTG	2 cut(s)	95, 188
SacI	GAGCTC	1 cut(s)	481
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	2 cut(s)	87, 232
Sau3AI	GATC	1 cut(s)	59
Sau96I	GGNCC	2 cut(s)	120, 215
ScrFI	CCNGG	2 cut(s)	160, 176
SduI	GDGCHC	2 cut(s)	404, 481
SetI	ASST	7 cut(s)	54, 110, 122, 133, 407, 481, 512
SinI	GGWCC	2 cut(s)	120, 215
SmiMI	CAYNNNNRTG	2 cut(s)	95, 188
SseBI	AGGCCT	2 cut(s)	163, 179
SsiI	CCGC	1 cut(s)	87
SstI	GAGCTC	1 cut(s)	481
StuI	AGGCCT	2 cut(s)	163, 179
StyD4I	CCNGG	2 cut(s)	158, 174
StyI	CCWWGG	2 cut(s)	144, 270
TaaI	ACNGT	3 cut(s)	219, 304, 321
TaiI	ACGT	2 cut(s)	133, 407
TaqI	TCGA	3 cut(s)	58, 116, 429
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	2 cut(s)	153, 200
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TseI	GCWGC	1 cut(s)	231
TspDTI	ATGAA	1 cut(s)	473
TspGWI	ACGGA	1 cut(s)	489
VneI	GTGCAC	1 cut(s)	400
VpaK11BI	GGWCC	2 cut(s)	120, 215
XceI	RCATGY	2 cut(s)	100, 500
XcmI	CCANNNNNNNNNTGG	2 cut(s)	193, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.