RLG00000022243

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002545
Physical Location & Seq
Reverse (-)
81898575 .. 81899682
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022243

Sequence Viewer

Length: 420 bp
ATGTTTCTTCGTTCCGTCAAGGATGAGGTGGTGTATTACTGTATTGGCTGTAAATATAATGATCGAGTCGTTGTGGTGAGGCCGAGGACGAGGTTGGCTGTGAAAAAGCTGAAGGAGGAGGAGGTGCTGCCGGAGCCAGAGAAGGAGAAGGAGAAGGACCGCGTGATTGTGATTTCGGAGAAGGAAGACTCCGATTCGGAGGGTGAAAGGGAGGAAGAAGAAGGAGAGAACAAAGCTGTGATGGTTGACGATAGTGGTGGCTTGAGTGCTAACAAGGTTGCTGGGCAAGAAGAAGAGAACAGTACGACGCCGTTTCCAGAAAAGATATTTGGTGATGTGATGGGAATGCTTAACCATGTTTCCATGTATATTGATTATCTGGACATCTTCTATTACAGCTTTGGAACTTATCCCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04392 map04011 map04392
Pfam Domains
Protein Families
Pkinase

Protein Analysis

140

Amino Acids

15.99

Weight (kDa)

4.6

Isoelectric Point (pI)

53.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 162
AciI CCGC 1 cut(s) 160
AcuI CTGAAG 1 cut(s) 131
AcyI GRCGYC 1 cut(s) 308
AfaI GTAC 1 cut(s) 304
AjuI GAANNNNNNNTTGG 2 cut(s) 312, 344
AluBI AGCT 3 cut(s) 109, 236, 399
AluI AGCT 3 cut(s) 109, 236, 399
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 3 cut(s) 88, 215, 344
AvaII GGWCC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 114
BccI CCATC 2 cut(s) 235, 334
BceAI ACGGC 1 cut(s) 295
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 283
BsaHI GRCGYC 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 28
BseRI GAGGAG 2 cut(s) 131, 134
BseXI GCAGC 1 cut(s) 114
BseYI CCCAGC 1 cut(s) 281
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 131
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 1 cut(s) 82
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 1 cut(s) 160
BspANI GGCC 1 cut(s) 82
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 83
BssMI GATC 1 cut(s) 61
BssNI GRCGYC 1 cut(s) 308
Bst4CI ACNGT 2 cut(s) 41, 302
Bst6I CTCTTC 1 cut(s) 288
BstACI GRCGYC 1 cut(s) 308
BstF5I GGATG 1 cut(s) 28
BstFNI CGCG 1 cut(s) 162
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 114
BstV2I GAAGAC 1 cut(s) 192
BsuRI GGCC 1 cut(s) 82
BtsCI GGATG 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 157
CseI GACGC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 303
CviAII CATG 2 cut(s) 356, 364
CviJI RGCY 8 cut(s) 48, 82, 98, 109, 136, 236, 261, 399
CviKI_1 RGCY 8 cut(s) 48, 82, 98, 109, 136, 236, 261, 399
CviQI GTAC 1 cut(s) 303
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 131
FaeI CATG 2 cut(s) 359, 367
FaiI YATR 4 cut(s) 57, 357, 365, 369
FatI CATG 2 cut(s) 355, 363
Fnu4HI GCNGC 1 cut(s) 128
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 128
GsaI CCCAGC 1 cut(s) 285
HaeIII GGCC 1 cut(s) 82
HapII CCGG 1 cut(s) 131
HgaI GACGC 1 cut(s) 316
Hin1I GRCGYC 1 cut(s) 308
Hin1II CATG 2 cut(s) 359, 367
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 3 cut(s) 66, 188, 194
HpaII CCGG 1 cut(s) 131
HphI GGTGA 3 cut(s) 88, 215, 344
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 3 cut(s) 178, 193, 199
Hpy188III TCNNGA 2 cut(s) 317, 380
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 310
HpyAV CCTTC 6 cut(s) 106, 136, 142, 148, 175, 215
HpyCH4III ACNGT 2 cut(s) 41, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
Hsp92I GRCGYC 1 cut(s) 308
Hsp92II CATG 2 cut(s) 359, 367
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 5 cut(s) 144, 150, 267, 330, 365
Lsp1109I GCAGC 1 cut(s) 114
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 6 cut(s) 197, 227, 230, 302, 305, 379
MlyI GAGTC 2 cut(s) 75, 182
MnlI CCTC 9 cut(s) 19, 72, 78, 84, 109, 112, 115, 193, 205
MseI TTAA 2 cut(s) 351, 418
MspI CCGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 351
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 133
NdeII GATC 1 cut(s) 61
NlaIII CATG 2 cut(s) 359, 367
NlaIV GGNNCC 1 cut(s) 135
NmeAIII GCCGAG 1 cut(s) 108
PctI GAATGC 1 cut(s) 351
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 1 cut(s) 129
PleI GAGTC 2 cut(s) 74, 182
PpsI GAGTC 2 cut(s) 74, 182
PspFI CCCAGC 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 157
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
SaqAI TTAA 2 cut(s) 351, 418
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 2 cut(s) 75, 182
SetI ASST 7 cut(s) 30, 95, 111, 126, 238, 279, 401
SinI GGWCC 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
SsiI CCGC 1 cut(s) 160
TaaI ACNGT 2 cut(s) 41, 302
TaqI TCGA 1 cut(s) 64
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 351, 418
Tru9I TTAA 2 cut(s) 351, 418
TseI GCWGC 1 cut(s) 127
TspGWI ACGGA 1 cut(s) 4
VpaK11BI GGWCC 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.