Rmu_sc0011314.1_g000010

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011314.1
OG0002545
Physical Location & Seq
Forward (+)
32698 .. 34532
1835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011314.1_g000010.1.cds

Sequence Viewer

Length: 345 bp
atgtacacgaacggttccgtcgttgtggtgaggccaaggacgaggttggctgtgaaaaagctaaaggaggaggaggtgctgccggagccggagaaggagaaggaccgcgtgaatgtgatttcggagaaggaagactccgattcggaaggtgaaagggaggaagaagaagaagagaacaaagctacgatggctgacgatagtggtggcttgagtgctaacaaggttgctgggcaagaagaagagaacagtacgacgccgtttccagaaaaggtatccgaaaatttgcgcctttatttcaattgggtcgatgctggttctgatgaattgtgttccttatttgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04392 map04011 map04392
Pfam Domains
Protein Families
Pkinase

Protein Analysis

114

Amino Acids

12.84

Weight (kDa)

4.39

Isoelectric Point (pI)

59.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 108
AciI CCGC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 280
AcyI GRCGYC 1 cut(s) 254
AfaI GTAC 2 cut(s) 5, 250
AgsI TTSAA 1 cut(s) 298
AluBI AGCT 2 cut(s) 61, 182
AluI AGCT 2 cut(s) 61, 182
AoxI GGCC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 280
AspLEI GCGC 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 103
AsuHPI GGTGA 2 cut(s) 40, 161
AvaII GGWCC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 66
BccI CCATC 1 cut(s) 181
BceAI ACGGC 1 cut(s) 241
BciVI GTATCC 1 cut(s) 283
BfuI GTATCC 1 cut(s) 283
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 2 cut(s) 16, 87
BmsI GCATC 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 229
BsaHI GRCGYC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 35
BseRI GAGGAG 2 cut(s) 83, 86
BseXI GCAGC 1 cut(s) 66
BseYI CCCAGC 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 1 cut(s) 34
BsiSI CCGG 2 cut(s) 83, 89
BsnI GGCC 1 cut(s) 34
Bsp1407I TGTACA 1 cut(s) 3
BspACI CCGC 1 cut(s) 106
BspANI GGCC 1 cut(s) 34
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 16, 87
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 35
BssNI GRCGYC 1 cut(s) 254
BssT1I CCWWGG 1 cut(s) 35
Bst4CI ACNGT 2 cut(s) 14, 248
Bst6I CTCTTC 2 cut(s) 165, 234
BstACI GRCGYC 1 cut(s) 254
BstAUI TGTACA 1 cut(s) 3
BstFNI CGCG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 288
BstMWI GCNNNNNNNGC 2 cut(s) 85, 188
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 66
BstV2I GAAGAC 1 cut(s) 138
BsuI GTATCC 1 cut(s) 283
BsuRI GGCC 1 cut(s) 34
CfoI GCGC 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 103
CseI GACGC 1 cut(s) 262
Csp6I GTAC 2 cut(s) 4, 249
CviJI RGCY 7 cut(s) 34, 50, 61, 88, 182, 191, 207
CviKI_1 RGCY 7 cut(s) 34, 50, 61, 88, 182, 191, 207
CviQI GTAC 2 cut(s) 4, 249
Eam1104I CTCTTC 2 cut(s) 165, 234
EarI CTCTTC 2 cut(s) 165, 234
Eco130I CCWWGG 1 cut(s) 35
Eco47I GGWCC 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
Fnu4HI GCNGC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 80
GlaI GCGC 1 cut(s) 287
GluI GCNGC 1 cut(s) 80
GsaI CCCAGC 1 cut(s) 231
HaeIII GGCC 1 cut(s) 34
HapII CCGG 2 cut(s) 83, 89
HgaI GACGC 1 cut(s) 262
HhaI GCGC 1 cut(s) 288
Hin1I GRCGYC 1 cut(s) 254
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HinfI GANTC 2 cut(s) 134, 140
HpaII CCGG 2 cut(s) 83, 89
HphI GGTGA 2 cut(s) 40, 161
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 5 cut(s) 124, 139, 145, 277, 319
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 2 cut(s) 23, 256
HpyAV CCTTC 4 cut(s) 88, 94, 121, 140
HpyCH4III ACNGT 2 cut(s) 14, 248
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 188
Hsp92I GRCGYC 1 cut(s) 254
HspAI GCGC 1 cut(s) 286
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 5 cut(s) 96, 102, 213, 276, 297
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 1 cut(s) 298
MboII GAAGA 7 cut(s) 143, 173, 176, 179, 182, 248, 251
MfeI CAATTG 1 cut(s) 298
MluCI AATT 3 cut(s) 280, 298, 323
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 6 cut(s) 24, 36, 61, 64, 67, 151
MseI TTAA 1 cut(s) 343
MspI CCGG 2 cut(s) 83, 89
MunI CAATTG 1 cut(s) 298
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 85, 188
NlaIV GGNNCC 2 cut(s) 16, 87
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 81
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PspFI CCCAGC 1 cut(s) 227
PspN4I GGNNCC 2 cut(s) 16, 87
PspPI GGNCC 1 cut(s) 103
RsaI GTAC 2 cut(s) 5, 250
RsaNI GTAC 2 cut(s) 4, 249
SaqAI TTAA 1 cut(s) 343
SatI GCNGC 1 cut(s) 80
Sau96I GGNCC 1 cut(s) 103
SchI GAGTC 1 cut(s) 128
SetI ASST 7 cut(s) 47, 63, 78, 151, 184, 225, 273
SfaNI GCATC 1 cut(s) 298
SinI GGWCC 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 3 cut(s) 280, 298, 323
SsiI CCGC 1 cut(s) 106
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 2 cut(s) 14, 248
TaqI TCGA 1 cut(s) 306
TasI AATT 3 cut(s) 280, 298, 323
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 343
Tru9I TTAA 1 cut(s) 343
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 336
TspGWI ACGGA 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.