Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002545

Physical Location & Seq

Genomic Coordinates Reverse (-)

1971150 .. 1972731

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g02130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGTGGCTTCCGTTCCCTCTCTTTGTCTTTGGTTTGGTTTTGTGATCGATTTCTATTTGTTAGGAGGATTATTATCAAGCTCGGAATCTGCTGATGATGACGGAACTTGCTTGGATCTATTGTCGACGTCCTCCTTCCTTCCTTCAGCCGCCGCTTCTCTTACCTCCGGTTCCCTCTCCCTCCTCACCGCCTCCCTCTTCTTCCTCCTTACCCCAGATCTGGTCTCACGACCACCCCATCCACTATCCCTTTTTGACGGCTCTCCCAATCAAAGGGAAATTGTTCTGTTACGTGAATATGCTGCAAAGAGTCCTTTTACAATCTCTAAGATAACCAAACATATTGAAGATATGTGTTACAAAGAGCTAGGAATTGAGCATGTCAAATTCATCAATATTGTTGCAGAGGCCTACAACAAGTTACTTTACCTCTATGGGGAAGTTATGGAAACCAAATCTGGAAGCTGGAGGAAGCCATTCTTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.87

Weight (kDa)

5.09

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02130 FvH4_4g19090 FvH4_4g19090 FvH4_4g19090 FvH4_4g19090
malus_domestica	MD02G1308900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316701 RchiOBHm_Chr1g0322201 RchiOBHm_Chr1g0331421
rosa_laevigata	RLG00000001007 RLG00000015282 RLG00000018939 RLG00000021189 RLG00000022243 RLG00000026167 RLG00000032388
rosa_multiflora	Rmu_sc0002667.1_g000001 Rmu_sc0005467.1_g000011 Rmu_sc0006942.1_g000001 Rmu_sc0007199.1_g000009 Rmu_sc0011314.1_g000010
rosa_roxburghii	Rroxscaffold_6G00406050 Rroxscaffold_7G00160900
rosa_samantha	Rh1AG023400 Rh1CG020200 Rh1CG022200 Rh1DG017900 Rh1DG020300 Rh1DG020900 Rh2AG275200 Rh2BG437500 Rh3DG271900 Rh4BG003200 Rh4BG137900 Rh4CG142900 Rh4DG257100 Rh5AG116000 Rh6CG275000 Rh7DG386000
rosa_wichuraiana	Rw1G001510 Rw1G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	131
AccI	GTMKAC	1 cut(s)	125
AciI	CCGC	3 cut(s)	150, 153, 189
AclWI	GGATC	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	386
AcuI	CTGAAG	1 cut(s)	129
AcyI	GRCGYC	1 cut(s)	128
AfiI	CCNNNNNNNGG	3 cut(s)	220, 273, 436
AgsI	TTSAA	1 cut(s)	347
AluBI	AGCT	3 cut(s)	81, 367, 465
AluI	AGCT	3 cut(s)	81, 367, 465
Alw26I	GTCTC	1 cut(s)	229
AlwI	GGATC	1 cut(s)	123
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	386
Asp700I	GAANNNNTTC	2 cut(s)	282, 476
AsuHPI	GGTGA	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	1 cut(s)	246
BceAI	ACGGC	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	368
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	3 cut(s)	150, 153, 303
BlsI	GCNGC	3 cut(s)	151, 154, 304
BmiI	GGNNCC	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	487
Bsa29I	ATCGAT	1 cut(s)	48
BsaAI	YACGTR	1 cut(s)	293
BsaBI	GATNNNNATC	1 cut(s)	73
BsaHI	GRCGYC	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	229
BsaWI	WCCGGW	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 273, 436
Bse8I	GATNNNNATC	1 cut(s)	73
BseCI	ATCGAT	1 cut(s)	48
BseGI	GGATG	1 cut(s)	238
BseJI	GATNNNNATC	1 cut(s)	73
BseLI	CCNNNNNNNGG	3 cut(s)	220, 273, 436
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	1 cut(s)	410
BshVI	ATCGAT	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	168
BslI	CCNNNNNNNGG	3 cut(s)	220, 273, 436
BsmAI	GTCTC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	410
Bso31I	GGTCTC	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	45, 115, 217
BspACI	CCGC	3 cut(s)	150, 153, 189
BspANI	GGCC	1 cut(s)	410
BspDI	ATCGAT	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	172
BspPI	GGATC	1 cut(s)	123
BspTNI	GGTCTC	1 cut(s)	229
BssMI	GATC	3 cut(s)	45, 115, 217
BssNI	GRCGYC	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	128
BstBAI	YACGTR	1 cut(s)	293
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	3 cut(s)	48, 118, 220
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	3 cut(s)	45, 115, 217
BstNSI	RCATGY	1 cut(s)	383
BstV1I	GCAGC	1 cut(s)	289
BstX2I	RGATCY	2 cut(s)	115, 217
BstYI	RGATCY	2 cut(s)	115, 217
Bsu15I	ATCGAT	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	410
BsuTUI	ATCGAT	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	238
ClaI	ATCGAT	1 cut(s)	48
CviAII	CATG	1 cut(s)	380
CviJI	RGCY	8 cut(s)	8, 81, 149, 261, 367, 410, 465, 475
CviKI_1	RGCY	8 cut(s)	8, 81, 149, 261, 367, 410, 465, 475
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	3 cut(s)	47, 117, 219
DpnII	GATC	3 cut(s)	45, 115, 217
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco147I	AGGCCT	1 cut(s)	410
Eco31I	GGTCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	129
FaeI	CATG	1 cut(s)	383
FaiI	YATR	6 cut(s)	300, 342, 353, 381, 435, 446
FalI	AAGNNNNNCTT	1 cut(s)	464
FatI	CATG	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	3 cut(s)	150, 153, 303
FokI	GGATG	1 cut(s)	225
Fsp4HI	GCNGC	3 cut(s)	150, 153, 303
FspBI	CTAG	1 cut(s)	368
GluI	GCNGC	3 cut(s)	150, 153, 303
GsuI	CTGGAG	1 cut(s)	487
HaeIII	GGCC	1 cut(s)	410
HapII	CCGG	1 cut(s)	168
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	1 cut(s)	383
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	2 cut(s)	86, 310
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	2 cut(s)	228, 459
Hpy8I	GTNNAC	1 cut(s)	126
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	3 cut(s)	145, 149, 153
HpyCH4IV	ACGT	2 cut(s)	128, 292
HpyCH4V	TGCA	2 cut(s)	305, 404
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	2 cut(s)	128, 292
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	1 cut(s)	383
Kzo9I	GATC	3 cut(s)	45, 115, 217
LpnPI	CCDG	5 cut(s)	181, 206, 228, 444, 451
Lsp1109I	GCAGC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	2 cut(s)	128, 292
MaeIII	GTNAC	3 cut(s)	288, 356, 420
MalI	GATC	3 cut(s)	47, 117, 219
MboI	GATC	3 cut(s)	45, 115, 217
MboII	GAAGA	4 cut(s)	190, 193, 359, 472
MflI	RGATCY	2 cut(s)	115, 217
MluCI	AATT	3 cut(s)	279, 372, 386
MlyI	GAGTC	1 cut(s)	319
MroXI	GAANNNNTTC	2 cut(s)	282, 476
MspI	CCGG	1 cut(s)	168
NdeII	GATC	3 cut(s)	45, 115, 217
NlaIII	CATG	1 cut(s)	383
NlaIV	GGNNCC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	383
PceI	AGGCCT	1 cut(s)	410
PdmI	GAANNNNTTC	2 cut(s)	282, 476
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	151, 154, 304
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
Ppu21I	YACGTR	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	172
PsuI	RGATCY	2 cut(s)	115, 217
SalI	GTCGAC	1 cut(s)	124
SatI	GCNGC	3 cut(s)	150, 153, 303
Sau3AI	GATC	3 cut(s)	45, 115, 217
SchI	GAGTC	1 cut(s)	319
SetI	ASST	7 cut(s)	83, 131, 167, 295, 369, 432, 467
Sse9I	AATT	3 cut(s)	279, 372, 386
SseBI	AGGCCT	1 cut(s)	410
SsiI	CCGC	3 cut(s)	150, 153, 189
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	1 cut(s)	368
StuI	AGGCCT	1 cut(s)	410
TaiI	ACGT	2 cut(s)	131, 295
TaqI	TCGA	2 cut(s)	48, 125
TasI	AATT	3 cut(s)	279, 372, 386
TauI	GCSGC	2 cut(s)	152, 155
TfiI	GAWTC	1 cut(s)	86
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	379
TspGWI	ACGGA	1 cut(s)	117
XapI	RAATTY	1 cut(s)	386
XceI	RCATGY	1 cut(s)	383
XmiI	GTMKAC	1 cut(s)	125
XmnI	GAANNNNTTC	2 cut(s)	282, 476
XspI	CTAG	1 cut(s)	368
ZraI	GACGTC	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.