MD03G1046300.v1.1

Bis(5'-adenosyl)-triphosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0003566
Physical Location & Seq
Reverse (-)
3726027 .. 3727834
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1046300.v1.1.491

Sequence Viewer

Length: 594 bp
ATGGGAAAGAGAATCAATGGGGATCGAACCAGCACCAGTTGCATAGGTATGATTGTTGTTCGCCGCTACGGTAAAGAGCTATCTGCGGGAAATTTCCTTGTTTTAGTGCCCTTTTTCTTGCTTGGAGAATTAAGGCATAATGAATATGGATGTCAAAGGAAAGGGGTGTCGGTTTTTCGTTCTGGACTCGAAAAGGAAGAGTCTTTTATCCAGCTTGATTTTGGGTCCGAAAGGATTTTCTGTGGCACCAAAATGCGAGAAGTGAAGCGCTTTGTTGATCTCACTGCTGATGAGACCAGTGATCTTTGGATCACAGCACAAAGGGTTGGTAGCCGGCTTGAGAGTTACCACAAAGCATCATCTCTCACACTTGCTATTCAAGATGGACCCGAAGCCGGACAGACTGTACCCCATGTTCATATTCATATCCTCCCACGGAAAGGTGGCGACTTTGAGAAGAATGATGAGATTTATGATGCGCTGGATGAAAAGGAGAAGGAATTAACGCAAAAGCTTGATTTAGACAAGGAAAGGAAGGACAGAAGCCTCGAGGAAATGGCACAAGATGCCGAAGAGTACAAAAAGTTGTTTTAG

Protein Analysis

198

Amino Acids

22.55

Weight (kDa)

5.82

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIT PF01230 86 - 147 1.1e-14 HIT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 548
AccB1I GGYRCC 1 cut(s) 245
AciI CCGC 2 cut(s) 64, 86
AclWI GGATC 2 cut(s) 30, 317
AcsI RAATTY 1 cut(s) 91
AfaI GTAC 2 cut(s) 408, 578
AfeI AGCGCT 1 cut(s) 269
AfiI CCNNNNNNNGG 2 cut(s) 395, 440
AgsI TTSAA 1 cut(s) 380
AluBI AGCT 3 cut(s) 79, 214, 514
AluI AGCT 3 cut(s) 79, 214, 514
Alw26I GTCTC 1 cut(s) 287
AlwI GGATC 2 cut(s) 30, 317
Ama87I CYCGRG 1 cut(s) 548
Aor51HI AGCGCT 1 cut(s) 269
ApoI RAATTY 1 cut(s) 91
AspLEI GCGC 2 cut(s) 270, 481
AspS9I GGNCC 2 cut(s) 225, 386
AvaI CYCGRG 1 cut(s) 548
AvaII GGWCC 2 cut(s) 225, 386
BaeGI GKGCMC 1 cut(s) 111
BanI GGYRCC 1 cut(s) 245
BccI CCATC 1 cut(s) 377
BcoDI GTCTC 1 cut(s) 287
BfoI RGCGCY 1 cut(s) 271
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
Bme18I GGWCC 2 cut(s) 225, 386
BmeT110I CYCGRG 1 cut(s) 548
BmgT120I GGNCC 2 cut(s) 225, 386
BmiI GGNNCC 3 cut(s) 226, 247, 388
BmsI GCATC 3 cut(s) 365, 466, 556
BpuEI CTTGAG 1 cut(s) 359
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 434
Bsc4I CCNNNNNNNGG 2 cut(s) 395, 440
Bse118I RCCGGY 1 cut(s) 333
Bse1I ACTGG 2 cut(s) 36, 297
BseDI CCNNGG 1 cut(s) 434
BseGI GGATG 2 cut(s) 155, 490
BseLI CCNNNNNNNGG 2 cut(s) 395, 440
BseNI ACTGG 2 cut(s) 36, 297
BseSI GKGCMC 1 cut(s) 111
BshNI GGYRCC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 548
BsiSI CCGG 2 cut(s) 334, 396
BslI CCNNNNNNNGG 2 cut(s) 395, 440
BsmAI GTCTC 1 cut(s) 287
Bso31I GGTCTC 1 cut(s) 287
BsoBI CYCGRG 1 cut(s) 548
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 4 cut(s) 22, 277, 301, 309
BspACI CCGC 2 cut(s) 64, 86
BspLI GGNNCC 3 cut(s) 226, 247, 388
BspPI GGATC 2 cut(s) 30, 317
BspT107I GGYRCC 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 287
BsrFI RCCGGY 1 cut(s) 333
BsrI ACTGG 2 cut(s) 36, 297
BssAI RCCGGY 1 cut(s) 333
BssECI CCNNGG 1 cut(s) 434
BssMI GATC 4 cut(s) 22, 277, 301, 309
Bst4CI ACNGT 2 cut(s) 71, 406
Bst6I CTCTTC 2 cut(s) 192, 567
BstAPI GCANNNNNTGC 2 cut(s) 39, 566
BstC8I GCNNGC 1 cut(s) 335
BstDSI CCRYGG 1 cut(s) 434
BstF5I GGATG 2 cut(s) 155, 490
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 2 cut(s) 270, 481
BstKTI GATC 4 cut(s) 25, 280, 304, 312
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 4 cut(s) 22, 277, 301, 309
BstMWI GCNNNNNNNGC 2 cut(s) 39, 566
BstSLI GKGCMC 1 cut(s) 111
BtgI CCRYGG 1 cut(s) 434
BtsCI GGATG 2 cut(s) 155, 490
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 2 cut(s) 282, 304
Cac8I GCNNGC 1 cut(s) 335
CfoI GCGC 2 cut(s) 270, 481
Cfr10I RCCGGY 1 cut(s) 333
Cfr13I GGNCC 2 cut(s) 225, 386
Csp6I GTAC 2 cut(s) 407, 577
CviAII CATG 1 cut(s) 413
CviJI RGCY 7 cut(s) 79, 214, 333, 337, 395, 514, 546
CviKI_1 RGCY 7 cut(s) 79, 214, 333, 337, 395, 514, 546
CviQI GTAC 2 cut(s) 407, 577
DpnI GATC 4 cut(s) 24, 279, 303, 311
DpnII GATC 4 cut(s) 22, 277, 301, 309
Eam1104I CTCTTC 2 cut(s) 192, 567
EarI CTCTTC 2 cut(s) 192, 567
Eco31I GGTCTC 1 cut(s) 287
Eco47I GGWCC 2 cut(s) 225, 386
Eco47III AGCGCT 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 548
FaeI CATG 1 cut(s) 416
FaiI YATR 8 cut(s) 44, 50, 138, 147, 414, 420, 426, 474
FatI CATG 1 cut(s) 412
FauI CCCGC 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 64
FokI GGATG 2 cut(s) 162, 497
Fsp4HI GCNGC 1 cut(s) 64
GlaI GCGC 2 cut(s) 269, 480
GluI GCNGC 1 cut(s) 64
HaeII RGCGCY 1 cut(s) 271
HapII CCGG 2 cut(s) 334, 396
HhaI GCGC 2 cut(s) 270, 481
Hin1II CATG 1 cut(s) 416
Hin6I GCGC 2 cut(s) 268, 479
HinP1I GCGC 2 cut(s) 268, 479
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 3 cut(s) 12, 186, 200
HpaII CCGG 2 cut(s) 334, 396
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 2 cut(s) 183, 380
HpyAV CCTTC 2 cut(s) 490, 529
HpyCH4III ACNGT 2 cut(s) 71, 406
HpyCH4V TGCA 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 566
Hsp92II CATG 1 cut(s) 416
HspAI GCGC 2 cut(s) 268, 479
KroI GCCGGC 1 cut(s) 333
KroNI GCCGGC 1 cut(s) 335
Kzo9I GATC 4 cut(s) 22, 277, 301, 309
LpnPI CCDG 8 cut(s) 43, 49, 168, 224, 310, 347, 409, 467
LweI GCATC 3 cut(s) 365, 466, 556
MaeIII GTNAC 1 cut(s) 344
MalI GATC 4 cut(s) 24, 279, 303, 311
MboI GATC 4 cut(s) 22, 277, 301, 309
MboII GAAGA 3 cut(s) 209, 469, 584
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 3 cut(s) 91, 128, 500
MlyI GAGTC 2 cut(s) 180, 209
MnlI CCTC 3 cut(s) 440, 544, 557
MroNI GCCGGC 1 cut(s) 333
MseI TTAA 2 cut(s) 131, 503
MslI CAYNNNNRTG 2 cut(s) 47, 251
MspI CCGG 2 cut(s) 334, 396
MwoI GCNNNNNNNGC 2 cut(s) 39, 566
NaeI GCCGGC 1 cut(s) 335
NdeII GATC 4 cut(s) 22, 277, 301, 309
NgoMIV GCCGGC 1 cut(s) 333
NlaIII CATG 1 cut(s) 416
NlaIV GGNNCC 3 cut(s) 226, 247, 388
PaeR7I CTCGAG 1 cut(s) 548
PdiI GCCGGC 1 cut(s) 335
PfeI GAWTC 1 cut(s) 12
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 2 cut(s) 180, 208
PpsI GAGTC 2 cut(s) 180, 208
PspN4I GGNNCC 3 cut(s) 226, 247, 388
PspPI GGNCC 2 cut(s) 225, 386
PspXI VCTCGAGB 1 cut(s) 548
PsrI GAACNNNNNNTAC 2 cut(s) 399, 431
RsaI GTAC 2 cut(s) 408, 578
RsaNI GTAC 2 cut(s) 407, 577
RseI CAYNNNNRTG 2 cut(s) 47, 251
SaqAI TTAA 2 cut(s) 131, 503
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 4 cut(s) 22, 277, 301, 309
Sau96I GGNCC 2 cut(s) 225, 386
SchI GAGTC 2 cut(s) 180, 209
SduI GDGCHC 1 cut(s) 111
SetI ASST 5 cut(s) 49, 81, 216, 445, 516
SfaNI GCATC 3 cut(s) 365, 466, 556
Sfr274I CTCGAG 1 cut(s) 548
SinI GGWCC 2 cut(s) 225, 386
SlaI CTCGAG 1 cut(s) 548
SmiMI CAYNNNNRTG 2 cut(s) 47, 251
SmlI CTYRAG 2 cut(s) 338, 548
SmoI CTYRAG 2 cut(s) 338, 548
Sse9I AATT 3 cut(s) 91, 128, 500
SsiI CCGC 2 cut(s) 64, 86
TaaI ACNGT 2 cut(s) 71, 406
TaqI TCGA 3 cut(s) 25, 189, 549
TasI AATT 3 cut(s) 91, 128, 500
TatI WGTACW 1 cut(s) 576
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 1 cut(s) 12
Tru1I TTAA 2 cut(s) 131, 503
Tru9I TTAA 2 cut(s) 131, 503
TscAI CASTG 2 cut(s) 289, 304
TspDTI ATGAA 4 cut(s) 156, 407, 413, 501
TspGWI ACGGA 1 cut(s) 451
TspRI CASTG 2 cut(s) 289, 304
VpaK11BI GGWCC 2 cut(s) 225, 386
XapI RAATTY 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.